Carg11229 (gene) Silver-seed gourd

Overview
NameCarg11229
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionU6 snRNA-associated Sm-like protein LSm7
LocationCucurbita_argyrosperma_scaffold_013 : 760547 .. 764913 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATTCTTTCCGCTCCTCACCACTTCCATTGAAAGTAAGCTCCAATTCATTCCCCTTCTTCACACAAATTTCGGTTTTATTCGTTGTTCTTTTGCTCAGTGTAGCTTCCAGTTCTTCAATATTGTTTTCCAGATGCATGATGCCGTAACTTCGTCGAGATTATTTGAATCGACCAGCAGATGGAATTTTATTTTTCGCTCGTCGTAATTTGTTTCATTTCTCGGATATTTCAGGTTTCTGGTGCCTTTAATTTTACTGAGGAGTTGCGAAAACGCTATCGTGATGGTAAATTTCTGAATGATTTGTTCAATTAGGATATTGATGCTGGTTGATTGCGAAGTATAATGTGGTATTCGTATCGTTTGTTTTATCAGTCTGGAAGAAAAGAAACTGTTCTGGATTTGGCTAAGTTTGTAGACAAGGGCGTCCAAGTGAAGCTTACCGGCGGCAGACAAGGTTGTTTCTATTAATTATGGTTAATAGTATTACTGCCACTTGGATTCAATTCATTGCTTTCCAATTAGCAAGATTTTTATTCAACTGTTCGTGTGTTGCGTTGAAGAGGACCGAGGCACATAATTGAATGTTCGATGTCTTTTTTCTTTTTAATTTGTTGTTTTTAAATTCAAGAAAAGTGCCTTATGAGCCTTATTTTCCATTGACAGTTACTGGAACGCTAAAAGGATATGATCAATTGCTGAACCTTGTGCTGGATGAAGCTATAGAGTTTTTAAGAGGTAACCAATTAACTGGATACTGGCAGAATAGATGAGATTTGTGGAATTTTATAAACGTATAGACTGAAAGCTCGATGGAAATTGATTAGCAGCATTCATATAACTTTTCTTATTTATTTTCACCTTCCTGCTATTTTAAATGTACGGGAAATTTAGAAGAAAAAAAAAATCATTTGATATTGGATGAAGAGGCACAAATTAAGTATTTAATTTAGAAGTAACATAAGCAAACAAACAATTTTTCTATAAGAGTAGACAAAGATTTCTGTTCTACCGATTTAACGGATTAAGATATGGCAGTGTAGTAAAGGCCTTTCATATTGAAACGTTATTGTGTTTTACATGTTTTCTTTAAGCATATTTGCAATCGATACGTTTTTTTTTTTTCTATCTTTCAATAGAAAAATGGATGTCATTGGCATTATGGACTATATGAATAGTTATTTTATTTTATTTTATTTTTATTTTTATTTTGAATATTGGATATATTTAAATTTATATTAGGCTGTTGCATAAATTTGTATCCTCAATCTGCATTATTATCTTGTAAATCTTTGCATAACATCATTTTGGATTTTATTCGTGTGCCCATACACTATTATAAGATTTGTTTGAATAAAAGTTGCAAATACGTGCAAATCTGTAACAATCTCTACCATGATATTTAAAACCACCATTTTTTCTTTCTATTGTTACTTGTAACTAGATGATTAATCTATTCATAGGCATAAATGAAATTCTGAATTAATATGTATGTGTGTGCAATGCATATAATATTAAGTAATCACATTCATTCAAAAGGCATGGAAAAAAGAGGAAGATGAGCAATCTCGTCTCCCCGGTCCAGGCCTTGGGGTGGGTGCTGGTGCCCTCGGGAATAGGAGAGCAAAGCTTCAACTCCCGGTTATATTAAGAACAAAAACCTCTATATTATTTATCATCAGTGGGGCATGTTACAGGAAGTTTCAAGAGCCTCCCACCCGGCATTTTCTACCAAAATCACCGCAACTATTTAGCTTATGTACACCCCAGATATGACTAACAACCTCACCCCCAGACCCAAGTATGACACCCACCAACTGACATTGTTCCTTCTCCCCTTACACACTGCACCTTGACTAATGAAAGCCTGGAAAAATATACAAATTAGAGGCAAAACCTAGAAGCTCTCAGAACTTATCTAAGCTCCACATCTTGTGTTCGTAATTTTTTTTAGAGAAAAAAAAAAGGTAATATTTTTGTCTCTACTTCCAAAGCTCCCACAAAAAAGCTTTGAGGAGTTTGAACCACAACCTATTTGGACGTATGCTCACAAAGACTATGTTCGGCAACCAAACACAAGAACACAACAAAACAGAAAAATAACTATATTGCAATATCGATGAAGAAATTACAATATCTAATCGCTTTTTAAGAGGGTTATCTCTCTCCGAAGTCCCACAATGAACAATCCTCACCAAAAATGATCTTATAATGTCCCTAACTCCCCATATTTATAACCAAGTTACCCCCTAACTAATTACCACTATGTCCTTACTCCTAATATTCCCAATATGTTCCTTACTAGTACTATCACAGACTCTTGTAACAAGGCCTGATTATATGTGTGGAAGCACCATTGAAAGCCGGAAACTTCCAGTAGCTTATGCCAACAAGGACAGACTAGGCAGGTCGTGCTTATTAATCCTCAAAATTTGCTTTGTTAAGAAGGTACCACTTAGGAGCCTATACTTTATAAGGGCACTTCTGATGAATTCTGTCCCGTGGTGTTGATATTTCATATTCCGTAGCACCAAGGTTCAAGAACAAACTAGACCTTCTTTGCAGCCCAAGCTTTCCAAATAGCCTCGGAGAGCCATTTCTCCAACATTCTAGGACGTGTAAAGAAGTATTATAATGATACTATAAAGTTCATTTATGAATTAGTAAATGAGTTCATGGACTCATCTGGGTTTGCACCTCTTTTTTTTTTTTTTTTTTTTTTTTGCATCATAGTTCATATCTTAAAATACTATTATGGTTCATGTACTTTGGATTTCTTCCCATTCTAGTCCCTGTACTTTCAAATCTTAAAATCTAGGCCTTATAATTTCAATAAAACTTTAAATTATTCTCTATTGTTGATTTGAAACTAATTTTTAACGAACTTAATAAAATAATAACAATATTTTTCATTCAAGAAAAATATACAATGTGGATATGTTTCCAAAAATTATAGAGGGGAGGCTAATAGAAATTACATTACTTTTTAATAAGTTAATAATAAACTATCTGTTAGGAACTAATATTAAGATTTATTAAAAATAGAAGAACTAAATTTGGACATTTGGACATGCATAAACTAAAATAAAATGAGACCCAAAGTACATGGACCAAAATGATATTTTAATCAAGGTCATATTACACATCATAACAACTTTTAAAAGGCTCTTTCCCAAGGGAAAGGTTTTTTATTTTCCCAAATTCGGATGATTTAGTTTGGTGGTGATATGTTTCTATTGTTTTGATTTTGGTCCTATGCCCCACTTTCTTAATATCTAAATTCTTTTCGGTTGACCAACTAGTCAGTCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGTGGTAGTAATGGCCTTTTACTTCTGTTTATTTGGTACTTTTTTGAATGAGTAATAAGTTAAAATATTATCCTTACACCAGGAAATATCTGATATATTGACTTTTTTCGGCAGATTCTGATGATCCGTTGAAGACAACAGATCAAACCAGACGTCTTGGCCTAATTGTATGATTCTTACTATCTACATATTTTAGTTATCGTTTAAAATAAGGCACCTATGATTATTAGAGCCTTGGATGCCATGAACAGATTTATCATTTTTTCTGCAGAGTATTATTATTTAAGCATGCAGCTTTGGACTTTATTTTGACAATTGCAATTATCTGTGCGCTAAACAGATTAGATGGTCTTAATTACCGGACAAAGGGCTATATGTTCTAGCCGAGCATGTTTCTATCATTTGAATATTTGTATATTCTTGTGCATTGTGCAACCATTCGTCTCTGCTATCACTTGCACCACGTTAAACTGCTCACGCTTTTCTTGCTATTTTTTTTTTTATTTTTTTTTATTTTAAGGGTTAGTGCATGGTTAACTATTTATTATGAAAAATTTGTTGAAAATTTTAAATTATTTTATCACGAGTAAAAAGTGAAAAATCGGCTCTTCTTAAGCGTGCATATGCAGGAGAAAATAAGTGTTCTATAAGGCGTGCTTCTTAGTTCCAAAAGTGTGTTTATTTTTGGGTACAAGCCTGTATGATCAATTTGCATGCCATTCACTGCAGGTCTGCAGGGGGACTGCCGTAATGCTTGTGTCTCCAGTTGATGGTACAGACGAGATTGCTAACCCCTTTATCCAACCGGATGGTGCATAGGTGTAATTTTTTGTTTACTTTACTTTCCCTGTTCTCTATCTGAATATCAAGTTCCGCTATTTTCTTTGTGATTCCTCTATCTCTCTCTCCCTCTCTCTATTAAAAACAATTGAGTTTGAACCCTTCTATCTAGATACGTGGAGCACTTATCCATGTGAAGTAAAATTTGTGAAATTTTGTTAATTTCAGTAAACTTACCGCTTTCTCTG

