CmoCh04G002830 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G002830
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Zinc finger CCCH domain-containing protein 53
Location	Cmo_Chr04 : 1425357 .. 1426670 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCCTACGCCACCGCCCGTTACGATCGTATCTTCAACCGATATGCCTCGGCAGCTATCGCCACCGGCAAACGAATTCTCTGTCCATGACAAGGAGACATCCCAAAATGATGACATTGATTTACTTGAATGGTAATAACAATAAACCATTTACATTACTCCAATTTAGACATCCCAATTCATTACTCAGATTATGTGTTATAAAACGACCATTACAGTTTCGAACACAACCTCCCGGATAGTCCCTTTGCATCACCAGCAAAAGCCACCGGCGACCATGCAGCAAACGACTCCGACGACGCCGACGCCAACCCCGAGTCGAATCTCACATCAACTTCCTCTCTGGAAGTAGCAGCATCCTTCAAATCCTACAATTGCCAAATGCCAAGGTCAGCACTAAACCAACCAACCAACCAAACAACCAAACAATCAACACCTTAGAGTACTCTCACAATCCATTAAACTAAACAACAATCACTCTACAGGTTCCCATCGAGCCACGGGTCGATCGGAATGTACGTAGGGACAGGCGGGCCGACATGTCCGGTGGGGATTTAGCATCAAAAGCAGCAGCCACAGCAGGTAAAAAAGAAAACCCACAAAACCAAATGAATACTTCAACGATTACTCCATTGAAAAACAGAAAAAGAAAGGAAATTGCTTGGTTTTAACGATCATGTCTGGTGAATTCCAGGAAACAAAAAAAGAAAAAGAAAAAAAAGGAAAAATAAAGAGATTAACCAAAACAGCAGAGGAGTACACAGTATGAACACAGTATCTATAGAGAATGAGGGGAAGCAGAGGCAGGTCCTCCACAAGGGCACACCATCATATGAAGAGTACAAAAGAAAAGCAGTAAAAGAGGGAAGGTGGGGGCAGACCCATATGCATTTCTTCCATGTTTACTGTTCTTGATGGTAGCAGAGCAGTAGAATTCCATCATCTTCTTCTTCTCTCTTCCTTTTTAGTGTTATAAATTTGAATTTTATAGGTTAAAAGTAAGAAGAAAAAGAACACACAGAAAGAAAGAAAGCATGTTTTTATTTTTTTTTTTAAGGGTTTTTTCACAGAGTACTTCAAAATGGCAGAGGTTGAAGAAGAAGATGATGATGATGGTGGAGAGACTGTAATATTCCATTTTTAATTTCATTTTCTCTCATACTTTTCTCTCTTCCTTATGCCGTTTAGCAGAATTTAAGGATATTAAATTTAATAATATTTTAAAAACAAAATTGAAACAGACTCCGGTTCGGTTCGGTTTGAGAGGAGAGTGGGACAAAGAAGATTGAAATAGGGGTTTAGGGTCACATGGG

mRNA sequence

ATGGCCCTACGCCACCGCCCGTTACGATCGTATCTTCAACCGATATGCCTCGGCAGCTATCGCCACCGGCAAACGAATTCTCTTTTCGAACACAACCTCCCGGATAGTCCCTTTGCATCACCAGCAAAAGCCACCGGCGACCATGCAGCAAACGACTCCGACGACGCCGACGCCAACCCCGAGTCGAATCTCACATCAACTTCCTCTCTGGAAGTAGCAGCATCCTTCAAATCCTACAATTGCCAAATGCCAAGGTCAGCACTAAACCAACCAACCAACCAAACAACCAAACAATCAACACCTTAGAGTACTCTCACAATCCATTAAACTAAACAACAATCACTCTACAGGTTCCCATCGAGCCACGGGTCGATCGGAATGTACGTAGGGACAGGCGGGCCGACATGTCCGGTGGGGATTTAGCATCAAAAGCAGCAGCCACAGCAGGAAACAAAAAAAGAAAAAGAAAAAAAAGGAAAAATAAAGAGATTAACCAAAACAGCAGAGGAGTACACAGTATGAACACAGTATCTATAGAGAATGAGGGGAAGCAGAGGCAGGTCCTCCACAAGGGCACACCATCATATGAAGAGTACAAAAGAAAAGCAGTAAAAGAGGGAAGGTGGGGGCAGACCCATATGCATTTCTTCCATGTTTACTGTTCTTGATGGTAGCAGAGCAGTAGAATTCCATCATCTTCTTCTTCTCTCTTCCTTTTTAGTGTTATAAATTTGAATTTTATAGGTTAAAAGTAAGAAGAAAAAGAACACACAGAAAGAAAGAAAGCATGTTTTTATTTTTTTTTTTAAGGGTTTTTTCACAGAGTACTTCAAAATGGCAGAGGTTGAAGAAGAAGATGATGATGATGGTGGAGAGACTGTAATATTCCATTTTTAATTTCATTTTCTCTCATACTTTTCTCTCTTCCTTATGCCGTTTAGCAGAATTTAAGGATATTAAATTTAATAATATTTTAAAAACAAAATTGAAACAGACTCCGGTTCGGTTCGGTTTGAGAGGAGAGTGGGACAAAGAAGATTGAAATAGGGGTTTAGGGTCACATGGG

