Cucsa.195080 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.195080
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionU6 snRNA-associated Sm-like protein LSm7
Locationscaffold01349 : 75689 .. 80038 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGGGCCTGACGAGAAATTGGGCCAGAGTCCAACCGTCTATGGTTTGGAGGGTTGCCTTTCCCGCCATCCACCATTCCTCTCAACGAGCAAATCTAGGGCACATTCTTTCCGCTCCTCATCACTTCCAATCAAAGTAAGCTTCAATTCACTCTCCTTCTTTCCACAAATTTCGGTTTTCTGCACTCTTCTTATACTCAATGTACCTTCCAGTTCTTCAATTTTTGATTTCCAGATGCATATAATGCCCTAACTTCCCCGACTTTTATTTTAATCGATCAGCACTTGGAATTTTCTCTTTTCGCCCGTAACGAAACGTCTCACTTCTCGGATATTTCAGGTTCCTGGGGCGTTTAATTTTACGGAGGAGCTGAGAAAACGATTGCGCGATGGTAAATTTCGTAACGATTTCTTCAATTAGAATATTGATTATGGCAGGCTGATTACGAAGTATAATGTGGTATTCGTATCTTTtGTTTTATCAGTCTGGAAGAAAAGAAACTGTTCTGGATTTGGCTAAGTTTGTAGACAAAGGCGTCCAAGTGAAGCTTACTGGCGGCAGACAAGGTTATTTCTAATGATTATGCTTATAGTATTACTGGACGATTGTTTGCGCTTTGTTACTTCCCGATTAGTAAGCTTTTtATTAAAGTAATCGTCTGTTGCTGTTGAGAGGATCGAGGCATATAATCTAATGTTCGATGTTGATTTTGTTTTtCTTTATGGAGCTTTCTTTATTTTtAAATGCGAGGAAATTGCTTTGTGAACCTTAGTTTTCCATTTACAGTTACTGGAACGCTCAAAGGATATGATCAATTGCTAAACCTTGTGCTGGATGAAGCTGTAGAGTTTTTAAGAGGTAACCAATTAACTGGATTCTGGCATAATATATGAGATTTGTGGAATTTTGTGGGCCTTTAGACTGAAAGCTCACTGAGTATTGATTAGTATTGTTCATATCGTTTTTCTCATTTATCATCACTTTTCTTTATCTGATTGCTATTTTAAATATATGAGAAACAATTAGAGTTAGTGTGAGAATCATTTGATATTGGATGAAAGACACTAATTAAGATTTTAATTTATCAGTAACATATGCAGGCGAAATAGTTTTTTtCTATTGTATTAATTTATATATAGTTTTTCTATTAGAATAGATACTGGTTTATTTTCTGTTGATTTATCTAATTAAGATGTGGTGATGTGATAAATAACCTTTCATGTAAAACATTGTTTTTGCTTTGCATGTTTTCTTTAAATATAATTTGAATGGATATGTTTTTtCTTTCTTTCTTTCAATAGAAAAACAAACATGGCAATAATACGATGAACTATATGAATAATTCTGTTATTTTATTTTTATTTTGAATCTTGGATATATTTTTAATTTATATTAGGCTATTGCATAAATTAGCATGCGCAATTTGCATTATTATCTTGCAAACCTTTGCATAACATAAATTTGGACTTTATTTGTATGCCCATATGCTGTTATGAGATTTCACTTGAATAAAAGTTGCAAATATGTGCAAATCTATATCAGTTGGTTTCATAATAATTTTCTTATATAAGAAGTCTTTCATAATTTATGAAAACCATGATTTTTTTCTTTCTATTGTAACTTCTAACTGGATGATTAATTAATTCATAGGGCATAAATGAAATTCTGATTGAACATGTATGTGTGTGCAATACATATAATAATAAGCAATCAATATGCATGGACAAAAGAGGAAGATAAGCTATCCCGTCTTCCAATAGGTCAATAAGGTTACTATAAGGCACTTCAATTGGTTAGAATCAGAAAGAGCTGTGACTGTTTTTTTCTTTTTTtGAAAAAaCCAGTGGTTGACCTCTAGATTATTTAACATCACATCTTCAGTGAGTAGGGTCTGGGAATACATGTCAAGGGAAGTTTCAAGAACCTCCCATCTAGCATTTCCTACTGAAATACACAGCAACTATTTAGCTTATGTACACTCAAGATATGGCTAACTACCTCACCCATGTCTCTCACCCCCAAGTATGACAGACACCAACTAACTTTATTCTCTCACATTTACTCTCCCCTTACACACTGATACGCTCTGGCTGTTGAAGGCCTATTAGGAAGGGTATACAAATTTGAGGGCAGATCTAGATGTTCTCAGAACTTATCCAAGCTCCAAACCTTGTCTTCCTAATCTTTTTGTCTCCTTCCAAAGTTCCTCCCAAAAAGCTTTGATGGTTTTGAACCACACACCATCCGATTTAAACATATGCTCACAGAGAATGTTGGAACAAGGCCGGTTTATATGTTATGGAAGCACCAATGGAAGCTGGAGTCCAGAAAGATCCAGTAGCTTAAACCTACAACAGAATGAGCAGGAAGTCCTAATAATCCTCAAAATTTCTTGTTTTTAACCAAACTTTAGACACCATTGGCTTAGAATGGAAGGTCCTTTTATAACCCTTACTTGGGGAAGGGGATGCCTTCTCACCAAGTATCAACTTGCAAATTAGTTTAGGAAACACAAGCATGGACATTTAATGTAGGTTCACTCTCGAGCAACATTTTTTATTTGCATCATTCATTGGTTAATGTACCATTTTGGTCCTTATACTCTAGGATTTACTTTTATTCCATTTTAATTCTGGTATTATACTTTCAAATATTCAAATATAATCCCTGGAATGACTACTTTCAATAAATTAGAAATATAGTCTCTACTGTTTATTTGAAGTAAATTTTGATCAAACTTGGTAAAATAATAATATTAATTTTCATTCAACAGACCATCTTTTTTCTTTATGAAGAGGTTAACACTAAGCTATTGTTAGGGATTAATTTTAAGATTTATTTGAACTTGGAACTGTATGGAATAAATTTAGACATTTGGATTTATGTGGGCTAAAATGGAATGAAACTTTAAGTTCATGGACCAAAATGATATTTTGACTTAGTTCATATTGCACATTAACAAAAAGGCTCCTTTCCAAAGGTAAGGTTTTTtATTTTCCCAAAATCCAGCTGCTTTAGTTTGGTGGTTGTATGTTTCAATCGTTTGATTTTTGTTCTGTGCCCCATTTTCTTAATCCTAAAATTCGCTTTGGTCGACTTATGGTGTACTTGGAATACATTCCCAAGTGATTAATTTAAAAAATAAGTCATTTTGGAAAAGATGTGAGTGTTAGGCAACCACTCAAAATAGCTTTTGAAGTATAGTTTACATAGATTTTATAAAGAAAGTTTAAATAAAAATGAAATTTTAAAAAAaTATTTTGTCCATAAGTCAATCAAAATGAGCCTACAGGCCCTTAGTCAGTCATGTTTATTTCTTCTGTGGTAATAGTGAACCTTTTACTGTTGTTTATTAGTAATCTTTtACAATGAACAATAAGTTAAAAATTGTCCTTGTACCTTATTCCTGATGCTTGAATGACACTGGCGGAAATTTTGATATATTGATTGTCGTTTTAATTCTTTTTCTCTTTTtTTTTCTGCAGATCCTGATGATCCATTGAAGACAACAGATCAAACCAGGCCTCTTGGCCTAATTGTATGATTCTTACTATCTACATATTTTCATCATCGTTTAAAATAAAGCAACTATGATCAAAGCTTTGGATACCATGAACTATCAATTTTTCTAAATAGTATTGTTGTCTAAGCATGCAGCTTTGGACTTCATTTTGACAATTGCAATTATCTATGCGCTAAACAGATCAAATGGTTTTAGGTAGCTTGAAAATTTCAGAGCTTTTATTTATTGTTAAAGAAAAAAGTAGCTATCATGAGATTTTCCGACTGAAGACTTCCTCTAAGGACTGGATAAAGGCCTGTGTGTTCTGACCGAGCCTGTTTCTGTCATTTGAATAAATTGTATATACTTTTGCACTGTGCAAGTGCAATCGATTTTCTCTGCTGTCCATTGCACCATGTTAAACTGACTTGAAAATTTTTtATGCTACTGCTCATTCATTTGAAACTTCTTGCGTGCTTCATACATTTTCTTACCGTCTTTTTTCTCTTTTTATTGCTGTAATTTAGGGGTTAGGCCATGGTTAACTATGTTTTGTGAAAGTTTGTTGAAAATTATAAATTATTCTACCACTCAGAAAAAGTGAAAGTTGGGCTCTTCTTGAGCGTTTTGTGCATGTGCAGAAGAAGTAAACAGGTGTTATTTAAGGCGTGCATTTTAGTTCATATAGATTCTTTTCTTGCGTATTATCTAGCAACCTCAGTATGATTAAAATTGGCATACTATTCATTTCACAGGTGTGCAGGGGGACTGCTGTAATGCTGGTGTCTCCAGTTGATGGAACAGACGAGATTGCTAACCCTTTCATCCAACCCGATGGTGCATAG