mRNA sequence

CATTCTTTCCGCTCCTCACCACTTCCATTGAAAGTAAGCTCCAATTCATTCCCCTTCTTCACACAAATTTCGGTTTTATTCGTTGTTCTTTTGCTCAGTGTAGCTTCCAGTTCTTCAATATTGTTTTCCAGATGCATGATGCCGTAACTTCGTCGAGATTATTTGAATCGACCAGCAGATGGAATTTTATTTTTCGCTCGTCGTAATTTGTTTCATTTCTCGGATATTTCAGGTTTCTGGTGCCTTTAATTTTACTGAGGAGTTGCGAAAACGCTATCGTGATGTCTGGAAGAAAAGAAACTGTTCTGGATTTGGCTAAGTTTGTAGACAAGGGCGTCCAAGTGAAGCTTACCGGCGGCAGACAAGTTACTGGAACGCTAAAAGGATATGATCAATTGCTGAACCTTGTGCTGGATGAAGCTATAGAGTTTTTAAGAGATTCTGATGATCCGTTGAAGACAACAGATCAAACCAGACGTCTTGGCCTAATTGTCTGCAGGGGGACTGCCGTAATGCTTGTGTCTCCAGTTGATGGTACAGACGAGATTGCTAACCCCTTTATCCAACCGGATGGTGCATAGGTGTAATTTTTTGTTTACTTTACTTTCCCTGTTCTCTATCTGAATATCAAGTTCCGCTATTTTCTTTGTGATTCCTCTATCTCTCTCTCCCTCTCTCTATTAAAAACAATTGAGTTTGAACCCTTCTATCTAGATACGTGGAGCACTTATCCATGTGAAGTAAAATTTGTGAAATTTTGTTAATTTCAGTAAACTTACCGCTTTCTCTG

Coding sequence (CDS)

