Carg05289 (gene) Silver-seed gourd

Overview
NameCarg05289
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionTranscription elongation factor
LocationCucurbita_argyrosperma_scaffold_010 : 960982 .. 962928 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCGATTGGATTTGGATGATTTCCGGACCATACTTGATACAGCCGGCGTCGATGTTTGGACCTTCATCGATACAGCTATGGAGGTCGCTTCAATGGATTACGGCAATCAATTGAAAAATCGAAGAGATGGAATCGTCGAGAGGCTCTATACGTTGACCTCGCATCCGTCGCGATGTCGGAACTGCGATACGGATCGCCACCCCGACGGCCGCTCTAATGGCTGTGAAATCAAACAGAGCTCCGCCGAGGCGAAGGATGGTTCCCCTTCGACGCCGCAGTTCGTCGGAGTTGAAGGGGACGACGATAGAGTAGACCCATATGGCGGTTCGTTTGATGATGAACAGAAGACGGTTTTAGAAATTAAGGAGCAGCTCGAAATTCCTCACCAGGTCTTCTTCCTCTCTGATTGTTTGGCCTTTGGGGATTCTTTTCTGAACTTACCAATTTGGTGATTGTTTGTCTTGTTTAAGCCTGAAGATGCTTTGGTTGATCTGCTTCAAAACTTGGCAGACATGGATATCACATTCCAAGCTCTTAAGGTTTCTGTTGCTGTAATTCTTTTGAATTTGTGGGTTCTGTTGCTTTCTTCTTCTCTGTTTCTTACCTGTTCTTGTTCTTGTTCTTGTTTTTGTATAGGAAACTGATATTGGAAGGCATGTGAATCGGTTAAGGAAGCATTCATCTAATGATGTTCGTAGATTGGTGAAACATCTTGTCAGGTTCATAACAATTTATATATGAATTCATGACCGATGCTTGGTGAATTTCTGCTCATTTGTGTGTTTTTCATAGGAAATGGAAGGATATTGTGGATGAATGGGTCAGGTTGAATCAGCCAGGGGAGCAGCCAGCTTCATTAATAGGTATCAAATAAGAACATCATGCTTAACTTCATGATTCAATTCCTTCCGACATGATTTAGAACTCAAAAATTTAGCTAAGAAAGGTTTCTACTGCCATTCACAGCTGATGGCGACTCACCTCAACAAAAACTTCCTCAAAATGGTTACCATCTGGTGAATTGAAATCATTGATCTTATGATTCTAATGTTTGTGTTCTTTGTAGAAAAAGCTTGAAATCTTTCTTCTTTTTTATAGGTTCCTGATTTCGCATACTCTCCGAATCCTCACAGTGAGTATCAAATTCGAATCATACGCGAACTTCTTGTTTCATTTGCCATCGTTTACTTACTATGGATTTCATTGTGTTCTTAGATGGAAGTTCTGGGTCGGATCGAAATAACTCAGAGCCAGAACCGAAAGGAAAGCCTATGCCAAGACGAGACGCTCCGCCTAAACCAGCACAACCAGCTTCAACGTCGTCTTTAACTCCTCAAAACGTATGGTAACCAAATTAGAGTCGTTTAACTCTACGTTTGGTTGCCAAAAATGGAGGATGAAAATTGAACTTTCGAATCTTATGCTTCCGAAAACATAACAAACTTAACTCAAACTGCATCAATTGTGTTGAAATTTGACAAATTTGAGTGGTATGTCTGAATTTTCTCGGGTCCTAGATGATATGATATGATATGATATGATATGCACGGTCTTACTTACATTACAGTCTGCCAGTTCTTATTTTCATTAAGAAGGTGTTCTTATTATATGTTATTTGCAGAAACATAAAGAACAACAGAAGGAAGCAAATTTTGATTCACAAAAGCTTGCTTCAGCTAGAAAAAGGCTTCAAGAGAATTACAAAGAAGCTGAAAATGGTTTGGCTACACCTTTCTTTTTCTTCCCTTTTACTTCATTTTCTGATTCCTTAGGAACAAATCAATACTAATTACTGTTTGTCTGTTGCTCTTATTGAAGCTAAGAGGCAAAGAACAATCCAAGTCATGGACATCCATGACTTACCAAAGCCAAAGAATACCTTCTTCTCAAAGAATAAAGGCGGCGGCGGTGGCGGCGGCGGCTCTCAAGGCAGGCACTGGTGA

