CmaCh01G002200 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh01G002200
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionSmall nuclear ribonucleoprotein family protein
LocationCma_Chr01 : 1006876 .. 1011266 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACAAAAAAAAAATTAAAACTTCTCAATAAAAAAAAAAACGTTTTAATTTTTTTTTTTTCTTTTCGTAATTCACTTTATTCGAATCGGGTAATCGGGCCGGAAGAGGAATTGGGCCGGAGTCCAACTGTCCATGATTTGGAGGGCACATTTCTCTCAACGAGCAAATCTAGGGCACATTCTTTGCGCTCATCACCGCTTCCATTGAAAAGTAAGCTGCAATTACAGCATAAATTTCAGTTTTAATCACTTCTCTTTTGGTTCTTTGGTTTCAGTTCTTCAATTTGATTTCCAGACGCATAATCTCGTAACTTTGCCAAGTTTATTTGAGTCGACTAGCATACGGGATTTTCCGTTTGCGCTCGTTGTAATTTGTTTCATTTCTTGAATGTTTCAGGTTTGTGGTTCATTTAATTTCACAGAGGAGCTGAGAAAACTGTTGTACGATGGTAAATTTCTGATGGATTGGTTCAATTAGAATATATGTGATTGTTGATTACGAAGTATAATGTGGTATTCGTTGTCTGTTTATCAGTCTGGAAGAAAAGAAACTGTTCTGGATTTGGCTAAGTTTGTGGACAAAGGCGTCCAAGTCAAGCTCACTGGCGGCAGACAAGGTTGTTTATTTTTAATACCTTCATTGTATTACTGCCACTCGGATACGATTCGTTACATTCTGATTAGTTTTTCTTTTTATTCATATATATGTTCATGTGTTACGATCAAGAGGTTCAAGCAGATAGTTGAATGTTTGATGTCGAGTGTTTTTTTTTTTGTTCGTTCTTCCTGTTTCTAAATGCAAGAAGAGTGCTTTATGAATCTTGTTTTCCATTGATAGTTACGGGAACGCTCAAAGGATATGATCAATTGCTAAACCTTGTGCTGGATGAAGCTGTAGAGTTTTTAAGAGGTAACCAATTTACTGGATACTGGCAGAATGGATGAGATTTGTGATGTTTTGTAGTGCATAGACTTAACGTTTGCCGAGTTATTGATTAGTAGCTTTCATACAATTTTTCTATTTGTTGAGAGGTATAATGTGATCCGAGGAACTCTTAAGACCGACACTCTCTATCATCTGTTGCACTTGAAAAATAATTTTGAAATTTATTTTTGTTGGTCTTTTTGGCATTCTAACACATGCTGGGGATGCACATAGGCACATTGATAGTGGTAAAAAAAAAACGTAATTCCAGAAAAAAAAATAAAATAATCATTGAAAATGAGACTGAAAATCCTTTCACATTGGGCCAAAGTAAGCATAGCTCAATGGTAATTGCCATGTACTTCTTCCTTTGAGGTTAGAGATTCAAATCCTCATGCCCCATATTTTTTGTAACTTGTACTAAAAACATCATTTTATATTGGACAAAGATGCAAAAATTAAGAATTTAAATTATAAGGAACATAACAAATTAACAATTTTTCTGCAAGAACAGAAAAAGGTTTCTTTTCTTTTTGTTCAGCTGATTAAGATGTGGCAGTGTAGTTAATAATGTTTCGTTTGAAGTATGGATTTTGTTATACATGCTTTCCTTAAGCATATTTTCAATGGATATGTTTGTTTTTTTCAAAAGAAAACAGACATGTCATTGATATGATGAAACATATAAATCATCATTTTATTTTATTTTTATTTCGAAACTAGGACATATTTAAGAACTAGTAGTAGGCTATTGCATAAATTAGAATGCTCAATTTGCATTATTATCTTGTAAAACCCTTACATCGTATAAATTTTTACATTTTGTATACTTACACTCTATTATAAGATTTCATTTAAATAGAAGTTACAAAAATATGAGAATCTATATTATTGAGTCACAATATTTGAAAACCCCCCTTTTTTCTTTCTATTGTTACTTGTAATTGGATGGTTAATCAATTTATAGGCATAAATGAAATTCTGAATGAAAATTTATGCATGTGCAATACATGCTATGATAAGTAATCGAATTCATACAAAAGGCGGGGACAAAAGAGGAAGATAAGCAACCTCATCTTCCAATAGGCCAATAAGGTTAGGGTATTTAGATGAAATGAGTCTCAAAGCTCCAAAACTTGTCTTTGTAATCTTTCTGTGTCTCTCCTTCCTTAGCTCCCCACAAAAAAGCATTGTTGGGTTTGAACAGTTATATCCTAGTTGACATGCTTGCAGGGACCATTGGCACAAGACCTGATTATTTGTTATGGAAGCACCATTGAAGGTCGGAAACTTCCATAGCTTATTCCAGAACGTAATAGGTGGGAAATGCTTTTAGTCTTAATTTCCTTTGTAAAAAATGCACCATTTAGGAGACTATACTTTATTAGGGAGCTTCTTCTGAATTCTATCCACGGTGTTGGTATGCTCTTGCACCAAGATTCAAAGAACAAACTAGACCATCTTTGTAGCCCTAGCCTTCCAAATAGCCTGGGAGAGGCATTTCCTAACATTCTAGGGTGTGTAAAGAAATCATATAATGGTAGTAAAAGATTCATTTAGGAAGTGGTAATGAATTCATGGACTTTCATCTGGGTTTGCACCTCCGTTTACTGTCTCATTCACCAAGCATGAACTTACAAATTAGATCAAGAAACACAAGCATGGAAATGCAATATAGTCCTGACTCTGGGAAACTGTTTTTATTGGCATCATAGTTCCTATTACACATACTAACAACCTTCAGAGGATCTTTCCCCCAAGGCAAGTTTTTTTTTGTGCTCCTCAATTCAGTTGCTTTTATTGGTGGTTATGTGCTTCTATTGTTTTGATATTTATCTTGTCCACCATTTTCTTTATTTCCAAAGTCTCTTCTACTGACCGGCTAGTTAGTTATGTTTATATCTTTTGTTTTTATAATGGCCTTTTACCTTCTGTTCATTACGAACCTTAAATTCAAATATTGTCCTTATACCTGTTCCTGCTATGCTTTTGATGGCGCTGCAGAAAATATCTGATATATTGACTAAAGTTTTTTTTTTCTTTTCTGCAGATTCCGATGATCCATTGAAGACAACAGATCAAACCAGGCGCCTTGGCCTAATTGTATAATTCTTACACCTTGGATACAACGAAAATTTTTATCAATTTTTTAGCACAGAATTTTATTGTTTACGCATGCCACTAAGGACTTCATTTTGACAATTGCAATTGTCTGTGCGCTAAACAGATTAGATGGTCTCAATTAACGTGAAAATTTCAGGGTTTTTCTTTGTTTTTAAATAATCCTTTCTTTTAACAAGAAAAAAGAAGGCATCATAATTTACTTCTGTTTGAAAACTTCTCCTTTATGGACTGGACGAAATACTGTGTGCTCCGGCTGAGCATGTTTCTATCCTTTGAATACTTGTATTTTTCTTATCTGCTATCACATGCACCATTTTAAACTGACTTGCGAACTATTTATACTACTGATTCACTCTGAACTTTTTATTTTTTTTTGAATTTTAGTGGTTAGGGCATGGTTAACCATTTCTTGTGATAATTTAAATTATTTTATCACGAGGAAAAAGTGAGAGCTTGGCTCTTCTTAAGCGTGCATGTGTAAAAGGAGAAAGGAAATGCTCTAAATGGCGTGCTTCTTTGTTCATAGTTTCTTTTCTTTAGTAACGAGCCTGTGTGATCAATATGCATACTATTCACTGCAGGTTTGCAGGGGGACTGCTGTAATGCTCGTGTCTCCAGTTGATGGTACAGATGAGATTGCTAACCCCTTTATCCAACCGGATGGTGCATAGATGTAATTTTTGTGAACTCTAATTTCCCTGTTCTGTATCTGAATATCTAGTTTCACTATTACTTTGTGATTCCACCCCCCACCCCTCAAACAATTGAGTTTCAACCCTTCTATGGACGTGGAGAACTTATCCATGTGAAGTAAAATGGTGAAATTTTGTTAACTTATGTCTATCTTACTGCTTTCTTTGATGTTACTGTTTTTTGGGTATCTTCACCTTGGATACCTTCTAAGTCTTAAGAGTCCATAAAGATGTGATGGCATTGCCCAATAAGCTGTTGCCTGATACTGACAAAGAACTGATGGTGTAGAAAGTGACATGGATCCTGCTTGTTTGGCCGACAGAGGATTTCTTTTGTTGATAGCCCAACTTGTTCTTTTAAGGCACATGTGACTTTATGCCAACTATGTGAGCTGCAACTTGTGCCGGTAAGCTTTTCCAGACTCTTCAAGTAGTTTTCAAATTAATTTCCTTTTTCCATTGGAGTATTCTTATATATTCCATGACTTGCAAAAGAGGGAAACAATATCAGGCACATTGCATGCAATCCTTCCCCCCCTTTTTGCAGTGCACTGTTTTCCATGGCTTTTTTAGCTCACTGACTTCTAAGCACAGAAAAGTAAAGCAGTGTATCTCTGATTCCCCTTCCCCATACCCGAGCGTTCTTTCTTCCC

mRNA sequence

ACAAAAAAAAAATTAAAACTTCTCAATAAAAAAAAAAACGTTTTAATTTTTTTTTTTTCTTTTCGTAATTCACTTTATTCGAATCGGGTAATCGGGCCGGAAGAGGAATTGGGCCGGAGTCCAACTGTCCATGATTTGGAGGGCACATTTCTCTCAACGAGCAAATCTAGGGCACATTCTTTGCGCTCATCACCGCTTCCATTGAAAAGTTTGTGGTTCATTTAATTTCACAGAGGAGCTGAGAAAACTGTTGTACGATGTCTGGAAGAAAAGAAACTGTTCTGGATTTGGCTAAGTTTGTGGACAAAGGCGTCCAAGTCAAGCTCACTGGCGGCAGACAAGTTACGGGAACGCTCAAAGGATATGATCAATTGCTAAACCTTGTGCTGGATGAAGCTGTAGAGTTTTTAAGAGATTCCGATGATCCATTGAAGACAACAGATCAAACCAGGCGCCTTGGCCTAATTGTTTGCAGGGGGACTGCTGTAATGCTCGTGTCTCCAGTTGATGGTACAGATGAGATTGCTAACCCCTTTATCCAACCGGATGGTGCATAGATGTAATTTTTGTGAACTCTAATTTCCCTGTTCTGTATCTGAATATCTAGTTTCACTATTACTTTGTGATTCCACCCCCCACCCCTCAAACAATTGAGTTTCAACCCTTCTATGGACGTGGAGAACTTATCCATGTGAAGTAAAATGGTGAAATTTTGTTAACTTATGTCTATCTTACTGCTTTCTTTGATGTTACTGTTTTTTGGGTATCTTCACCTTGGATACCTTCTAAGTCTTAAGAGTCCATAAAGATGTGATGGCATTGCCCAATAAGCTGTTGCCTGATACTGACAAAGAACTGATGGTGTAGAAAGTGACATGGATCCTGCTTGTTTGGCCGACAGAGGATTTCTTTTGTTGATAGCCCAACTTGTTCTTTTAAGGCACATGTGACTTTATGCCAACTATGTGAGCTGCAACTTGTGCCGGTAAGCTTTTCCAGACTCTTCAAGTAGTTTTCAAATTAATTTCCTTTTTCCATTGGAGTATTCTTATATATTCCATGACTTGCAAAAGAGGGAAACAATATCAGGCACATTGCATGCAATCCTTCCCCCCCTTTTTGCAGTGCACTGTTTTCCATGGCTTTTTTAGCTCACTGACTTCTAAGCACAGAAAAGTAAAGCAGTGTATCTCTGATTCCCCTTCCCCATACCCGAGCGTTCTTTCTTCCC

