Cucsa.195080.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.195080.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	U6 snRNA-associated Sm-like protein LSm7
Location	scaffold01349 : 75689 .. 80038 (+)
Sequence length	435

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGGGCCTGACGAGAAATTGGGCCAGAGTCCAACCGTCTATGGTTTGGAGGGTTGCCTTTCCCGCCATCCACCATTCCTCTCAACGAGCAAATCTAGGGCACATTCTTTCCGCTCCTCATCACTTCCAATCAAAGTAAGCTTCAATTCACTCTCCTTCTTTCCACAAATTTCGGTTTTCTGCACTCTTCTTATACTCAATGTACCTTCCAGTTCTTCAATTTTTGATTTCCAGATGCATATAATGCCCTAACTTCCCCGACTTTTATTTTAATCGATCAGCACTTGGAATTTTCTCTTTTCGCCCGTAACGAAACGTCTCACTTCTCGGATATTTCAGGTTCCTGGGGCGTTTAATTTTACGGAGGAGCTGAGAAAACGATTGCGCGATGGTAAATTTCGTAACGATTTCTTCAATTAGAATATTGATTATGGCAGGCTGATTACGAAGTATAATGTGGTATTCGTATCTTTtGTTTTATCAGTCTGGAAGAAAAGAAACTGTTCTGGATTTGGCTAAGTTTGTAGACAAAGGCGTCCAAGTGAAGCTTACTGGCGGCAGACAAGGTTATTTCTAATGATTATGCTTATAGTATTACTGGACGATTGTTTGCGCTTTGTTACTTCCCGATTAGTAAGCTTTTtATTAAAGTAATCGTCTGTTGCTGTTGAGAGGATCGAGGCATATAATCTAATGTTCGATGTTGATTTTGTTTTtCTTTATGGAGCTTTCTTTATTTTtAAATGCGAGGAAATTGCTTTGTGAACCTTAGTTTTCCATTTACAGTTACTGGAACGCTCAAAGGATATGATCAATTGCTAAACCTTGTGCTGGATGAAGCTGTAGAGTTTTTAAGAGGTAACCAATTAACTGGATTCTGGCATAATATATGAGATTTGTGGAATTTTGTGGGCCTTTAGACTGAAAGCTCACTGAGTATTGATTAGTATTGTTCATATCGTTTTTCTCATTTATCATCACTTTTCTTTATCTGATTGCTATTTTAAATATATGAGAAACAATTAGAGTTAGTGTGAGAATCATTTGATATTGGATGAAAGACACTAATTAAGATTTTAATTTATCAGTAACATATGCAGGCGAAATAGTTTTTTtCTATTGTATTAATTTATATATAGTTTTTCTATTAGAATAGATACTGGTTTATTTTCTGTTGATTTATCTAATTAAGATGTGGTGATGTGATAAATAACCTTTCATGTAAAACATTGTTTTTGCTTTGCATGTTTTCTTTAAATATAATTTGAATGGATATGTTTTTtCTTTCTTTCTTTCAATAGAAAAACAAACATGGCAATAATACGATGAACTATATGAATAATTCTGTTATTTTATTTTTATTTTGAATCTTGGATATATTTTTAATTTATATTAGGCTATTGCATAAATTAGCATGCGCAATTTGCATTATTATCTTGCAAACCTTTGCATAACATAAATTTGGACTTTATTTGTATGCCCATATGCTGTTATGAGATTTCACTTGAATAAAAGTTGCAAATATGTGCAAATCTATATCAGTTGGTTTCATAATAATTTTCTTATATAAGAAGTCTTTCATAATTTATGAAAACCATGATTTTTTTCTTTCTATTGTAACTTCTAACTGGATGATTAATTAATTCATAGGGCATAAATGAAATTCTGATTGAACATGTATGTGTGTGCAATACATATAATAATAAGCAATCAATATGCATGGACAAAAGAGGAAGATAAGCTATCCCGTCTTCCAATAGGTCAATAAGGTTACTATAAGGCACTTCAATTGGTTAGAATCAGAAAGAGCTGTGACTGTTTTTTTCTTTTTTtGAAAAAaCCAGTGGTTGACCTCTAGATTATTTAACATCACATCTTCAGTGAGTAGGGTCTGGGAATACATGTCAAGGGAAGTTTCAAGAACCTCCCATCTAGCATTTCCTACTGAAATACACAGCAACTATTTAGCTTATGTACACTCAAGATATGGCTAACTACCTCACCCATGTCTCTCACCCCCAAGTATGACAGACACCAACTAACTTTATTCTCTCACATTTACTCTCCCCTTACACACTGATACGCTCTGGCTGTTGAAGGCCTATTAGGAAGGGTATACAAATTTGAGGGCAGATCTAGATGTTCTCAGAACTTATCCAAGCTCCAAACCTTGTCTTCCTAATCTTTTTGTCTCCTTCCAAAGTTCCTCCCAAAAAGCTTTGATGGTTTTGAACCACACACCATCCGATTTAAACATATGCTCACAGAGAATGTTGGAACAAGGCCGGTTTATATGTTATGGAAGCACCAATGGAAGCTGGAGTCCAGAAAGATCCAGTAGCTTAAACCTACAACAGAATGAGCAGGAAGTCCTAATAATCCTCAAAATTTCTTGTTTTTAACCAAACTTTAGACACCATTGGCTTAGAATGGAAGGTCCTTTTATAACCCTTACTTGGGGAAGGGGATGCCTTCTCACCAAGTATCAACTTGCAAATTAGTTTAGGAAACACAAGCATGGACATTTAATGTAGGTTCACTCTCGAGCAACATTTTTTATTTGCATCATTCATTGGTTAATGTACCATTTTGGTCCTTATACTCTAGGATTTACTTTTATTCCATTTTAATTCTGGTATTATACTTTCAAATATTCAAATATAATCCCTGGAATGACTACTTTCAATAAATTAGAAATATAGTCTCTACTGTTTATTTGAAGTAAATTTTGATCAAACTTGGTAAAATAATAATATTAATTTTCATTCAACAGACCATCTTTTTTCTTTATGAAGAGGTTAACACTAAGCTATTGTTAGGGATTAATTTTAAGATTTATTTGAACTTGGAACTGTATGGAATAAATTTAGACATTTGGATTTATGTGGGCTAAAATGGAATGAAACTTTAAGTTCATGGACCAAAATGATATTTTGACTTAGTTCATATTGCACATTAACAAAAAGGCTCCTTTCCAAAGGTAAGGTTTTTtATTTTCCCAAAATCCAGCTGCTTTAGTTTGGTGGTTGTATGTTTCAATCGTTTGATTTTTGTTCTGTGCCCCATTTTCTTAATCCTAAAATTCGCTTTGGTCGACTTATGGTGTACTTGGAATACATTCCCAAGTGATTAATTTAAAAAATAAGTCATTTTGGAAAAGATGTGAGTGTTAGGCAACCACTCAAAATAGCTTTTGAAGTATAGTTTACATAGATTTTATAAAGAAAGTTTAAATAAAAATGAAATTTTAAAAAAaTATTTTGTCCATAAGTCAATCAAAATGAGCCTACAGGCCCTTAGTCAGTCATGTTTATTTCTTCTGTGGTAATAGTGAACCTTTTACTGTTGTTTATTAGTAATCTTTtACAATGAACAATAAGTTAAAAATTGTCCTTGTACCTTATTCCTGATGCTTGAATGACACTGGCGGAAATTTTGATATATTGATTGTCGTTTTAATTCTTTTTCTCTTTTtTTTTCTGCAGATCCTGATGATCCATTGAAGACAACAGATCAAACCAGGCCTCTTGGCCTAATTGTATGATTCTTACTATCTACATATTTTCATCATCGTTTAAAATAAAGCAACTATGATCAAAGCTTTGGATACCATGAACTATCAATTTTTCTAAATAGTATTGTTGTCTAAGCATGCAGCTTTGGACTTCATTTTGACAATTGCAATTATCTATGCGCTAAACAGATCAAATGGTTTTAGGTAGCTTGAAAATTTCAGAGCTTTTATTTATTGTTAAAGAAAAAAGTAGCTATCATGAGATTTTCCGACTGAAGACTTCCTCTAAGGACTGGATAAAGGCCTGTGTGTTCTGACCGAGCCTGTTTCTGTCATTTGAATAAATTGTATATACTTTTGCACTGTGCAAGTGCAATCGATTTTCTCTGCTGTCCATTGCACCATGTTAAACTGACTTGAAAATTTTTtATGCTACTGCTCATTCATTTGAAACTTCTTGCGTGCTTCATACATTTTCTTACCGTCTTTTTTCTCTTTTTATTGCTGTAATTTAGGGGTTAGGCCATGGTTAACTATGTTTTGTGAAAGTTTGTTGAAAATTATAAATTATTCTACCACTCAGAAAAAGTGAAAGTTGGGCTCTTCTTGAGCGTTTTGTGCATGTGCAGAAGAAGTAAACAGGTGTTATTTAAGGCGTGCATTTTAGTTCATATAGATTCTTTTCTTGCGTATTATCTAGCAACCTCAGTATGATTAAAATTGGCATACTATTCATTTCACAGGTGTGCAGGGGGACTGCTGTAATGCTGGTGTCTCCAGTTGATGGAACAGACGAGATTGCTAACCCTTTCATCCAACCCGATGGTGCATAG