mRNA sequence

ATGGTTCGATTGGATTTGGATGATTTCCGGACCATACTTGATACAGCCGGCGTCGATGTTTGGACCTTCATCGATACAGCTATGGAGGTCGCTTCAATGGATTACGGCAATCAATTGAAAAATCGAAGAGATGGAATCGTCGAGAGGCTCTATACGTTGACCTCGCATCCGTCGCGATGTCGGAACTGCGATACGGATCGCCACCCCGACGGCCGCTCTAATGGCTGTGAAATCAAACAGAGCTCCGCCGAGGCGAAGGATGGTTCCCCTTCGACGCCGCAGTTCGTCGGAGTTGAAGGGGACGACGATAGAGTAGACCCATATGGCGGTTCGTTTGATGATGAACAGAAGACGGTTTTAGAAATTAAGGAGCAGCTCGAAATTCCTCACCAGCCTGAAGATGCTTTGGTTGATCTGCTTCAAAACTTGGCAGACATGGATATCACATTCCAAGCTCTTAAGGAAACTGATATTGGAAGGCATGTGAATCGGTTAAGGAAGCATTCATCTAATGATGTTCGTAGATTGGTGAAACATCTTGTCAGGAAATGGAAGGATATTGTGGATGAATGGGTCAGGTTGAATCAGCCAGGGGAGCAGCCAGCTTCATTAATAGCTGATGGCGACTCACCTCAACAAAAACTTCCTCAAAATGGTTACCATCTGGTTCCTGATTTCGCATACTCTCCGAATCCTCACAATGGAAGTTCTGGGTCGGATCGAAATAACTCAGAGCCAGAACCGAAAGGAAAGCCTATGCCAAGACGAGACGCTCCGCCTAAACCAGCACAACCAGCTTCAACGTCGTCTTTAACTCCTCAAAACAAACATAAAGAACAACAGAAGGAAGCAAATTTTGATTCACAAAAGCTTGCTTCAGCTAGAAAAAGGCTTCAAGAGAATTACAAAGAAGCTGAAAATGCTAAGAGGCAAAGAACAATCCAAGTCATGGACATCCATGACTTACCAAAGCCAAAGAATACCTTCTTCTCAAAGAATAAAGGCGGCGGCGGTGGCGGCGGCGGCTCTCAAGGCAGGCACTGGTGA

Coding sequence (CDS)

ATGGTTCGATTGGATTTGGATGATTTCCGGACCATACTTGATACAGCCGGCGTCGATGTTTGGACCTTCATCGATACAGCTATGGAGGTCGCTTCAATGGATTACGGCAATCAATTGAAAAATCGAAGAGATGGAATCGTCGAGAGGCTCTATACGTTGACCTCGCATCCGTCGCGATGTCGGAACTGCGATACGGATCGCCACCCCGACGGCCGCTCTAATGGCTGTGAAATCAAACAGAGCTCCGCCGAGGCGAAGGATGGTTCCCCTTCGACGCCGCAGTTCGTCGGAGTTGAAGGGGACGACGATAGAGTAGACCCATATGGCGGTTCGTTTGATGATGAACAGAAGACGGTTTTAGAAATTAAGGAGCAGCTCGAAATTCCTCACCAGCCTGAAGATGCTTTGGTTGATCTGCTTCAAAACTTGGCAGACATGGATATCACATTCCAAGCTCTTAAGGAAACTGATATTGGAAGGCATGTGAATCGGTTAAGGAAGCATTCATCTAATGATGTTCGTAGATTGGTGAAACATCTTGTCAGGAAATGGAAGGATATTGTGGATGAATGGGTCAGGTTGAATCAGCCAGGGGAGCAGCCAGCTTCATTAATAGCTGATGGCGACTCACCTCAACAAAAACTTCCTCAAAATGGTTACCATCTGGTTCCTGATTTCGCATACTCTCCGAATCCTCACAATGGAAGTTCTGGGTCGGATCGAAATAACTCAGAGCCAGAACCGAAAGGAAAGCCTATGCCAAGACGAGACGCTCCGCCTAAACCAGCACAACCAGCTTCAACGTCGTCTTTAACTCCTCAAAACAAACATAAAGAACAACAGAAGGAAGCAAATTTTGATTCACAAAAGCTTGCTTCAGCTAGAAAAAGGCTTCAAGAGAATTACAAAGAAGCTGAAAATGCTAAGAGGCAAAGAACAATCCAAGTCATGGACATCCATGACTTACCAAAGCCAAAGAATACCTTCTTCTCAAAGAATAAAGGCGGCGGCGGTGGCGGCGGCGGCTCTCAAGGCAGGCACTGGTGA