ATGTCTGGAAGAAAAGAAACTGTTCTGGATTTGGCTAAGTTTGTAGACAAGGGCGTCCAAGTGAAGCTTACCGGCGGCAGACAAGTTACTGGAACGCTAAAAGGATATGATCAATTGCTGAACCTTGTGCTGGATGAAGCTATAGAGTTTTTAAGAGATTCTGATGATCCGTTGAAGACAACAGATCAAACCAGACGTCTTGGCCTAATTGTCTGCAGGGGGACTGCCGTAATGCTTGTGTCTCCAGTTGATGGTACAGACGAGATTGCTAACCCCTTTATCCAACCGGATGGTGCATAG

Protein sequence

MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Homology
[Close]
BLAST of Carg11229 vs. NCBI nr
Match: XP_022934168.1 (sm-like protein LSM7 [Cucurbita moschata] >XP_023526539.1 sm-like protein LSM7 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 199.9 bits (507), Expect = 4.0e-48
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKT 60
           MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKT
Sbjct: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKT 60

Query: 61  TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Sbjct: 61  TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99

[Close]
BLAST of Carg11229 vs. NCBI nr
Match: XP_022948303.1 (sm-like protein LSM7 [Cucurbita moschata] >XP_022948305.1 sm-like protein LSM7 [Cucurbita moschata] >XP_022998506.1 sm-like protein LSM7 [Cucurbita maxima] >XP_022998508.1 sm-like protein LSM7 [Cucurbita maxima] >XP_023525746.1 sm-like protein LSM7 [Cucurbita pepo subsp. pepo] >XP_023525747.1 sm-like protein LSM7 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 199.5 bits (506), Expect = 5.3e-48
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKT 60
           MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDSDDPLKT
Sbjct: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT 60

Query: 61  TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Sbjct: 61  TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99

[Close]
BLAST of Carg11229 vs. NCBI nr
Match: XP_022983896.1 (sm-like protein LSM7 [Cucurbita maxima])

HSP 1 Score: 198.4 bits (503), Expect = 1.2e-47
Identity = 98/99 (98.99%), Postives = 98/99 (98.99%), Query Frame = 0 

Query: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKT 60
           MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE IEFLRDSDDPLKT
Sbjct: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDETIEFLRDSDDPLKT 60

Query: 61  TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Sbjct: 61  TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99

[Close]
BLAST of Carg11229 vs. NCBI nr
Match: XP_022152570.1 (sm-like protein LSM7 [Momordica charantia] >XP_022152571.1 sm-like protein LSM7 [Momordica charantia])

HSP 1 Score: 198.0 bits (502), Expect = 1.5e-47
Identity = 98/99 (98.99%), Postives = 98/99 (98.99%), Query Frame = 0 

Query: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKT 60
           MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRD DDPLKT
Sbjct: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT 60

Query: 61  TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Sbjct: 61  TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99

[Close]
BLAST of Carg11229 vs. NCBI nr
Match: XP_020260133.1 (sm-like protein LSM7 isoform X2 [Asparagus officinalis] >ONK81825.1 uncharacterized protein A4U43_C01F33250 [Asparagus officinalis])

HSP 1 Score: 197.2 bits (500), Expect = 2.6e-47
Identity = 96/99 (96.97%), Postives = 98/99 (98.99%), Query Frame = 0 

Query: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKT 60
           MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDSDDPLKT
Sbjct: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT 60

Query: 61  TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TDQTRRLGLIVCRGTAVMLVSP DGTDEIANPF+QPDGA
Sbjct: 61  TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFLQPDGA 99

[Close]
BLAST of Carg11229 vs. TAIR10
Match: AT2G03870.2 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 182.2 bits (461), Expect = 1.6e-46
Identity = 88/94 (93.62%), Postives = 92/94 (97.87%), Query Frame = 0 

Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EF+RD DDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKT 60

Query: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFI 95
          TDQTRRLGLIVCRGTAVMLVSP DGT+EIANPF+
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPTDGTEEIANPFV 94

[Close]
BLAST of Carg11229 vs. TAIR10
Match: AT2G23930.1 (probable small nuclear ribonucleoprotein G)