mRNA sequence

ATGATTGGGCCTGACGAGAAATTGGGCCAGAGTCCAACCGTCTATGGTTTGGAGGGTTGCCTTTCCCGCCATCCACCATTCCTCTCAACGAGCAAATCTAGGGCACATTCTTTCCGCTCCTCATCACTTCCAATCAAATCTGGAAGAAAAGAAACTGTTCTGGATTTGGCTAAGTTTGTAGACAAAGGCGTCCAAGTGAAGCTTACTGGCGGCAGACAAGTTACTGGAACGCTCAAAGGATATGATCAATTGCTAAACCTTGTGCTGGATGAAGCTGTAGAGTTTTTAAGAGATCCTGATGATCCATTGAAGACAACAGATCAAACCAGGCCTCTTGGCCTAATTGTGTGCAGGGGGACTGCTGTAATGCTGGTGTCTCCAGTTGATGGAACAGACGAGATTGCTAACCCTTTCATCCAACCCGATGGTGCATAG

Coding sequence (CDS)

ATGATTGGGCCTGACGAGAAATTGGGCCAGAGTCCAACCGTCTATGGTTTGGAGGGTTGCCTTTCCCGCCATCCACCATTCCTCTCAACGAGCAAATCTAGGGCACATTCTTTCCGCTCCTCATCACTTCCAATCAAATCTGGAAGAAAAGAAACTGTTCTGGATTTGGCTAAGTTTGTAGACAAAGGCGTCCAAGTGAAGCTTACTGGCGGCAGACAAGTTACTGGAACGCTCAAAGGATATGATCAATTGCTAAACCTTGTGCTGGATGAAGCTGTAGAGTTTTTAAGAGATCCTGATGATCCATTGAAGACAACAGATCAAACCAGGCCTCTTGGCCTAATTGTGTGCAGGGGGACTGCTGTAATGCTGGTGTCTCCAGTTGATGGAACAGACGAGATTGCTAACCCTTTCATCCAACCCGATGGTGCATAG

Protein sequence

MIGPDEKLGQSPTVYGLEGCLSRHPPFLSTSKSRAHSFRSSSLPIKSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA*

Homology

[Close]

BLAST of Cucsa.195080.1 vs. Swiss-Prot
Match: LSM7_ARATH (Sm-like protein LSM7 OS=Arabidopsis thaliana GN=LSM7 PE=1 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 6.5e-43
Identity = 87/93 (93.55%), Postives = 90/93 (96.77%), Query Frame = 1


Query: 47  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT 106
           SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEF+RD DDPLKTT
Sbjct: 2   SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTT 61

Query: 107 DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFI 140
           DQTR LGLIVCRGTAVMLVSP DGT+EIANPF+
Sbjct: 62  DQTRRLGLIVCRGTAVMLVSPTDGTEEIANPFV 94

[Close]

BLAST of Cucsa.195080.1 vs. Swiss-Prot
Match: LSM7_HUMAN (U6 snRNA-associated Sm-like protein LSm7 OS=Homo sapiens GN=LSM7 PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.3e-27
Identity = 55/96 (57.29%), Postives = 75/96 (78.12%), Query Frame = 1


Query: 49  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQ 108
           +KE++LDL+K++DK ++VK  GGR+ +G LKG+D LLNLVLD  +E++RDPDD  K T+ 
Sbjct: 8   KKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTED 67

Query: 109 TRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 145
           TR LGL+VCRGT+V+L+ P DG + I NPFIQ   A
Sbjct: 68  TRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDA 103

[Close]

BLAST of Cucsa.195080.1 vs. Swiss-Prot
Match: LSM7_MOUSE (U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus GN=Lsm7 PE=1 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 5.0e-27
Identity = 53/92 (57.61%), Postives = 74/92 (80.43%), Query Frame = 1