Protein sequence

MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRCRNCDTDRHPDGRSNGCEIKQSSAEAKDGSPSTPQFVGVEGDDDRVDPYGGSFDDEQKTVLEIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKDIVDEWVRLNQPGEQPASLIADGDSPQQKLPQNGYHLVPDFAYSPNPHNGSSGSDRNNSEPEPKGKPMPRRDAPPKPAQPASTSSLTPQNKHKEQQKEANFDSQKLASARKRLQENYKEAENAKRQRTIQVMDIHDLPKPKNTFFSKNKGGGGGGGGSQGRHW
Homology
[Close]
BLAST of Carg05289 vs. NCBI nr
Match: XP_022962950.1 (probable mediator of RNA polymerase II transcription subunit 26c [Cucurbita moschata] >XP_022962951.1 probable mediator of RNA polymerase II transcription subunit 26c [Cucurbita moschata])

HSP 1 Score: 568.2 bits (1463), Expect = 2.0e-158
Identity = 339/348 (97.41%), Postives = 340/348 (97.70%), Query Frame = 0 

Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRC 60

Query: 61  RNCDTDRHPDGRSNGCEIKQSSAEAKDGSPSTPQFVGVEGDDDRVDPYGGSFDDEQKTVL 120
           RNCDTDRHPDGRSNGCEIKQS AEAK+GSPSTPQFVGVEGDDDRVDPYGGSFDDEQK VL
Sbjct: 61  RNCDTDRHPDGRSNGCEIKQSFAEAKEGSPSTPQFVGVEGDDDRVDPYGGSFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKDIVDEWVRLNQPGEQPASLIADGDSPQQKLPQNGYHLVPDFAYSPNPHNXXXXXX 240
           VRKWKDIVDEWVRLNQPGEQ ASLIADGDSPQQKLPQNGYH VPDFAYSPNPHN XXXXX
Sbjct: 181 VRKWKDIVDEWVRLNQPGEQTASLIADGDSPQQKLPQNGYHQVPDFAYSPNPHNGXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQNKHKEQQKEANFDSQKLASARKRLQE 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  PQNKHKEQQKEANFDSQKLASARKRLQE
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTPQNKHKEQQKEANFDSQKLASARKRLQE 300

Query: 301 NYKEAENAKRQRTIQVMDIHDLPKPKNTFXXXXXXXXXXXXXXQGRHW 349
           NYKEAENAKRQRTIQVMDIHDLPKPKNTF XXXXXXXXXXXXXQGRHW
Sbjct: 301 NYKEAENAKRQRTIQVMDIHDLPKPKNTFFXXXXXXXXXXXXXQGRHW 348

[Close]
BLAST of Carg05289 vs. NCBI nr
Match: XP_023003476.1 (probable mediator of RNA polymerase II transcription subunit 26c [Cucurbita maxima] >XP_023003477.1 probable mediator of RNA polymerase II transcription subunit 26c [Cucurbita maxima])

HSP 1 Score: 540.8 bits (1392), Expect = 3.4e-150
Identity = 315/348 (90.52%), Postives = 317/348 (91.09%), Query Frame = 0 

Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRC 60

Query: 61  RNCDTDRHPDGRSNGCEIKQSSAEAKDGSPSTPQFVGVEGDDDRVDPYGGSFDDEQKTVL 120
           RNCDTDRHPDGRSNGCEIKQSS EAK+GSPSTPQFV VEGDDDRVDPYGGSFDDEQK VL
Sbjct: 61  RNCDTDRHPDGRSNGCEIKQSSVEAKEGSPSTPQFVEVEGDDDRVDPYGGSFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKDIVDEWVRLNQPGEQPASLIADGDSPQQKLPQNGYHLVPDFAYSPNPHNXXXXXX 240
           VRKWKDIVDEWVRLNQPGEQPASLIADGDSPQQK+PQNGYH VPDFA       XXXXXX
Sbjct: 181 VRKWKDIVDEWVRLNQPGEQPASLIADGDSPQQKVPQNGYHQVPDFAXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQNKHKEQQKEANFDSQKLASARKRLQE 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXX     PQNKHKEQQKEANFDS KLASARKRLQE
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXTLSLTPQNKHKEQQKEANFDSLKLASARKRLQE 300

Query: 301 NYKEAENAKRQRTIQVMDIHDLPKPKNTFXXXXXXXXXXXXXXQGRHW 349
           NYKEAENAKRQRTIQVMDIHDLPKPKNTF              QGRHW
Sbjct: 301 NYKEAENAKRQRTIQVMDIHDLPKPKNTF---FSKNKGGGGGSQGRHW 345