Coding sequence (CDS)

ATGGCCCTACGCCACCGCCCGTTACGATCGTATCTTCAACCGATATGCCTCGGCAGCTATCGCCACCGGCAAACGAATTCTCTTTTCGAACACAACCTCCCGGATAGTCCCTTTGCATCACCAGCAAAAGCCACCGGCGACCATGCAGCAAACGACTCCGACGACGCCGACGCCAACCCCGAGTCGAATCTCACATCAACTTCCTCTCTGGAAGTAGCAGCATCCTTCAAATCCTACAATTGCCAAATGCCAAGGTCAGCACTAAACCAACCAACCAACCAAACAACCAAACAATCAACACCTTAG

Homology

[Close]

BLAST of CmoCh04G002830 vs. TrEMBL
Match: A0A0A0KPZ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175810 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.4e-11
Identity = 44/66 (66.67%), Postives = 48/66 (72.73%), Query Frame = 1


Query: 29  FEHNLPDSPFASPAKATGDHAANDSD---------DADANPESNLTSTSSLEVAASFKSY 86
           FEHNLPDSPFASPAKATGD+  N SD         D+D    S LTSTSSLEVA SFKS+
Sbjct: 645 FEHNLPDSPFASPAKATGDYTTNFSDIAAVGEAATDSDDASSSILTSTSSLEVATSFKSF 704

[Close]

BLAST of CmoCh04G002830 vs. TrEMBL
Match: A0A072UWB6_MEDTR (RNA-binding domain CCCH-type zinc finger protein OS=Medicago truncatula GN=MTR_3g436060 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.1e-06
Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = 1


Query: 30  EHNLPDSPFASPAKATGDHAA------NDSDDADANPESN------LTSTSSLEVAASFK 86
           EHNLPDSPFASP KA GD+ A      N+++D+DA+  S       L S+SSL++  SFK
Sbjct: 615 EHNLPDSPFASPTKAIGDYMAAFNNGPNETNDSDASANSKFSTNTLLPSSSSLDM-GSFK 674

[Close]

BLAST of CmoCh04G002830 vs. NCBI nr
Match: gi|659090160|ref|XP_008445868.1| (PREDICTED: zinc finger CCCH domain-containing protein 53 isoform X2 [Cucumis melo])

HSP 1 Score: 80.1 bits (196), Expect = 2.4e-12
Identity = 46/66 (69.70%), Postives = 49/66 (74.24%), Query Frame = 1


Query: 29  FEHNLPDSPFASPAKATGDHAANDSD---------DADANPESNLTSTSSLEVAASFKSY 86
           FEHNLPDSPFASPAKATGD+A N SD         D+D    S LTSTSSLEVA SFKSY
Sbjct: 641 FEHNLPDSPFASPAKATGDYATNFSDIAAVGEAANDSDDASSSILTSTSSLEVATSFKSY 700

[Close]

BLAST of CmoCh04G002830 vs. NCBI nr
Match: gi|659090158|ref|XP_008445867.1| (PREDICTED: zinc finger CCCH domain-containing protein 53 isoform X1 [Cucumis melo])

HSP 1 Score: 80.1 bits (196), Expect = 2.4e-12
Identity = 46/66 (69.70%), Postives = 49/66 (74.24%), Query Frame = 1


Query: 29  FEHNLPDSPFASPAKATGDHAANDSD---------DADANPESNLTSTSSLEVAASFKSY 86
           FEHNLPDSPFASPAKATGD+A N SD         D+D    S LTSTSSLEVA SFKSY
Sbjct: 643 FEHNLPDSPFASPAKATGDYATNFSDIAAVGEAANDSDDASSSILTSTSSLEVATSFKSY 702

[Close]

BLAST of CmoCh04G002830 vs. NCBI nr
Match: gi|778700732|ref|XP_011654907.1| (PREDICTED: zinc finger CCCH domain-containing protein 53 isoform X1 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 2.1e-11
Identity = 44/66 (66.67%), Postives = 48/66 (72.73%), Query Frame = 1


Query: 29  FEHNLPDSPFASPAKATGDHAANDSD---------DADANPESNLTSTSSLEVAASFKSY 86
           FEHNLPDSPFASPAKATGD+  N SD         D+D    S LTSTSSLEVA SFKS+
Sbjct: 645 FEHNLPDSPFASPAKATGDYTTNFSDIAAVGEAATDSDDASSSILTSTSSLEVATSFKSF 704