Query: 49  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQ 108
           +KE++LDL+K++DK ++VK  GGR+ +G LKG+D LLNLVLD  +E++RDPDD  K T+ 
Sbjct: 8   KKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQYKLTED 67

Query: 109 TRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQ 141
           TR LGL+VCRGT+V+L+ P DG + I NPF+Q
Sbjct: 68  TRQLGLVVCRGTSVVLICPQDGMEAIPNPFVQ 99

[Close]

BLAST of Cucsa.195080.1 vs. Swiss-Prot
Match: LSM7_SCHPO (U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lsm7 PE=1 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 6.2e-25
Identity = 54/103 (52.43%), Postives = 79/103 (76.70%), Query Frame = 1


Query: 40  SSSLPIKSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDP 99
           +SS P +  RKE++LDL+++ D+ +Q   TGGRQ+TG LKG+DQL+NLVLD+  E LR+P
Sbjct: 12  NSSQPTERPRKESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNP 71

Query: 100 DDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD 143
           +D  K T   R LGL+V RGT ++L++P+DG++EI NPF+Q +
Sbjct: 72  EDG-KLTGAIRKLGLVVVRGTTLVLIAPMDGSEEIPNPFVQAE 113

[Close]

BLAST of Cucsa.195080.1 vs. Swiss-Prot
Match: LSM7_DICDI (Probable U6 snRNA-associated Sm-like protein LSm7 OS=Dictyostelium discoideum GN=lsm7 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 6.2e-25
Identity = 52/90 (57.78%), Postives = 71/90 (78.89%), Query Frame = 1


Query: 49  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQ 108
           +KE++LDL KF+ K + VK TGGR+V G LKGYDQL+N+ LD+  EF+RD +DPL TTD+
Sbjct: 8   KKESILDLQKFLGKEICVKFTGGREVQGILKGYDQLVNITLDQTQEFIRDAEDPLITTDE 67

Query: 109 TRPLGLIVCRGTAVMLVSPVDGTDEIANPF 139
            R LGL+VCRG++VM+V P +G + I NP+
Sbjct: 68  KRFLGLVVCRGSSVMMVCPTEGCEPIDNPY 97

[Close]

BLAST of Cucsa.195080.1 vs. TrEMBL
Match: A0A0A0LD28_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G697950 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.4e-47
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1


Query: 47  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT 106
           SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT
Sbjct: 2   SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT 61

Query: 107 DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 145
           DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Sbjct: 62  DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99

[Close]

BLAST of Cucsa.195080.1 vs. TrEMBL
Match: W1PP03_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00022p00235920 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 2.6e-46
Identity = 93/99 (93.94%), Postives = 98/99 (98.99%), Query Frame = 1


Query: 46  KSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 105
           ++GRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDPLKT
Sbjct: 49  ENGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT 108

Query: 106 TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 145
           TDQTRPLGLIVCRGTAVMLVSP DGTDEI+NPF+QPDGA
Sbjct: 109 TDQTRPLGLIVCRGTAVMLVSPTDGTDEISNPFVQPDGA 147

[Close]

BLAST of Cucsa.195080.1 vs. TrEMBL
Match: V7CN49_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G171900g PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 3.4e-46
Identity = 96/98 (97.96%), Postives = 96/98 (97.96%), Query Frame = 1


Query: 47  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT 106
           SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT
Sbjct: 2   SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT 61

Query: 107 DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 145
           DQTR LGLIVCRGTAVMLVSP DGTDEIANPFIQPDGA
Sbjct: 62  DQTRQLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA 99

[Close]

BLAST of Cucsa.195080.1 vs. TrEMBL
Match: A0A0S3SB92_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G128600 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 3.4e-46
Identity = 96/98 (97.96%), Postives = 96/98 (97.96%), Query Frame = 1


Query: 47  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT 106
           SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT
Sbjct: 2   SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT 61

Query: 107 DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 145
           DQTR LGLIVCRGTAVMLVSP DGTDEIANPFIQPDGA
Sbjct: 62  DQTRQLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA 99

[Close]

BLAST of Cucsa.195080.1 vs. TrEMBL
Match: A0A0L9V5J1_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g105400 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 3.4e-46
Identity = 96/98 (97.96%), Postives = 96/98 (97.96%), Query Frame = 1


Query: 47  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT 106
           SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT
Sbjct: 2   SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT 61

Query: 107 DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 145
           DQTR LGLIVCRGTAVMLVSP DGTDEIANPFIQPDGA
Sbjct: 62  DQTRQLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA 99

[Close]