[Close]
BLAST of Carg05289 vs. NCBI nr
Match: XP_023518861.1 (probable mediator of RNA polymerase II transcription subunit 26c [Cucurbita pepo subsp. pepo] >XP_023518862.1 probable mediator of RNA polymerase II transcription subunit 26c [Cucurbita pepo subsp. pepo])

HSP 1 Score: 530.0 bits (1364), Expect = 6.0e-147
Identity = 327/348 (93.97%), Postives = 331/348 (95.11%), Query Frame = 0 

Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRC 60

Query: 61  RNCDTDRHPDGRSNGCEIKQSSAEAKDGSPSTPQFVGVEGDDDRVDPYGGSFDDEQKTVL 120
           RNCDTDRH DGRSNGCEIKQSSAEAK+GSPSTPQFVGVEGDDDRVDPYGGSFDDEQK VL
Sbjct: 61  RNCDTDRHLDGRSNGCEIKQSSAEAKEGSPSTPQFVGVEGDDDRVDPYGGSFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           +IKEQLEIPHQPEDALVDLLQ+LADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 DIKEQLEIPHQPEDALVDLLQSLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKDIVDEWVRLNQPGEQPASLIADGDSPQQKLPQNGYHLVPDFAYSPNPHNXXXXXX 240
           VRKWKDIVDEWVRLNQPGEQPASLIADGDSPQQK+PQNGYH             XXXXXX
Sbjct: 181 VRKWKDIVDEWVRLNQPGEQPASLIADGDSPQQKVPQNGYHQXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQNKHKEQQKEANFDSQKLASARKRLQE 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX QNKHKEQQKEANFDSQKLASARKRLQE
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNKHKEQQKEANFDSQKLASARKRLQE 300

Query: 301 NYKEAENAKRQRTIQVMDIHDLPKPKNTFXXXXXXXXXXXXXXQGRHW 349
           NYKEAENAKRQRTIQVMDIHDLPKPKNTF XXXXXXXXXXXXXQGRHW
Sbjct: 301 NYKEAENAKRQRTIQVMDIHDLPKPKNTFFXXXXXXXXXXXXXQGRHW 348

[Close]
BLAST of Carg05289 vs. NCBI nr
Match: XP_022950583.1 (probable mediator of RNA polymerase II transcription subunit 26c [Cucurbita moschata])

HSP 1 Score: 521.5 bits (1342), Expect = 2.1e-144
Identity = 270/348 (77.59%), Postives = 282/348 (81.03%), Query Frame = 0 

Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLY LTS P+RC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYALTSPPTRC 60

Query: 61  RNCDTDRHPDGRSNGCEIKQSSAEAKDGSPSTPQFVGVEGDDDRVDPYGGSFDDEQKTVL 120
           RNCDTDR+ DGRSNGCEIKQS  EAK+ SPSTPQFV VEGDD+ VDPYGG FDDEQK VL
Sbjct: 61  RNCDTDRYNDGRSNGCEIKQSPVEAKEASPSTPQFVVVEGDDEGVDPYGGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPEDALV+LLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKDIVDEWVRLNQPGEQPASLIADGDSPQQKLPQNGYHLVPDFAYSPNPHNXXXXXX 240
           VRKWK+IVDEWVRLNQPGEQ A+LIADGDSPQQK+ QNGYH VPDFAYSPNPHN      
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLIADGDSPQQKVTQNGYHQVPDFAYSPNPHNGGSGSD 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQNKHKEQQKEANFDSQKLASARKRLQE 300
                                           PQN+ KEQQKEANFDSQKLASARKRLQE
Sbjct: 241 RNNVEPEPKGKSVPRRDAPPKPAQPAPMSSYTPQNRQKEQQKEANFDSQKLASARKRLQE 300

Query: 301 NYKEAENAKRQRTIQVMDIHDLPKPKNTFXXXXXXXXXXXXXXQGRHW 349
           NYKEAENAK+QRTIQVMDIH++PKPKNTF              QGRHW
Sbjct: 301 NYKEAENAKKQRTIQVMDIHEIPKPKNTF---FSKNKGTGGGSQGRHW 345

[Close]
BLAST of Carg05289 vs. NCBI nr
Match: XP_023544969.1 (probable mediator of RNA polymerase II transcription subunit 26c [Cucurbita pepo subsp. pepo])

HSP 1 Score: 521.2 bits (1341), Expect = 2.8e-144
Identity = 269/348 (77.30%), Postives = 282/348 (81.03%), Query Frame = 0 

Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVAS+DYGNQLKNRRDGIVERLY LTS P+RC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPTRC 60