Coding sequence (CDS)

ATGTCTGGAAGAAAAGAAACTGTTCTGGATTTGGCTAAGTTTGTGGACAAAGGCGTCCAAGTCAAGCTCACTGGCGGCAGACAAGTTACGGGAACGCTCAAAGGATATGATCAATTGCTAAACCTTGTGCTGGATGAAGCTGTAGAGTTTTTAAGAGATTCCGATGATCCATTGAAGACAACAGATCAAACCAGGCGCCTTGGCCTAATTGTTTGCAGGGGGACTGCTGTAATGCTCGTGTCTCCAGTTGATGGTACAGATGAGATTGCTAACCCCTTTATCCAACCGGATGGTGCATAG

Protein sequence

MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Homology
[Close]
BLAST of CmaCh01G002200 vs. Swiss-Prot
Match: LSM7_ARATH (Sm-like protein LSM7 OS=Arabidopsis thaliana GN=LSM7 PE=1 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.1e-45
Identity = 89/94 (94.68%), Postives = 92/94 (97.87%), Query Frame = 1 

Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEF+RD DDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKT 60

Query: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFI 95
          TDQTRRLGLIVCRGTAVMLVSP DGT+EIANPF+
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPTDGTEEIANPFV 94

[Close]
BLAST of CmaCh01G002200 vs. Swiss-Prot
Match: LSM7_HUMAN (U6 snRNA-associated Sm-like protein LSm7 OS=Homo sapiens GN=LSM7 PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 9.0e-28
Identity = 54/96 (56.25%), Postives = 75/96 (78.12%), Query Frame = 1 

Query: 4   RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKTTDQ 63
           +KE++LDL+K++DK ++VK  GGR+ +G LKG+D LLNLVLD  +E++RD DD  K T+ 
Sbjct: 8   KKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTED 67

Query: 64  TRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TR+LGL+VCRGT+V+L+ P DG + I NPFIQ   A
Sbjct: 68  TRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDA 103

[Close]
BLAST of CmaCh01G002200 vs. Swiss-Prot
Match: LSM7_MOUSE (U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus GN=Lsm7 PE=1 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.6e-27
Identity = 52/92 (56.52%), Postives = 74/92 (80.43%), Query Frame = 1 

Query: 4  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKTTDQ 63
          +KE++LDL+K++DK ++VK  GGR+ +G LKG+D LLNLVLD  +E++RD DD  K T+ 
Sbjct: 8  KKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQYKLTED 67

Query: 64 TRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQ 96
          TR+LGL+VCRGT+V+L+ P DG + I NPF+Q
Sbjct: 68 TRQLGLVVCRGTSVVLICPQDGMEAIPNPFVQ 99

[Close]
BLAST of CmaCh01G002200 vs. Swiss-Prot
Match: LSM7_DICDI (Probable U6 snRNA-associated Sm-like protein LSm7 OS=Dictyostelium discoideum GN=lsm7 PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 3.8e-26
Identity = 52/90 (57.78%), Postives = 72/90 (80.00%), Query Frame = 1 