[Close]

BLAST of CmoCh04G002830 vs. NCBI nr
Match: gi|778700740|ref|XP_011654910.1| (PREDICTED: zinc finger CCCH domain-containing protein 53 isoform X2 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 2.1e-11
Identity = 44/66 (66.67%), Postives = 48/66 (72.73%), Query Frame = 1


Query: 29  FEHNLPDSPFASPAKATGDHAANDSD---------DADANPESNLTSTSSLEVAASFKSY 86
           FEHNLPDSPFASPAKATGD+  N SD         D+D    S LTSTSSLEVA SFKS+
Sbjct: 643 FEHNLPDSPFASPAKATGDYTTNFSDIAAVGEAATDSDDASSSILTSTSSLEVATSFKSF 702

[Close]

BLAST of CmoCh04G002830 vs. NCBI nr
Match: gi|922378145|ref|XP_013459312.1| (RNA-binding domain CCCH-type zinc finger protein [Medicago truncatula])

HSP 1 Score: 59.3 bits (142), Expect = 4.5e-06
Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = 1


Query: 30  EHNLPDSPFASPAKATGDHAA------NDSDDADANPESN------LTSTSSLEVAASFK 86
           EHNLPDSPFASP KA GD+ A      N+++D+DA+  S       L S+SSL++  SFK
Sbjct: 615 EHNLPDSPFASPTKAIGDYMAAFNNGPNETNDSDASANSKFSTNTLLPSSSSLDM-GSFK 674

The following BLAST results are available for this feature:

BLAST of CmoCh04G002830 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G002830 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPZ6_CUCSA	1.4e-11	66.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175810 PE=4 SV=1	[more]
A0A072UWB6_MEDTR	3.1e-06	54.41	RNA-binding domain CCCH-type zinc finger protein OS=Medicago truncatula GN=MTR_3...	[more]

BLAST of CmoCh04G002830 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh04G002830 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659090160\|ref\|XP_008445868.1\|	2.4e-12	69.70	PREDICTED: zinc finger CCCH domain-containing protein 53 isoform X2 [Cucumis mel...	[more]
gi\|659090158\|ref\|XP_008445867.1\|	2.4e-12	69.70	PREDICTED: zinc finger CCCH domain-containing protein 53 isoform X1 [Cucumis mel...	[more]
gi\|778700732\|ref\|XP_011654907.1\|	2.1e-11	66.67	PREDICTED: zinc finger CCCH domain-containing protein 53 isoform X1 [Cucumis sat...	[more]
gi\|778700740\|ref\|XP_011654910.1\|	2.1e-11	66.67	PREDICTED: zinc finger CCCH domain-containing protein 53 isoform X2 [Cucumis sat...	[more]
gi\|922378145\|ref\|XP_013459312.1\|	4.5e-06	54.41	RNA-binding domain CCCH-type zinc finger protein [Medicago truncatula]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0097159	organic cyclic compound binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G002830.1	CmoCh04G002830.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G002830	Lsi04G008040	Bottle gourd (USVL1VR-Ls)	cmolsiB670
CmoCh04G002830	Cp4.1LG01g04200	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G002830	MELO3C011738.2	Melon (DHL92) v3.6.1	cmomedB733
CmoCh04G002830	CsaV3_5G006190	Cucumber (Chinese Long) v3	cmocucB0873
CmoCh04G002830	Cla97C02G039660	Watermelon (97103) v2	cmowmbB714
CmoCh04G002830	Bhi07G000892	Wax gourd	cmowgoB0893
CmoCh04G002830	Carg25677	Silver-seed gourd	carcmoB1148
CmoCh04G002830	Carg02060	Silver-seed gourd	carcmoB1139

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G002830	Cucumber (Chinese Long) v3	cmocucB0837
CmoCh04G002830	Wax gourd	cmowgoB0910
CmoCh04G002830	Cucurbita moschata (Rifu)	cmocmoB464
CmoCh04G002830	Cucumber (Gy14) v1	cgycmoB0474
CmoCh04G002830	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G002830	Cucurbita maxima (Rimu)	cmacmoB731
CmoCh04G002830	Wild cucumber (PI 183967)	cmocpiB747
CmoCh04G002830	Cucumber (Chinese Long) v2	cmocuB737
CmoCh04G002830	Melon (DHL92) v3.5.1	cmomeB646
CmoCh04G002830	Watermelon (Charleston Gray)	cmowcgB644
CmoCh04G002830	Watermelon (97103) v1	cmowmB720
CmoCh04G002830	Cucurbita pepo (Zucchini)	cmocpeB674
CmoCh04G002830	Cucumber (Gy14) v2	cgybcmoB652