Query: 61  RNCDTDRHPDGRSNGCEIKQSSAEAKDGSPSTPQFVGVEGDDDRVDPYGGSFDDEQKTVL 120
           RNCDTDR+ DGRSNGCEIKQS  EAK+ SPSTPQFV VEGDD+ VDPYGG FDDEQK VL
Sbjct: 61  RNCDTDRYNDGRSNGCEIKQSPVEAKEASPSTPQFVVVEGDDEGVDPYGGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPEDALV+LLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKDIVDEWVRLNQPGEQPASLIADGDSPQQKLPQNGYHLVPDFAYSPNPHNXXXXXX 240
           VRKWK+IVDEWVRLNQPGEQ A+LIAD DSPQQK+PQNGYH VPDFAYSPNPHN      
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLIADSDSPQQKVPQNGYHQVPDFAYSPNPHNGGSGSD 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQNKHKEQQKEANFDSQKLASARKRLQE 300
                                           PQN+ KEQQKEANFDSQKLASARKRLQE
Sbjct: 241 RNNVEPEPKGKSVPRRDAPPKPAQPAPMSSYTPQNRQKEQQKEANFDSQKLASARKRLQE 300

Query: 301 NYKEAENAKRQRTIQVMDIHDLPKPKNTFXXXXXXXXXXXXXXQGRHW 349
           NYKEAENAK+QRTIQVMDIH++PKPKNTF              QGRHW
Sbjct: 301 NYKEAENAKKQRTIQVMDIHEIPKPKNTF---FSKNKGTGGGSQGRHW 345

[Close]
BLAST of Carg05289 vs. TAIR10
Match: AT5G09850.1 (Transcription elongation factor (TFIIS) family protein)

HSP 1 Score: 233.0 bits (593), Expect = 2.7e-61
Identity = 177/366 (48.36%), Postives = 209/366 (57.10%), Query Frame = 0 

Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRCRNC 63
           +DLDDFR+++D AGVDVWTFIDTA+ VAS+DYG +LK RRD IVERLY  TS  ++CRNC
Sbjct: 1   MDLDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYA-TSMANKCRNC 60

Query: 64  D------TDRHPDGRSNGCEI------KQSSAEAKDGSPSTPQFVGVEGDDDRVDPYGGS 123
           D            GR N   +                                 DP+ G 
Sbjct: 61  DFGGGGNVTEAAIGRVNNGRVHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDPFAGL 120

Query: 124 FDDEQKTVLEIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSN 183
           FDDEQK+++EIKE+LE P                          TDIGRHVNR+RKH SN
Sbjct: 121 FDDEQKSIVEIKEKLEDPDLXXXXXXXXXXXXXXXXXXXXXXXXTDIGRHVNRVRKHPSN 180

Query: 184 DVRRLVKHLVRKWKDIVDEWVRLNQPGE-QPASLIADGDSPQQKLPQNG-YHLVPDFAYS 243
           +VRRL K LV+KWK+ VDEWV+ NQPG+ +P SLIAD DSP QK   NG    VPDF YS
Sbjct: 181 NVRRLAKQLVKKWKETVDEWVKFNQPGDLEPPSLIADEDSPVQKALHNGSRQQVPDFGYS 240

Query: 244 PNPHN-------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQNKHKEQQK 303
           P P N                     XXXXXXXXXXXXXXXXXXXXXX  P++K   + K
Sbjct: 241 PVPQNGYSSSSKNSNITEPERKPRPVXXXXXXXXXXXXXXXXXXXXXXTIPRDK---EHK 300

Query: 304 EANFDSQKLASARKRLQENYKEAENAKRQRTIQVMDIHDLPKPKNTFXXXXXXXXXXXXX 349
           E +FD     +ARKRLQ+NY++AENAK+QRTIQVMDIHD+PKPK                
Sbjct: 301 EVDFD-----TARKRLQQNYRQAENAKKQRTIQVMDIHDIPKPKK----GGFFPRKGGSS 353

[Close]
BLAST of Carg05289 vs. TAIR10
Match: AT5G05140.1 (Transcription elongation factor (TFIIS) family protein)

HSP 1 Score: 84.3 bits (207), Expect = 1.6e-16
Identity = 71/215 (33.02%), Postives = 101/215 (46.98%), Query Frame = 0 

Query: 6   LDDFRTILDTAG-VDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRCRNCD 65
           LD +R      G  D++  ID A+ VA+ D  N+ K+RRD I E L+  +   +RC  CD
Sbjct: 7   LDSWREYFRRRGDSDIFGIIDHAIMVAATDCPNKFKSRRDKIAELLF--SCRVNRCVGCD 66

Query: 66  -----------TDRHPDGRSNG-------CEIKQSSAEAKDGSP--------STPQFVGV 125
                       +R   G   G        E+   S E+K  S         S   F   
Sbjct: 67  HLELSVPGDDEANRGTTGNGGGGTAVDEDYEVAGGSKESKANSSRGDNNQIVSNYTFDEA 126