mRNA sequence

ATGATTGGGCCTGACGAGAAATTGGGCCAGAGTCCAACCGTCTATGGTTTGGAGGGTTGCCTTTCCCGCCATCCACCATTCCTCTCAACGAGCAAATCTAGGGCACATTCTTTCCGCTCCTCATCACTTCCAATCAAATCTGGAAGAAAAGAAACTGTTCTGGATTTGGCTAAGTTTGTAGACAAAGGCGTCCAAGTGAAGCTTACTGGCGGCAGACAAGTTACTGGAACGCTCAAAGGATATGATCAATTGCTAAACCTTGTGCTGGATGAAGCTGTAGAGTTTTTAAGAGATCCTGATGATCCATTGAAGACAACAGATCAAACCAGGCCTCTTGGCCTAATTGTGTGCAGGGGGACTGCTGTAATGCTGGTGTCTCCAGTTGATGGAACAGACGAGATTGCTAACCCTTTCATCCAACCCGATGGTGCATAG

Coding sequence (CDS)

ATGATTGGGCCTGACGAGAAATTGGGCCAGAGTCCAACCGTCTATGGTTTGGAGGGTTGCCTTTCCCGCCATCCACCATTCCTCTCAACGAGCAAATCTAGGGCACATTCTTTCCGCTCCTCATCACTTCCAATCAAATCTGGAAGAAAAGAAACTGTTCTGGATTTGGCTAAGTTTGTAGACAAAGGCGTCCAAGTGAAGCTTACTGGCGGCAGACAAGTTACTGGAACGCTCAAAGGATATGATCAATTGCTAAACCTTGTGCTGGATGAAGCTGTAGAGTTTTTAAGAGATCCTGATGATCCATTGAAGACAACAGATCAAACCAGGCCTCTTGGCCTAATTGTGTGCAGGGGGACTGCTGTAATGCTGGTGTCTCCAGTTGATGGAACAGACGAGATTGCTAACCCTTTCATCCAACCCGATGGTGCATAG

Protein sequence

MIGPDEKLGQSPTVYGLEGCLSRHPPFLSTSKSRAHSFRSSSLPIKSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA*
Homology
[Close]
BLAST of Cucsa.195080 vs. Swiss-Prot
Match: LSM7_ARATH (Sm-like protein LSM7 OS=Arabidopsis thaliana GN=LSM7 PE=1 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 6.5e-43
Identity = 87/93 (93.55%), Postives = 90/93 (96.77%), Query Frame = 1 

Query: 47  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT 106
           SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEF+RD DDPLKTT
Sbjct: 2   SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTT 61