BLAST of Cucsa.195080.1 vs. TAIR10
Match: AT2G03870.2 (AT2G03870.2 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 174.9 bits (442), Expect = 3.7e-44
Identity = 87/93 (93.55%), Postives = 90/93 (96.77%), Query Frame = 1


Query: 47  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT 106
           SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEF+RD DDPLKTT
Sbjct: 2   SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTT 61

Query: 107 DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFI 140
           DQTR LGLIVCRGTAVMLVSP DGT+EIANPF+
Sbjct: 62  DQTRRLGLIVCRGTAVMLVSPTDGTEEIANPFV 94

[Close]

BLAST of Cucsa.195080.1 vs. TAIR10
Match: AT2G23930.1 (AT2G23930.1 probable small nuclear ribonucleoprotein G)

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-09
Identity = 30/75 (40.00%), Postives = 48/75 (64.00%), Query Frame = 1


Query: 55  DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGL 114
           DL K++DK +Q+KL   R VTGTL+G+DQ +NLV+D  VE        +   D+T  +G+
Sbjct: 9   DLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE--------VNGNDKT-DIGM 68

Query: 115 IVCRGTAVMLVSPVD 130
           +V RG +++ V  ++
Sbjct: 69  VVIRGNSIVTVEALE 74

[Close]

BLAST of Cucsa.195080.1 vs. TAIR10
Match: AT3G11500.1 (AT3G11500.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 58.5 bits (140), Expect = 3.9e-09
Identity = 28/75 (37.33%), Postives = 44/75 (58.67%), Query Frame = 1


Query: 55  DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGL 114
           DL K++DK +Q+KL   R V GTL+G+DQ +NLV+D  VE            D    +G+
Sbjct: 9   DLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEV---------NGDDKTDIGM 68

Query: 115 IVCRGTAVMLVSPVD 130
           +V RG +++ V  ++
Sbjct: 69  VVIRGNSIVTVEALE 74

[Close]

BLAST of Cucsa.195080.1 vs. NCBI nr
Match: gi|449463763|ref|XP_004149601.1| (PREDICTED: sm-like protein LSM7 [Cucumis sativus])

HSP 1 Score: 197.2 bits (500), Expect = 2.0e-47
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1


Query: 47  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT 106
           SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT
Sbjct: 2   SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT 61

Query: 107 DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 145
           DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Sbjct: 62  DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99

[Close]

BLAST of Cucsa.195080.1 vs. NCBI nr
Match: gi|769805309|ref|XP_011625467.1| (PREDICTED: sm-like protein LSM7 [Amborella trichopoda])

HSP 1 Score: 193.7 bits (491), Expect = 2.2e-46
Identity = 94/98 (95.92%), Postives = 97/98 (98.98%), Query Frame = 1


Query: 47  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT 106
           SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDPLKTT
Sbjct: 2   SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTT 61

Query: 107 DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 145
           DQTRPLGLIVCRGTAVMLVSP DGTDEI+NPF+QPDGA
Sbjct: 62  DQTRPLGLIVCRGTAVMLVSPTDGTDEISNPFVQPDGA 99

[Close]

BLAST of Cucsa.195080.1 vs. NCBI nr
Match: gi|548853744|gb|ERN11727.1| (hypothetical protein AMTR_s00022p00235920 [Amborella trichopoda])

HSP 1 Score: 193.0 bits (489), Expect = 3.7e-46
Identity = 93/99 (93.94%), Postives = 98/99 (98.99%), Query Frame = 1


Query: 46  KSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 105
           ++GRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDPLKT
Sbjct: 49  ENGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT 108

Query: 106 TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 145
           TDQTRPLGLIVCRGTAVMLVSP DGTDEI+NPF+QPDGA
Sbjct: 109 TDQTRPLGLIVCRGTAVMLVSPTDGTDEISNPFVQPDGA 147

[Close]

BLAST of Cucsa.195080.1 vs. NCBI nr
Match: gi|593791244|ref|XP_007158661.1| (hypothetical protein PHAVU_002G171900g [Phaseolus vulgaris])

HSP 1 Score: 192.6 bits (488), Expect = 4.8e-46
Identity = 96/98 (97.96%), Postives = 96/98 (97.96%), Query Frame = 1


Query: 47  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT 106
           SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT
Sbjct: 2   SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT 61

Query: 107 DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 145
           DQTR LGLIVCRGTAVMLVSP DGTDEIANPFIQPDGA
Sbjct: 62  DQTRQLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA 99