Query: 126 EGDDDRVDPYGGSFDDEQKTVLEIKE-QLEIPHQPEDALVDLLQNLADMDITFQALKETD 185
           E   D ++     F    K V  IKE  L    +P   L+D L++L  M +    LK T+
Sbjct: 127 EALSDEIE----EFSVVSKEVARIKEILLNKEDEPNSVLLDSLRHLKLMSLNVDILKSTE 186

Query: 186 IGRHVNRLRKHSSNDVRRLVKHLVRKWKDIVDEWV 193
           IG+ VN LRKHSS+ +R+L K L+ +WK++VD+WV
Sbjct: 187 IGKAVNGLRKHSSDKIRQLAKTLIAEWKELVDQWV 215

[Close]
BLAST of Carg05289 vs. TAIR10
Match: AT3G10820.2 (Transcription elongation factor (TFIIS) family protein)

HSP 1 Score: 83.6 bits (205), Expect = 2.7e-16
Identity = 71/242 (29.34%), Postives = 116/242 (47.93%), Query Frame = 0 

Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRCRNC 63
           + LD +R        D++  ID A+ VA+ D+  + K+R D I E L+  +   SRC  C
Sbjct: 8   VSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLF--SCKVSRCIGC 67

Query: 64  DTDRHPDGRSNGCEIKQSSAEAKDGSPSTPQFVGVEGDDDRVDPYGGSFDDEQKT----- 123
           D             ++ S A    G  +  + VGV G  DR D    + + E+ +     
Sbjct: 68  D------------HLELSIA----GDEAAVEIVGVGGGGDRGDSGVATGEGEEASVSVDE 127

Query: 124 VLEIKEQLEIPHQPEDA-LVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLV 183
           V+ I++ L      +D+ L++ L+ L  M ++   LK+T+IG+ VN LR+HSS+ + +L 
Sbjct: 128 VMRIRDILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEIGKAVNGLRRHSSDKISKLA 187

Query: 184 KHLVRKWKDIVDEWVRLNQPGEQ------PASLIADGDSPQQKLPQNGYHLVPDFAYSPN 234
           K L  +WK +VD+W  +N P E       P SL       ++  P   + L     Y+P 
Sbjct: 188 KTLFAEWKRLVDQW--MNTPEEMAGTEGTPESLNLSVIDEEEAFPSPPHDL---DIYAPE 226


HSP 2 Score: 35.4 bits (80), Expect = 8.4e-02
Identity = 17/29 (58.62%), Postives = 24/29 (82.76%), Query Frame = 0 

Query: 290 KLASARKRLQENYKEAENAKRQRTIQVMD 319
           K   A+++LQE+Y + ENAKRQRTIQV++
Sbjct: 346 KFEFAKRKLQESYHQHENAKRQRTIQVLE 374

[Close]
BLAST of Carg05289 vs. Swiss-Prot
Match: sp|F4KFC7|MD26C_ARATH (Probable mediator of RNA polymerase II transcription subunit 26c OS=Arabidopsis thaliana OX=3702 GN=MED26C PE=1 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 4.9e-60
Identity = 177/366 (48.36%), Postives = 209/366 (57.10%), Query Frame = 0 

Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRCRNC 63
           +DLDDFR+++D AGVDVWTFIDTA+ VAS+DYG +LK RRD IVERLY  TS  ++CRNC
Sbjct: 1   MDLDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYA-TSMANKCRNC 60

Query: 64  D------TDRHPDGRSNGCEI------KQSSAEAKDGSPSTPQFVGVEGDDDRVDPYGGS 123
           D            GR N   +                                 DP+ G 
Sbjct: 61  DFGGGGNVTEAAIGRVNNGRVHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDPFAGL 120

Query: 124 FDDEQKTVLEIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSN 183
           FDDEQK+++EIKE+LE P                          TDIGRHVNR+RKH SN
Sbjct: 121 FDDEQKSIVEIKEKLEDPDLXXXXXXXXXXXXXXXXXXXXXXXXTDIGRHVNRVRKHPSN 180

Query: 184 DVRRLVKHLVRKWKDIVDEWVRLNQPGE-QPASLIADGDSPQQKLPQNG-YHLVPDFAYS 243
           +VRRL K LV+KWK+ VDEWV+ NQPG+ +P SLIAD DSP QK   NG    VPDF YS
Sbjct: 181 NVRRLAKQLVKKWKETVDEWVKFNQPGDLEPPSLIADEDSPVQKALHNGSRQQVPDFGYS 240