Query: 107 DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFI 140
           DQTR LGLIVCRGTAVMLVSP DGT+EIANPF+
Sbjct: 62  DQTRRLGLIVCRGTAVMLVSPTDGTEEIANPFV 94

[Close]
BLAST of Cucsa.195080 vs. Swiss-Prot
Match: LSM7_HUMAN (U6 snRNA-associated Sm-like protein LSm7 OS=Homo sapiens GN=LSM7 PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.3e-27
Identity = 55/96 (57.29%), Postives = 75/96 (78.12%), Query Frame = 1 

Query: 49  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQ 108
           +KE++LDL+K++DK ++VK  GGR+ +G LKG+D LLNLVLD  +E++RDPDD  K T+ 
Sbjct: 8   KKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTED 67

Query: 109 TRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 145
           TR LGL+VCRGT+V+L+ P DG + I NPFIQ   A
Sbjct: 68  TRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDA 103

[Close]
BLAST of Cucsa.195080 vs. Swiss-Prot
Match: LSM7_MOUSE (U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus GN=Lsm7 PE=1 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 5.0e-27
Identity = 53/92 (57.61%), Postives = 74/92 (80.43%), Query Frame = 1 

Query: 49  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQ 108
           +KE++LDL+K++DK ++VK  GGR+ +G LKG+D LLNLVLD  +E++RDPDD  K T+ 
Sbjct: 8   KKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQYKLTED 67

Query: 109 TRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQ 141
           TR LGL+VCRGT+V+L+ P DG + I NPF+Q
Sbjct: 68  TRQLGLVVCRGTSVVLICPQDGMEAIPNPFVQ 99

[Close]
BLAST of Cucsa.195080 vs. Swiss-Prot
Match: LSM7_SCHPO (U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lsm7 PE=1 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 6.2e-25
Identity = 54/103 (52.43%), Postives = 79/103 (76.70%), Query Frame = 1 

Query: 40  SSSLPIKSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDP 99
           +SS P +  RKE++LDL+++ D+ +Q   TGGRQ+TG LKG+DQL+NLVLD+  E LR+P
Sbjct: 12  NSSQPTERPRKESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNP 71

Query: 100 DDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD 143
           +D  K T   R LGL+V RGT ++L++P+DG++EI NPF+Q +
Sbjct: 72  EDG-KLTGAIRKLGLVVVRGTTLVLIAPMDGSEEIPNPFVQAE 113

[Close]
BLAST of Cucsa.195080 vs. Swiss-Prot
Match: LSM7_DICDI (Probable U6 snRNA-associated Sm-like protein LSm7 OS=Dictyostelium discoideum GN=lsm7 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 6.2e-25
Identity = 52/90 (57.78%), Postives = 71/90 (78.89%), Query Frame = 1 

Query: 49  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQ 108
           +KE++LDL KF+ K + VK TGGR+V G LKGYDQL+N+ LD+  EF+RD +DPL TTD+
Sbjct: 8   KKESILDLQKFLGKEICVKFTGGREVQGILKGYDQLVNITLDQTQEFIRDAEDPLITTDE 67

Query: 109 TRPLGLIVCRGTAVMLVSPVDGTDEIANPF 139
            R LGL+VCRG++VM+V P +G + I NP+
Sbjct: 68  KRFLGLVVCRGSSVMMVCPTEGCEPIDNPY 97

[Close]
BLAST of Cucsa.195080 vs. TrEMBL
Match: A0A0A0LD28_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G697950 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.4e-47
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 47  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT 106
           SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT
Sbjct: 2   SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT 61

Query: 107 DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 145
           DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Sbjct: 62  DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99

[Close]
BLAST of Cucsa.195080 vs. TrEMBL
Match: W1PP03_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00022p00235920 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 2.6e-46
Identity = 93/99 (93.94%), Postives = 98/99 (98.99%), Query Frame = 1 

Query: 46  KSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 105
           ++GRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDPLKT
Sbjct: 49  ENGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT 108