[Close]

BLAST of Cucsa.195080.1 vs. NCBI nr
Match: gi|590724772|ref|XP_007052562.1| (Small nuclear ribonucleoprotein family protein [Theobroma cacao])

HSP 1 Score: 192.2 bits (487), Expect = 6.3e-46
Identity = 96/98 (97.96%), Postives = 96/98 (97.96%), Query Frame = 1


Query: 47  SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT 106
           SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT
Sbjct: 2   SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT 61

Query: 107 DQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 145
           DQTR LGLIVCRGTAVMLVSP DGTDEIANPFIQPDGA
Sbjct: 62  DQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA 99

The following BLAST results are available for this feature:

BLAST of Cucsa.195080.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LSM7_ARATH	6.5e-43	93.55	Sm-like protein LSM7 OS=Arabidopsis thaliana GN=LSM7 PE=1 SV=1	[more]
LSM7_HUMAN	1.3e-27	57.29	U6 snRNA-associated Sm-like protein LSm7 OS=Homo sapiens GN=LSM7 PE=1 SV=1	[more]
LSM7_MOUSE	5.0e-27	57.61	U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus GN=Lsm7 PE=1 SV=1	[more]
LSM7_SCHPO	6.2e-25	52.43	U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces pombe (strain 97...	[more]
LSM7_DICDI	6.2e-25	57.78	Probable U6 snRNA-associated Sm-like protein LSm7 OS=Dictyostelium discoideum GN...	[more]

BLAST of Cucsa.195080.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LD28_CUCSA	1.4e-47	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G697950 PE=4 SV=1	[more]
W1PP03_AMBTC	2.6e-46	93.94	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00022p00235920 PE=4 SV=...	[more]
V7CN49_PHAVU	3.4e-46	97.96	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G171900g PE=4 SV=1	[more]
A0A0S3SB92_PHAAN	3.4e-46	97.96	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G128600 PE=...	[more]
A0A0L9V5J1_PHAAN	3.4e-46	97.96	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g105400 PE=4 SV=1	[more]

BLAST of Cucsa.195080.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G03870.2	3.7e-44	93.55	Small nuclear ribonucleoprotein family protein	[more]
AT2G23930.1	1.3e-09	40.00	probable small nuclear ribonucleoprotein G	[more]
AT3G11500.1	3.9e-09	37.33	Small nuclear ribonucleoprotein family protein	[more]

BLAST of Cucsa.195080.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449463763\|ref\|XP_004149601.1\|	2.0e-47	100.00	PREDICTED: sm-like protein LSM7 [Cucumis sativus]	[more]
gi\|769805309\|ref\|XP_011625467.1\|	2.2e-46	95.92	PREDICTED: sm-like protein LSM7 [Amborella trichopoda]	[more]
gi\|548853744\|gb\|ERN11727.1\|	3.7e-46	93.94	hypothetical protein AMTR_s00022p00235920 [Amborella trichopoda]	[more]
gi\|593791244\|ref\|XP_007158661.1\|	4.8e-46	97.96	hypothetical protein PHAVU_002G171900g [Phaseolus vulgaris]	[more]
gi\|590724772\|ref\|XP_007052562.1\|	6.3e-46	97.96	Small nuclear ribonucleoprotein family protein [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001163	LSM_dom_euk/arc
IPR010920	LSM_dom_sf

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005732	small nucleolar ribonucleoprotein complex
cellular_component	GO:0019013	viral nucleocapsid
molecular_function	GO:0003723	RNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.195080	Cucsa.195080	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.195080.1	Cucsa.195080.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.195080.1.CDS.1	Cucsa.195080.1.CDS.1	CDS
Cucsa.195080.1.CDS.2	Cucsa.195080.1.CDS.2	CDS
Cucsa.195080.1.CDS.3	Cucsa.195080.1.CDS.3	CDS
Cucsa.195080.1.CDS.4	Cucsa.195080.1.CDS.4	CDS
Cucsa.195080.1.CDS.5	Cucsa.195080.1.CDS.5	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 55..127 score: 2.9
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 54..127 score: 1.4
IPR010920	LSM domain	unknown	SSF50182	Sm-like ribonucleoproteins	coord: 56..130 score: 5.52
None	No IPR available	GENE3D	G3DSA:2.30.30.100		coord: 49..137 score: 6.1
None	No IPR available	PANTHER	PTHR10553	SMALL NUCLEAR RIBONUCLEOPROTEIN	coord: 30..142 score: 3.6