HSP 1 Score: 60.5 bits (145), Expect = 6.9e-10
Identity = 29/75 (38.67%), Postives = 48/75 (64.00%), Query Frame = 0 

Query: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGL 69
          DL K++DK +Q+KL   R VTGTL+G+DQ +NLV+D  +E        +   D+T  +G+
Sbjct: 9  DLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE--------VNGNDKT-DIGM 68

Query: 70 IVCRGTAVMLVSPVD 85
          +V RG +++ V  ++
Sbjct: 69 VVIRGNSIVTVEALE 74

[Close]
BLAST of Carg11229 vs. TAIR10
Match: AT3G11500.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 59.3 bits (142), Expect = 1.5e-09
Identity = 30/75 (40.00%), Postives = 48/75 (64.00%), Query Frame = 0 

Query: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGL 69
          DL K++DK +Q+KL   R V GTL+G+DQ +NLV+D  +E   + DD    TD    +G+
Sbjct: 9  DLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEV--NGDD---KTD----IGM 68

Query: 70 IVCRGTAVMLVSPVD 85
          +V RG +++ V  ++
Sbjct: 69 VVIRGNSIVTVEALE 74

[Close]
BLAST of Carg11229 vs. TAIR10
Match: AT1G76860.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 44.3 bits (103), Expect = 5.1e-05
Identity = 31/92 (33.70%), Postives = 49/92 (53.26%), Query Frame = 0 

Query: 1  MSGRKETV----LDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVL---DEAIEFLR 60
          MSG +E      LDL +  +D+ + VKL   R++ G L  +DQ LN++L   +E I  + 
Sbjct: 1  MSGEEEATVREPLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVE 60

Query: 61 DSDDPLKTTDQT--RRLGLIVCRGTAVMLVSP 83
            D+  +   +T  R +  +  RG  V+LVSP
Sbjct: 61 IDDETYEEIVRTTKRTIEFLFVRGDGVILVSP 92

[Close]
BLAST of Carg11229 vs. TAIR10
Match: AT1G19120.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 43.9 bits (102), Expect = 6.7e-05
Identity = 27/74 (36.49%), Postives = 40/74 (54.05%), Query Frame = 0 

Query: 11 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLI 70
          LA ++DK + V L  GR++ G L+ +DQ  N VL+EA E +   D           LGL 
Sbjct: 15 LAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVIVGDLYCDIP-----LGLY 74

Query: 71 VCRGTAVMLVSPVD 85
          + RG  V+L+  +D
Sbjct: 75 IIRGENVVLIGELD 83

[Close]
BLAST of Carg11229 vs. Swiss-Prot
Match: sp|Q9SI54|LSM7_ARATH (Sm-like protein LSM7 OS=Arabidopsis thaliana OX=3702 GN=LSM7 PE=1 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 2.8e-45
Identity = 88/94 (93.62%), Postives = 92/94 (97.87%), Query Frame = 0 

Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EF+RD DDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKT 60

Query: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFI 95
          TDQTRRLGLIVCRGTAVMLVSP DGT+EIANPF+
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPTDGTEEIANPFV 94

[Close]
BLAST of Carg11229 vs. Swiss-Prot
Match: sp|Q9UK45|LSM7_HUMAN (U6 snRNA-associated Sm-like protein LSm7 OS=Homo sapiens OX=9606 GN=LSM7 PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 7.0e-28
Identity = 55/96 (57.29%), Postives = 75/96 (78.12%), Query Frame = 0 

Query: 4   RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQ 63
           +KE++LDL+K++DK ++VK  GGR+ +G LKG+D LLNLVLD  IE++RD DD  K T+ 
Sbjct: 8   KKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTED 67

Query: 64  TRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TR+LGL+VCRGT+V+L+ P DG + I NPFIQ   A
Sbjct: 68  TRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDA 103