Query: 244 PNPHN-------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQNKHKEQQK 303
           P P N                     XXXXXXXXXXXXXXXXXXXXXX  P++K   + K
Sbjct: 241 PVPQNGYSSSSKNSNITEPERKPRPVXXXXXXXXXXXXXXXXXXXXXXTIPRDK---EHK 300

Query: 304 EANFDSQKLASARKRLQENYKEAENAKRQRTIQVMDIHDLPKPKNTFXXXXXXXXXXXXX 349
           E +FD     +ARKRLQ+NY++AENAK+QRTIQVMDIHD+PKPK                
Sbjct: 301 EVDFD-----TARKRLQQNYRQAENAKKQRTIQVMDIHDIPKPKK----GGFFPRKGGSS 353

[Close]
BLAST of Carg05289 vs. Swiss-Prot
Match: sp|Q9FHK9|MD26B_ARATH (Probable mediator of RNA polymerase II transcription subunit 26b OS=Arabidopsis thaliana OX=3702 GN=MED26B PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.8e-15
Identity = 71/215 (33.02%), Postives = 101/215 (46.98%), Query Frame = 0 

Query: 6   LDDFRTILDTAG-VDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRCRNCD 65
           LD +R      G  D++  ID A+ VA+ D  N+ K+RRD I E L+  +   +RC  CD
Sbjct: 7   LDSWREYFRRRGDSDIFGIIDHAIMVAATDCPNKFKSRRDKIAELLF--SCRVNRCVGCD 66

Query: 66  -----------TDRHPDGRSNG-------CEIKQSSAEAKDGSP--------STPQFVGV 125
                       +R   G   G        E+   S E+K  S         S   F   
Sbjct: 67  HLELSVPGDDEANRGTTGNGGGGTAVDEDYEVAGGSKESKANSSRGDNNQIVSNYTFDEA 126

Query: 126 EGDDDRVDPYGGSFDDEQKTVLEIKE-QLEIPHQPEDALVDLLQNLADMDITFQALKETD 185
           E   D ++     F    K V  IKE  L    +P   L+D L++L  M +    LK T+
Sbjct: 127 EALSDEIE----EFSVVSKEVARIKEILLNKEDEPNSVLLDSLRHLKLMSLNVDILKSTE 186

Query: 186 IGRHVNRLRKHSSNDVRRLVKHLVRKWKDIVDEWV 193
           IG+ VN LRKHSS+ +R+L K L+ +WK++VD+WV
Sbjct: 187 IGKAVNGLRKHSSDKIRQLAKTLIAEWKELVDQWV 215

[Close]
BLAST of Carg05289 vs. Swiss-Prot
Match: sp|F4J4Y5|MD26A_ARATH (Probable mediator of RNA polymerase II transcription subunit 26a OS=Arabidopsis thaliana OX=3702 GN=MED26A PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.8e-15
Identity = 71/242 (29.34%), Postives = 116/242 (47.93%), Query Frame = 0 

Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRCRNC 63
           + LD +R        D++  ID A+ VA+ D+  + K+R D I E L+  +   SRC  C
Sbjct: 8   VSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLF--SCKVSRCIGC 67

Query: 64  DTDRHPDGRSNGCEIKQSSAEAKDGSPSTPQFVGVEGDDDRVDPYGGSFDDEQKT----- 123
           D             ++ S A    G  +  + VGV G  DR D    + + E+ +     
Sbjct: 68  D------------HLELSIA----GDEAAVEIVGVGGGGDRGDSGVATGEGEEASVSVDE 127

Query: 124 VLEIKEQLEIPHQPEDA-LVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLV 183
           V+ I++ L      +D+ L++ L+ L  M ++   LK+T+IG+ VN LR+HSS+ + +L 
Sbjct: 128 VMRIRDILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEIGKAVNGLRRHSSDKISKLA 187

Query: 184 KHLVRKWKDIVDEWVRLNQPGEQ------PASLIADGDSPQQKLPQNGYHLVPDFAYSPN 234
           K L  +WK +VD+W  +N P E       P SL       ++  P   + L     Y+P 
Sbjct: 188 KTLFAEWKRLVDQW--MNTPEEMAGTEGTPESLNLSVIDEEEAFPSPPHDL---DIYAPE 226

[Close]
BLAST of Carg05289 vs. Swiss-Prot
Match: sp|Q96MN5|TEAN2_HUMAN (Transcription elongation factor A N-terminal and central domain-containing protein 2 OS=Homo sapiens OX=9606 GN=TCEANC2 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 2.7e-05
Identity = 32/103 (31.07%), Postives = 53/103 (51.46%), Query Frame = 0 