Query: 106 TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 145
           TDQTRPLGLIVCRGTAVMLVSP DGTDEI+NPF+QPDGA
Sbjct: 109 TDQTRPLGLIVCRGTAVMLVSPTDGTDEISNPFVQPDGA 147

[Close]
BLAST of Cucsa.195080 vs. TrEMBL
Match: V7CN49_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G171900g PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 3.4e-46
Identity = 96/98 (97.96%), Postives = 96/98 (97.96%), Query Frame = 1 

Query: 47  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT 106
           SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT
Sbjct: 2   SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT 61

Query: 107 DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 145
           DQTR LGLIVCRGTAVMLVSP DGTDEIANPFIQPDGA
Sbjct: 62  DQTRQLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA 99

[Close]
BLAST of Cucsa.195080 vs. TrEMBL
Match: A0A0S3SB92_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G128600 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 3.4e-46
Identity = 96/98 (97.96%), Postives = 96/98 (97.96%), Query Frame = 1 

Query: 47  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT 106
           SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT
Sbjct: 2   SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT 61

Query: 107 DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 145
           DQTR LGLIVCRGTAVMLVSP DGTDEIANPFIQPDGA
Sbjct: 62  DQTRQLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA 99

[Close]
BLAST of Cucsa.195080 vs. TrEMBL
Match: A0A0L9V5J1_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g105400 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 3.4e-46
Identity = 96/98 (97.96%), Postives = 96/98 (97.96%), Query Frame = 1 

Query: 47  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT 106
           SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT
Sbjct: 2   SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT 61

Query: 107 DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 145
           DQTR LGLIVCRGTAVMLVSP DGTDEIANPFIQPDGA
Sbjct: 62  DQTRQLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA 99

[Close]
BLAST of Cucsa.195080 vs. TAIR10
Match: AT2G03870.2 (AT2G03870.2 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 174.9 bits (442), Expect = 3.7e-44
Identity = 87/93 (93.55%), Postives = 90/93 (96.77%), Query Frame = 1 

Query: 47  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT 106
           SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEF+RD DDPLKTT
Sbjct: 2   SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTT 61

Query: 107 DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFI 140
           DQTR LGLIVCRGTAVMLVSP DGT+EIANPF+
Sbjct: 62  DQTRRLGLIVCRGTAVMLVSPTDGTEEIANPFV 94

[Close]
BLAST of Cucsa.195080 vs. TAIR10
Match: AT2G23930.1 (AT2G23930.1 probable small nuclear ribonucleoprotein G)

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-09
Identity = 30/75 (40.00%), Postives = 48/75 (64.00%), Query Frame = 1 

Query: 55  DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGL 114
           DL K++DK +Q+KL   R VTGTL+G+DQ +NLV+D  VE        +   D+T  +G+
Sbjct: 9   DLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE--------VNGNDKT-DIGM 68

Query: 115 IVCRGTAVMLVSPVD 130
           +V RG +++ V  ++
Sbjct: 69  VVIRGNSIVTVEALE 74

[Close]
BLAST of Cucsa.195080 vs. TAIR10
Match: AT3G11500.1 (AT3G11500.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 58.5 bits (140), Expect = 3.9e-09
Identity = 28/75 (37.33%), Postives = 44/75 (58.67%), Query Frame = 1 

Query: 55  DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGL 114
           DL K++DK +Q+KL   R V GTL+G+DQ +NLV+D  VE            D    +G+
Sbjct: 9   DLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEV---------NGDDKTDIGM 68

Query: 115 IVCRGTAVMLVSPVD 130
           +V RG +++ V  ++
Sbjct: 69  VVIRGNSIVTVEALE 74

[Close]
BLAST of Cucsa.195080 vs. NCBI nr
Match: gi|449463763|ref|XP_004149601.1| (PREDICTED: sm-like protein LSM7 [Cucumis sativus])

HSP 1 Score: 197.2 bits (500), Expect = 2.0e-47
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 47  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT 106
           SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT
Sbjct: 2   SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT 61

Query: 107 DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 145
           DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Sbjct: 62  DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99