[Close]
BLAST of Carg11229 vs. Swiss-Prot
Match: sp|Q9CQQ8|LSM7_MOUSE (U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus OX=10090 GN=Lsm7 PE=1 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.7e-27
Identity = 52/92 (56.52%), Postives = 74/92 (80.43%), Query Frame = 0 

Query: 4  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQ 63
          +KE++LDL+K++DK ++VK  GGR+ +G LKG+D LLNLVLD  +E++RD DD  K T+ 
Sbjct: 8  KKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQYKLTED 67

Query: 64 TRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQ 96
          TR+LGL+VCRGT+V+L+ P DG + I NPF+Q
Sbjct: 68 TRQLGLVVCRGTSVVLICPQDGMEAIPNPFVQ 99

[Close]
BLAST of Carg11229 vs. Swiss-Prot
Match: sp|Q54HF6|LSM7_DICDI (Probable U6 snRNA-associated Sm-like protein LSm7 OS=Dictyostelium discoideum OX=44689 GN=lsm7 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 5.0e-26
Identity = 52/90 (57.78%), Postives = 72/90 (80.00%), Query Frame = 0 

Query: 4  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQ 63
          +KE++LDL KF+ K + VK TGGR+V G LKGYDQL+N+ LD+  EF+RD++DPL TTD+
Sbjct: 8  KKESILDLQKFLGKEICVKFTGGREVQGILKGYDQLVNITLDQTQEFIRDAEDPLITTDE 67

Query: 64 TRRLGLIVCRGTAVMLVSPVDGTDEIANPF 94
           R LGL+VCRG++VM+V P +G + I NP+
Sbjct: 68 KRFLGLVVCRGSSVMMVCPTEGCEPIDNPY 97

[Close]
BLAST of Carg11229 vs. Swiss-Prot
Match: sp|O74499|LSM7_SCHPO (U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=lsm7 PE=1 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 6.2e-24
Identity = 50/94 (53.19%), Postives = 74/94 (78.72%), Query Frame = 0 

Query: 4   RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQ 63
           RKE++LDL+++ D+ +Q   TGGRQ+TG LKG+DQL+NLVLD+  E LR+ +D  K T  
Sbjct: 21  RKESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDG-KLTGA 80

Query: 64  TRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD 98
            R+LGL+V RGT ++L++P+DG++EI NPF+Q +
Sbjct: 81  IRKLGLVVVRGTTLVLIAPMDGSEEIPNPFVQAE 113

[Close]
BLAST of Carg11229 vs. TrEMBL
Match: tr|A0A067LFY7|A0A067LFY7_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_16737 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.3e-47
Identity = 96/99 (96.97%), Postives = 98/99 (98.99%), Query Frame = 0 

Query: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKT 60
           MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+E+LRDSDDPLKT
Sbjct: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEYLRDSDDPLKT 60

Query: 61  TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TDQTRRLGLIVCRGTAVMLVSP DGTDEIANPFIQPDGA
Sbjct: 61  TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA 99

[Close]
BLAST of Carg11229 vs. TrEMBL
Match: tr|A9PBG1|A9PBG1_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G269500v3 PE=2 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.9e-47
Identity = 95/99 (95.96%), Postives = 98/99 (98.99%), Query Frame = 0 

Query: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKT 60
           MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRD+DDPLKT
Sbjct: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKT 60

Query: 61  TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TDQTRRLGLIVCRGTAVMLVSP DGTDEIANPF+QPDGA
Sbjct: 61  TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFVQPDGA 99

[Close]
BLAST of Carg11229 vs. TrEMBL
Match: tr|A0A166DN70|A0A166DN70_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006299 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.9e-47
Identity = 95/99 (95.96%), Postives = 98/99 (98.99%), Query Frame = 0 

Query: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKT 60
           MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRD+DDPLKT
Sbjct: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKT 60

Query: 61  TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TDQTRRLGLIVCRGTAVMLVSP DGTDEIANPF+QPDGA
Sbjct: 61  TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFVQPDGA 99