Query: 4  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKTTDQ 63
          +KE++LDL KF+ K + VK TGGR+V G LKGYDQL+N+ LD+  EF+RD++DPL TTD+
Sbjct: 8  KKESILDLQKFLGKEICVKFTGGREVQGILKGYDQLVNITLDQTQEFIRDAEDPLITTDE 67

Query: 64 TRRLGLIVCRGTAVMLVSPVDGTDEIANPF 94
           R LGL+VCRG++VM+V P +G + I NP+
Sbjct: 68 KRFLGLVVCRGSSVMMVCPTEGCEPIDNPY 97

[Close]
BLAST of CmaCh01G002200 vs. Swiss-Prot
Match: LSM7_SCHPO (U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lsm7 PE=1 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 6.1e-24
Identity = 50/94 (53.19%), Postives = 74/94 (78.72%), Query Frame = 1 

Query: 4   RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKTTDQ 63
           RKE++LDL+++ D+ +Q   TGGRQ+TG LKG+DQL+NLVLD+  E LR+ +D  K T  
Sbjct: 21  RKESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDG-KLTGA 80

Query: 64  TRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD 98
            R+LGL+V RGT ++L++P+DG++EI NPF+Q +
Sbjct: 81  IRKLGLVVVRGTTLVLIAPMDGSEEIPNPFVQAE 113

[Close]
BLAST of CmaCh01G002200 vs. TrEMBL
Match: A0A067LFY7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16737 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 9.4e-48
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 1 

Query: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT 60
           MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE+LRDSDDPLKT
Sbjct: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEYLRDSDDPLKT 60

Query: 61  TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TDQTRRLGLIVCRGTAVMLVSP DGTDEIANPFIQPDGA
Sbjct: 61  TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA 99

[Close]
BLAST of CmaCh01G002200 vs. TrEMBL
Match: A9PBG1_POPTR (Small nuclear ribonucleoprotein OS=Populus trichocarpa GN=POPTR_0001s27630g PE=2 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 1.2e-47
Identity = 96/99 (96.97%), Postives = 98/99 (98.99%), Query Frame = 1 

Query: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT 60
           MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRD+DDPLKT
Sbjct: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKT 60

Query: 61  TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TDQTRRLGLIVCRGTAVMLVSP DGTDEIANPF+QPDGA
Sbjct: 61  TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFVQPDGA 99

[Close]
BLAST of CmaCh01G002200 vs. TrEMBL
Match: A0A0D2P698_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G036100 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 1.2e-47
Identity = 97/99 (97.98%), Postives = 97/99 (97.98%), Query Frame = 1 

Query: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT 60
           MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRD DDPLKT
Sbjct: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDQDDPLKT 60

Query: 61  TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TDQTRRLGLIVCRGTAVMLVSP DGTDEIANPFIQPDGA
Sbjct: 61  TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA 99

[Close]
BLAST of CmaCh01G002200 vs. TrEMBL
Match: A0A166DN70_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_006299 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 1.2e-47
Identity = 96/99 (96.97%), Postives = 98/99 (98.99%), Query Frame = 1 

Query: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT 60
           MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRD+DDPLKT
Sbjct: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKT 60

Query: 61  TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TDQTRRLGLIVCRGTAVMLVSP DGTDEIANPF+QPDGA
Sbjct: 61  TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFVQPDGA 99

[Close]
BLAST of CmaCh01G002200 vs. TrEMBL
Match: A0A061DVC4_THECC (Small nuclear ribonucleoprotein family protein OS=Theobroma cacao GN=TCM_005909 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 1.6e-47
Identity = 97/99 (97.98%), Postives = 97/99 (97.98%), Query Frame = 1 

Query: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT 60
           MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRD DDPLKT
Sbjct: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60

Query: 61  TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TDQTRRLGLIVCRGTAVMLVSP DGTDEIANPFIQPDGA
Sbjct: 61  TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA 99

[Close]
BLAST of CmaCh01G002200 vs. TAIR10
Match: AT2G03870.2 (AT2G03870.2 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 182.6 bits (462), Expect = 1.2e-46
Identity = 89/94 (94.68%), Postives = 92/94 (97.87%), Query Frame = 1 

Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEF+RD DDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKT 60

Query: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFI 95
          TDQTRRLGLIVCRGTAVMLVSP DGT+EIANPF+
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPTDGTEEIANPFV 94

[Close]
BLAST of CmaCh01G002200 vs. TAIR10
Match: AT2G23930.1 (AT2G23930.1 probable small nuclear ribonucleoprotein G)

HSP 1 Score: 60.8 bits (146), Expect = 5.3e-10
Identity = 30/75 (40.00%), Postives = 48/75 (64.00%), Query Frame = 1 

Query: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKTTDQTRRLGL 69
          DL K++DK +Q+KL   R VTGTL+G+DQ +NLV+D  VE        +   D+T  +G+
Sbjct: 9  DLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE--------VNGNDKT-DIGM 68

Query: 70 IVCRGTAVMLVSPVD 85
          +V RG +++ V  ++
Sbjct: 69 VVIRGNSIVTVEALE 74

[Close]
BLAST of CmaCh01G002200 vs. TAIR10
Match: AT3G11500.1 (AT3G11500.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 59.7 bits (143), Expect = 1.2e-09
Identity = 31/75 (41.33%), Postives = 48/75 (64.00%), Query Frame = 1 

Query: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKTTDQTRRLGL 69
          DL K++DK +Q+KL   R V GTL+G+DQ +NLV+D  VE   + DD    TD    +G+
Sbjct: 9  DLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEV--NGDD---KTD----IGM 68

Query: 70 IVCRGTAVMLVSPVD 85
          +V RG +++ V  ++
Sbjct: 69 VVIRGNSIVTVEALE 74

[Close]
BLAST of CmaCh01G002200 vs. NCBI nr
Match: gi|802555615|ref|XP_012065535.1| (PREDICTED: sm-like protein LSM7 [Jatropha curcas])

HSP 1 Score: 197.2 bits (500), Expect = 1.3e-47
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 1 

Query: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT 60
           MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE+LRDSDDPLKT
Sbjct: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEYLRDSDDPLKT 60

Query: 61  TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TDQTRRLGLIVCRGTAVMLVSP DGTDEIANPFIQPDGA
Sbjct: 61  TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA 99

[Close]
BLAST of CmaCh01G002200 vs. NCBI nr
Match: gi|224059650|ref|XP_002299952.1| (small nuclear ribonucleoprotein [Populus trichocarpa])

HSP 1 Score: 196.8 bits (499), Expect = 1.8e-47
Identity = 96/99 (96.97%), Postives = 98/99 (98.99%), Query Frame = 1 

Query: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT 60
           MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRD+DDPLKT
Sbjct: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKT 60

Query: 61  TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TDQTRRLGLIVCRGTAVMLVSP DGTDEIANPF+QPDGA
Sbjct: 61  TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFVQPDGA 99

[Close]
BLAST of CmaCh01G002200 vs. NCBI nr
Match: gi|823146690|ref|XP_012473248.1| (PREDICTED: sm-like protein LSM7 [Gossypium raimondii])

HSP 1 Score: 196.8 bits (499), Expect = 1.8e-47
Identity = 97/99 (97.98%), Postives = 97/99 (97.98%), Query Frame = 1 

Query: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT 60
           MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRD DDPLKT
Sbjct: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDQDDPLKT 60

Query: 61  TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TDQTRRLGLIVCRGTAVMLVSP DGTDEIANPFIQPDGA
Sbjct: 61  TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA 99

[Close]
BLAST of CmaCh01G002200 vs. NCBI nr
Match: gi|590724772|ref|XP_007052562.1| (Small nuclear ribonucleoprotein family protein [Theobroma cacao])

HSP 1 Score: 196.4 bits (498), Expect = 2.3e-47
Identity = 97/99 (97.98%), Postives = 97/99 (97.98%), Query Frame = 1 