[Close]
BLAST of Cucsa.195080 vs. NCBI nr
Match: gi|769805309|ref|XP_011625467.1| (PREDICTED: sm-like protein LSM7 [Amborella trichopoda])

HSP 1 Score: 193.7 bits (491), Expect = 2.2e-46
Identity = 94/98 (95.92%), Postives = 97/98 (98.98%), Query Frame = 1 

Query: 47  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT 106
           SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDPLKTT
Sbjct: 2   SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTT 61

Query: 107 DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 145
           DQTRPLGLIVCRGTAVMLVSP DGTDEI+NPF+QPDGA
Sbjct: 62  DQTRPLGLIVCRGTAVMLVSPTDGTDEISNPFVQPDGA 99

[Close]
BLAST of Cucsa.195080 vs. NCBI nr
Match: gi|548853744|gb|ERN11727.1| (hypothetical protein AMTR_s00022p00235920 [Amborella trichopoda])

HSP 1 Score: 193.0 bits (489), Expect = 3.7e-46
Identity = 93/99 (93.94%), Postives = 98/99 (98.99%), Query Frame = 1 

Query: 46  KSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 105
           ++GRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDPLKT
Sbjct: 49  ENGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT 108

Query: 106 TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 145
           TDQTRPLGLIVCRGTAVMLVSP DGTDEI+NPF+QPDGA
Sbjct: 109 TDQTRPLGLIVCRGTAVMLVSPTDGTDEISNPFVQPDGA 147

[Close]
BLAST of Cucsa.195080 vs. NCBI nr
Match: gi|593791244|ref|XP_007158661.1| (hypothetical protein PHAVU_002G171900g [Phaseolus vulgaris])

HSP 1 Score: 192.6 bits (488), Expect = 4.8e-46
Identity = 96/98 (97.96%), Postives = 96/98 (97.96%), Query Frame = 1 

Query: 47  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT 106
           SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT
Sbjct: 2   SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT 61

Query: 107 DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 145
           DQTR LGLIVCRGTAVMLVSP DGTDEIANPFIQPDGA
Sbjct: 62  DQTRQLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA 99

[Close]
BLAST of Cucsa.195080 vs. NCBI nr
Match: gi|590724772|ref|XP_007052562.1| (Small nuclear ribonucleoprotein family protein [Theobroma cacao])

HSP 1 Score: 192.2 bits (487), Expect = 6.3e-46
Identity = 96/98 (97.96%), Postives = 96/98 (97.96%), Query Frame = 1 

Query: 47  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT 106
           SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT
Sbjct: 2   SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT 61

Query: 107 DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 145
           DQTR LGLIVCRGTAVMLVSP DGTDEIANPFIQPDGA
Sbjct: 62  DQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA 99