[Close]
BLAST of Carg11229 vs. TrEMBL
Match: tr|A0A1U8KS65|A0A1U8KS65_GOSHI (sm-like protein LSM7 OS=Gossypium hirsutum OX=3635 GN=LOC107918492 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.9e-47
Identity = 96/99 (96.97%), Postives = 97/99 (97.98%), Query Frame = 0 

Query: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKT 60
           MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRD DDPLKT
Sbjct: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDQDDPLKT 60

Query: 61  TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TDQTRRLGLIVCRGTAVMLVSP DGTDEIANPFIQPDGA
Sbjct: 61  TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA 99

[Close]
BLAST of Carg11229 vs. TrEMBL
Match: tr|A0A0D2P698|A0A0D2P698_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_004G036100 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.9e-47
Identity = 96/99 (96.97%), Postives = 97/99 (97.98%), Query Frame = 0 

Query: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKT 60
           MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRD DDPLKT
Sbjct: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDQDDPLKT 60

Query: 61  TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TDQTRRLGLIVCRGTAVMLVSP DGTDEIANPFIQPDGA
Sbjct: 61  TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA 99

The following BLAST results are available for this feature:
BLAST of Carg11229 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022934168.14.0e-48100.00sm-like protein LSM7 [Cucurbita moschata] >XP_023526539.1 sm-like protein LSM7 [... [more]
XP_022948303.15.3e-4898.99sm-like protein LSM7 [Cucurbita moschata] >XP_022948305.1 sm-like protein LSM7 [... [more]
XP_022983896.11.2e-4798.99sm-like protein LSM7 [Cucurbita maxima][more]
XP_022152570.11.5e-4798.99sm-like protein LSM7 [Momordica charantia] >XP_022152571.1 sm-like protein LSM7 ... [more]
XP_020260133.12.6e-4796.97sm-like protein LSM7 isoform X2 [Asparagus officinalis] >ONK81825.1 uncharacteri... [more]
BLAST of Carg11229 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G03870.21.6e-4693.62Small nuclear ribonucleoprotein family protein[more]
AT2G23930.16.9e-1038.67probable small nuclear ribonucleoprotein G[more]
AT3G11500.11.5e-0940.00Small nuclear ribonucleoprotein family protein[more]
AT1G76860.15.1e-0533.70Small nuclear ribonucleoprotein family protein[more]
AT1G19120.16.7e-0536.49Small nuclear ribonucleoprotein family protein[more]
BLAST of Carg11229 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SI54|LSM7_ARATH2.8e-4593.62Sm-like protein LSM7 OS=Arabidopsis thaliana OX=3702 GN=LSM7 PE=1 SV=1[more]
sp|Q9UK45|LSM7_HUMAN7.0e-2857.29U6 snRNA-associated Sm-like protein LSm7 OS=Homo sapiens OX=9606 GN=LSM7 PE=1 SV... [more]
sp|Q9CQQ8|LSM7_MOUSE2.7e-2756.52U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus OX=10090 GN=Lsm7 PE=1 S... [more]
sp|Q54HF6|LSM7_DICDI5.0e-2657.78Probable U6 snRNA-associated Sm-like protein LSm7 OS=Dictyostelium discoideum OX... [more]
sp|O74499|LSM7_SCHPO6.2e-2453.19U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces pombe (strain 97... [more]
BLAST of Carg11229 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A067LFY7|A0A067LFY7_JATCU2.3e-4796.97Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_16737 PE=4 SV=1[more]
tr|A9PBG1|A9PBG1_POPTR2.9e-4795.96Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G269500v3 PE=... [more]
tr|A0A166DN70|A0A166DN70_DAUCA2.9e-4795.96Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006299 ... [more]
tr|A0A1U8KS65|A0A1U8KS65_GOSHI2.9e-4796.97sm-like protein LSM7 OS=Gossypium hirsutum OX=3635 GN=LOC107918492 PE=4 SV=1[more]
tr|A0A0D2P698|A0A0D2P698_GOSRA2.9e-4796.97Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_004G036100 PE=4 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
GO:0000956nuclear-transcribed mRNA catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom_sf
IPR017132Lsm7
IPR001163LSM_dom_euk/arc
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0000956 nuclear-transcribed mRNA catabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg11229-RACarg11229-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 9..82
e-value: 2.1E-23
score: 93.8
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 10..82
e-value: 2.2E-20
score: 72.0
NoneNo IPR availablePIRSFPIRSF037188Lsm7coord: 1..98
e-value: 4.7E-44
score: 146.9
NoneNo IPR availableGENE3DG3DSA:2.30.30.100coord: 1..92
e-value: 7.7E-32
score: 111.3
NoneNo IPR availablePANTHERPTHR10553SMALL NUCLEAR RIBONUCLEOPROTEINcoord: 3..97
NoneNo IPR availablePANTHERPTHR10553:SF5U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM7coord: 3..97
IPR017132Sm-like protein Lsm7CDDcd01729LSm7coord: 5..93
e-value: 7.16998E-56
score: 169.304
IPR010920LSM domain superfamilySUPERFAMILYSSF50182Sm-like ribonucleoproteinscoord: 11..85