Query: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT 60
           MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRD DDPLKT
Sbjct: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60

Query: 61  TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TDQTRRLGLIVCRGTAVMLVSP DGTDEIANPFIQPDGA
Sbjct: 61  TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA 99

[Close]
BLAST of CmaCh01G002200 vs. NCBI nr
Match: gi|596012037|ref|XP_007218644.1| (hypothetical protein PRUPE_ppa013852mg [Prunus persica])

HSP 1 Score: 196.1 bits (497), Expect = 3.0e-47
Identity = 97/99 (97.98%), Postives = 97/99 (97.98%), Query Frame = 1 

Query: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT 60
           MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT
Sbjct: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT 60

Query: 61  TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TDQTRRLGLIVCRGTAVMLVSP DGTDEIANPF QPDGA
Sbjct: 61  TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFSQPDGA 99

The following BLAST results are available for this feature:
BLAST of CmaCh01G002200 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LSM7_ARATH2.1e-4594.68Sm-like protein LSM7 OS=Arabidopsis thaliana GN=LSM7 PE=1 SV=1[more]
LSM7_HUMAN9.0e-2856.25U6 snRNA-associated Sm-like protein LSm7 OS=Homo sapiens GN=LSM7 PE=1 SV=1[more]
LSM7_MOUSE2.6e-2756.52U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus GN=Lsm7 PE=1 SV=1[more]
LSM7_DICDI3.8e-2657.78Probable U6 snRNA-associated Sm-like protein LSm7 OS=Dictyostelium discoideum GN... [more]
LSM7_SCHPO6.1e-2453.19U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces pombe (strain 97... [more]
BLAST of CmaCh01G002200 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A067LFY7_JATCU9.4e-4897.98Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16737 PE=4 SV=1[more]
A9PBG1_POPTR1.2e-4796.97Small nuclear ribonucleoprotein OS=Populus trichocarpa GN=POPTR_0001s27630g PE=2... [more]
A0A0D2P698_GOSRA1.2e-4797.98Uncharacterized protein OS=Gossypium raimondii GN=B456_004G036100 PE=4 SV=1[more]
A0A166DN70_DAUCA1.2e-4796.97Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_006299 PE=4 SV=1[more]
A0A061DVC4_THECC1.6e-4797.98Small nuclear ribonucleoprotein family protein OS=Theobroma cacao GN=TCM_005909 ... [more]
BLAST of CmaCh01G002200 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G03870.21.2e-4694.68 Small nuclear ribonucleoprotein family protein[more]
AT2G23930.15.3e-1040.00 probable small nuclear ribonucleoprotein G[more]
AT3G11500.11.2e-0941.33 Small nuclear ribonucleoprotein family protein[more]
BLAST of CmaCh01G002200 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|802555615|ref|XP_012065535.1|1.3e-4797.98PREDICTED: sm-like protein LSM7 [Jatropha curcas][more]
gi|224059650|ref|XP_002299952.1|1.8e-4796.97small nuclear ribonucleoprotein [Populus trichocarpa][more]
gi|823146690|ref|XP_012473248.1|1.8e-4797.98PREDICTED: sm-like protein LSM7 [Gossypium raimondii][more]
gi|590724772|ref|XP_007052562.1|2.3e-4797.98Small nuclear ribonucleoprotein family protein [Theobroma cacao][more]
gi|596012037|ref|XP_007218644.1|3.0e-4797.98hypothetical protein PRUPE_ppa013852mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf
IPR017132Lsm7