The following BLAST results are available for this feature:
BLAST of Cucsa.195080 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LSM7_ARATH6.5e-4393.55Sm-like protein LSM7 OS=Arabidopsis thaliana GN=LSM7 PE=1 SV=1[more]
LSM7_HUMAN1.3e-2757.29U6 snRNA-associated Sm-like protein LSm7 OS=Homo sapiens GN=LSM7 PE=1 SV=1[more]
LSM7_MOUSE5.0e-2757.61U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus GN=Lsm7 PE=1 SV=1[more]
LSM7_SCHPO6.2e-2552.43U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces pombe (strain 97... [more]
LSM7_DICDI6.2e-2557.78Probable U6 snRNA-associated Sm-like protein LSm7 OS=Dictyostelium discoideum GN... [more]
BLAST of Cucsa.195080 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LD28_CUCSA1.4e-47100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G697950 PE=4 SV=1[more]
W1PP03_AMBTC2.6e-4693.94Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00022p00235920 PE=4 SV=... [more]
V7CN49_PHAVU3.4e-4697.96Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G171900g PE=4 SV=1[more]
A0A0S3SB92_PHAAN3.4e-4697.96Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G128600 PE=... [more]
A0A0L9V5J1_PHAAN3.4e-4697.96Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g105400 PE=4 SV=1[more]
BLAST of Cucsa.195080 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G03870.23.7e-4493.55 Small nuclear ribonucleoprotein family protein[more]
AT2G23930.11.3e-0940.00 probable small nuclear ribonucleoprotein G[more]
AT3G11500.13.9e-0937.33 Small nuclear ribonucleoprotein family protein[more]
BLAST of Cucsa.195080 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449463763|ref|XP_004149601.1|2.0e-47100.00PREDICTED: sm-like protein LSM7 [Cucumis sativus][more]
gi|769805309|ref|XP_011625467.1|2.2e-4695.92PREDICTED: sm-like protein LSM7 [Amborella trichopoda][more]
gi|548853744|gb|ERN11727.1|3.7e-4693.94hypothetical protein AMTR_s00022p00235920 [Amborella trichopoda][more]
gi|593791244|ref|XP_007158661.1|4.8e-4697.96hypothetical protein PHAVU_002G171900g [Phaseolus vulgaris][more]
gi|590724772|ref|XP_007052562.1|6.3e-4697.96Small nuclear ribonucleoprotein family protein [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0008150 biological_process
cellular_component GO:0005732 small nucleolar ribonucleoprotein complex
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005575 cellular_component
molecular_function GO:0003723 RNA binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.195080.1Cucsa.195080.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 55..127
score: 2.9
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 54..127
score: 1.4
IPR010920LSM domainunknownSSF50182Sm-like ribonucleoproteinscoord: 56..130
score: 5.52
NoneNo IPR availableGENE3DG3DSA:2.30.30.100coord: 49..137
score: 6.1
NoneNo IPR availablePANTHERPTHR10553SMALL NUCLEAR RIBONUCLEOPROTEINcoord: 30..142
score: 3.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.195080Cla017258Watermelon (97103) v1cgywmB376
Cucsa.195080Csa3G697950Cucumber (Chinese Long) v2cgycuB297
Cucsa.195080MELO3C023964Melon (DHL92) v3.5.1cgymeB354
Cucsa.195080ClCG10G012490Watermelon (Charleston Gray)cgywcgB354
Cucsa.195080CSPI03G29780Wild cucumber (PI 183967)cgycpiB306
Cucsa.195080CmaCh14G010150Cucurbita maxima (Rimu)cgycmaB0567
Cucsa.195080CmaCh01G002200Cucurbita maxima (Rimu)cgycmaB0569
Cucsa.195080CmoCh14G010310Cucurbita moschata (Rifu)cgycmoB0569
Cucsa.195080CmoCh01G002310Cucurbita moschata (Rifu)cgycmoB0571
Cucsa.195080Lsi03G012140Bottle gourd (USVL1VR-Ls)cgylsiB331
Cucsa.195080Cp4.1LG02g15460Cucurbita pepo (Zucchini)cgycpeB0549
Cucsa.195080Cp4.1LG03g04380Cucurbita pepo (Zucchini)cgycpeB0550
Cucsa.195080MELO3C023964.2Melon (DHL92) v3.6.1cgymedB349
Cucsa.195080CsaV3_3G032260Cucumber (Chinese Long) v3cgycucB310
Cucsa.195080Cla97C10G195280Watermelon (97103) v2cgywmbB359
Cucsa.195080Bhi11G001191Wax gourdcgywgoB401
Cucsa.195080Carg07317Silver-seed gourdcarcgyB0862
Cucsa.195080Carg11229Silver-seed gourdcarcgyB0931
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.195080Wild cucumber (PI 183967)cgycpiB307
Cucsa.195080Melon (DHL92) v3.5.1cgymeB353
Cucsa.195080Cucurbita pepo (Zucchini)cgycpeB0548
Cucsa.195080Bottle gourd (USVL1VR-Ls)cgylsiB330
Cucsa.195080Melon (DHL92) v3.6.1cgymedB348
Cucsa.195080Cucumber (Chinese Long) v3cgycucB311
Cucsa.195080Wax gourdcgywgoB402
Cucsa.195080Cucurbita maxima (Rimu)cgycmaB0568
Cucsa.195080Cucurbita moschata (Rifu)cgycmoB0570