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg11229Cla017258Watermelon (97103) v1carwmB0816
Carg11229Csa3G697950Cucumber (Chinese Long) v2carcuB0829
Carg11229MELO3C023964Melon (DHL92) v3.5.1carmeB0811
Carg11229ClCG10G012490Watermelon (Charleston Gray)carwcgB0792
Carg11229CSPI03G29780Wild cucumber (PI 183967)carcpiB0850
Carg11229Cucsa.195080Cucumber (Gy14) v1carcgyB0931
Carg11229CmaCh01G002200Cucurbita maxima (Rimu)carcmaB1134
Carg11229CmaCh14G010150Cucurbita maxima (Rimu)carcmaB1132
Carg11229CmoCh01G002310Cucurbita moschata (Rifu)carcmoB1105
Carg11229CmoCh14G010310Cucurbita moschata (Rifu)carcmoB1102
Carg11229Lsi03G012140Bottle gourd (USVL1VR-Ls)carlsiB748
Carg11229Cp4.1LG02g15460Cucurbita pepo (Zucchini)carcpeB1146
Carg11229Cp4.1LG03g04380Cucurbita pepo (Zucchini)carcpeB1147
Carg11229CsGy3G027610Cucumber (Gy14) v2carcgybB0802
Carg11229MELO3C023964.2Melon (DHL92) v3.6.1carmedB0822
Carg11229CsaV3_3G032260Cucumber (Chinese Long) v3carcucB0853
Carg11229Cla97C10G195280Watermelon (97103) v2carwmbB0851
Carg11229Bhi11G001191Wax gourdcarwgoB0951
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg11229Carg07317Silver-seed gourdcarcarB605
The following block(s) are covering this gene:
GeneOrganismBlock
Carg11229Silver-seed gourdcarcarB383
Carg11229Silver-seed gourdcarcarB454
Carg11229Cucumber (Gy14) v2carcgybB0808
Carg11229Cucurbita maxima (Rimu)carcmaB1133
Carg11229Cucurbita maxima (Rimu)carcmaB1136
Carg11229Cucurbita moschata (Rifu)carcmoB1104
Carg11229Cucurbita pepo (Zucchini)carcpeB1144
Carg11229Cucurbita pepo (Zucchini)carcpeB1145
Carg11229Bottle gourd (USVL1VR-Ls)carlsiB747
Carg11229Melon (DHL92) v3.5.1carmeB0809
Carg11229Melon (DHL92) v3.6.1carmedB0820
Carg11229Wax gourdcarwgoB0954