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005732small nucleolar ribonucleoprotein complex
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0000956 nuclear-transcribed mRNA catabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0005732 small nucleolar ribonucleoprotein complex
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005575 cellular_component
molecular_function GO:0003723 RNA binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh01G002200.1CmaCh01G002200.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 10..82
score: 1.7
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 9..82
score: 1.2
IPR010920LSM domainunknownSSF50182Sm-like ribonucleoproteinscoord: 11..85
score: 3.48
IPR017132Sm-like protein Lsm7/snRNP-GPIRPIRSF037188Lsm7coord: 1..98
score: 1.3
NoneNo IPR availableGENE3DG3DSA:2.30.30.100coord: 5..92
score: 4.0
NoneNo IPR availablePANTHERPTHR10553SMALL NUCLEAR RIBONUCLEOPROTEINcoord: 1..97
score: 9.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh01G002200Cucsa.195080Cucumber (Gy14) v1cgycmaB0569
CmaCh01G002200Cla017258Watermelon (97103) v1cmawmB416
CmaCh01G002200Csa3G697950Cucumber (Chinese Long) v2cmacuB453
CmaCh01G002200MELO3C023964Melon (DHL92) v3.5.1cmameB426
CmaCh01G002200ClCG10G012490Watermelon (Charleston Gray)cmawcgB387
CmaCh01G002200CSPI03G29780Wild cucumber (PI 183967)cmacpiB456
CmaCh01G002200CmoCh01G002310Cucurbita moschata (Rifu)cmacmoB468
CmaCh01G002200CmoCh14G010310Cucurbita moschata (Rifu)cmacmoB462
CmaCh01G002200Lsi03G012140Bottle gourd (USVL1VR-Ls)cmalsiB422
CmaCh01G002200Cp4.1LG02g15460Cucurbita pepo (Zucchini)cmacpeB491
CmaCh01G002200Cp4.1LG03g04380Cucurbita pepo (Zucchini)cmacpeB494
CmaCh01G002200MELO3C023964.2Melon (DHL92) v3.6.1cmamedB489
CmaCh01G002200CsaV3_3G032260Cucumber (Chinese Long) v3cmacucB0545
CmaCh01G002200Cla97C10G195280Watermelon (97103) v2cmawmbB445
CmaCh01G002200Bhi11G001191Wax gourdcmawgoB0553
CmaCh01G002200CsGy3G027610Cucumber (Gy14) v2cgybcmaB366
CmaCh01G002200Carg11229Silver-seed gourdcarcmaB1134
CmaCh01G002200Carg07317Silver-seed gourdcarcmaB1059
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh01G002200CmaCh14G010150Cucurbita maxima (Rimu)cmacmaB255
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh01G002200Silver-seed gourdcarcmaB0498
CmaCh01G002200Silver-seed gourdcarcmaB0626
CmaCh01G002200Cucumber (Chinese Long) v3cmacucB0595
CmaCh01G002200Watermelon (97103) v2cmawmbB509
CmaCh01G002200Watermelon (97103) v2cmawmbB518
CmaCh01G002200Wax gourdcmawgoB0608
CmaCh01G002200Cucurbita maxima (Rimu)cmacmaB360
CmaCh01G002200Cucurbita maxima (Rimu)cmacmaB440
CmaCh01G002200Cucurbita moschata (Rifu)cmacmoB466
CmaCh01G002200Cucurbita moschata (Rifu)cmacmoB490
CmaCh01G002200Wild cucumber (PI 183967)cmacpiB502
CmaCh01G002200Cucumber (Chinese Long) v2cmacuB496
CmaCh01G002200Melon (DHL92) v3.5.1cmameB404
CmaCh01G002200Watermelon (Charleston Gray)cmawcgB378
CmaCh01G002200Watermelon (Charleston Gray)cmawcgB384
CmaCh01G002200Watermelon (97103) v1cmawmB408
CmaCh01G002200Watermelon (97103) v1cmawmB414
CmaCh01G002200Cucurbita pepo (Zucchini)cmacpeB465
CmaCh01G002200Cucurbita pepo (Zucchini)cmacpeB472
CmaCh01G002200Bottle gourd (USVL1VR-Ls)cmalsiB418
CmaCh01G002200Cucumber (Gy14) v2cgybcmaB938
CmaCh01G002200Melon (DHL92) v3.6.1cmamedB461