Query: 123 KEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVR 182
           K  LE+P Q ++ LV+ LQ L     + + LK T IG  VN++RKHS ++V  L + +  
Sbjct: 46  KTMLELPDQTKENLVEALQELKKKIPSREVLKSTRIGHTVNKMRKHSDSEVASLAREVYT 105

Query: 183 KWKDIVDEWVRLNQPGEQPASLIADGDSPQQKLPQNGYHLVPD 226
           +WK   ++    N+P     S+    D   + L +N   L+ +
Sbjct: 106 EWKTFTEK--HSNRP-----SIEVRSDPKTESLRKNAQKLLSE 141

[Close]
BLAST of Carg05289 vs. Swiss-Prot
Match: sp|B0UYI1|TEAN2_DANRE (Transcription elongation factor A N-terminal and central domain-containing protein 2 OS=Danio rerio OX=7955 GN=tceanc2 PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.7e-04
Identity = 24/69 (34.78%), Postives = 42/69 (60.87%), Query Frame = 0 

Query: 123 KEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSN-DVRRLVKHLV 182
           K  LE+P QP++ +++ L+ L     + + LK T IG  VN LRKHS + +++ L K + 
Sbjct: 45  KSILELPGQPKENMIEALKELDKKVPSREVLKSTRIGHTVNNLRKHSDDPEIKSLAKEVY 104

Query: 183 RKWKDIVDE 191
           + W+  ++E
Sbjct: 105 KHWRTFIEE 113

[Close]
BLAST of Carg05289 vs. TrEMBL
Match: tr|A0A1S3B2G2|A0A1S3B2G2_CUCME (probable mediator of RNA polymerase II transcription subunit 26c OS=Cucumis melo OX=3656 GN=LOC103485244 PE=4 SV=1)

HSP 1 Score: 517.3 bits (1331), Expect = 2.7e-143
Identity = 282/348 (81.03%), Postives = 291/348 (83.62%), Query Frame = 0 

Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVAS+DYGNQLKNRRDGIVERLY LTS PSRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60

Query: 61  RNCDTDRHPDGRSNGCEIKQSSAEAKDGSPSTPQFVGVEGDDDRVDPYGGSFDDEQKTVL 120
           RNCDTDR+ DGRSNGCEIKQ S E K  SPSTPQFV VEGDDD  DPY G FDDEQK VL
Sbjct: 61  RNCDTDRNHDGRSNGCEIKQGSGEVKGASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPEDALV+LLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKDIVDEWVRLNQPGEQPASLIADGDSPQQKLPQNGYHLVPDFAYSPNPHNXXXXXX 240
           VRKWK+IVDEWVRLNQPGEQ A+L+ADGDSPQQK PQNGYH VPDFAYSPNPHN   XXX
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQNKHKEQQKEANFDSQKLASARKRLQE 300
           XXXXXXXXXXX                     PQN+ KEQQKEANFDSQKLASARKRLQE
Sbjct: 241 XXXXXXXXXXXSVPRRDAPPKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE 300

Query: 301 NYKEAENAKRQRTIQVMDIHDLPKPKNTFXXXXXXXXXXXXXXQGRHW 349
           NYKEAENAKRQRTIQVMDIH++PKPKN F              QGRHW
Sbjct: 301 NYKEAENAKRQRTIQVMDIHEIPKPKNAF---FSKNKGSGGGSQGRHW 345

[Close]
BLAST of Carg05289 vs. TrEMBL
Match: tr|A0A0A0KHV9|A0A0A0KHV9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486670 PE=4 SV=1)

HSP 1 Score: 513.5 bits (1321), Expect = 3.8e-142
Identity = 266/348 (76.44%), Postives = 276/348 (79.31%), Query Frame = 0 

Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVAS+DYGNQLKNRRDGIVERLY LTS PSRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60

Query: 61  RNCDTDRHPDGRSNGCEIKQSSAEAKDGSPSTPQFVGVEGDDDRVDPYGGSFDDEQKTVL 120
           RNCDTDR+ DGRSNGCEIKQ S E K+ SPSTPQFV VEGDDD  DPY G FDDEQK VL
Sbjct: 61  RNCDTDRNHDGRSNGCEIKQGSGEVKEASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIP QPEDALV+LLQNLADMDITFQALKETDIGRHVNRLRKH SNDVRRLVKHL
Sbjct: 121 EIKEQLEIPQQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKHL 180

Query: 181 VRKWKDIVDEWVRLNQPGEQPASLIADGDSPQQKLPQNGYHLVPDFAYSPNPHNXXXXXX 240
           VRKWK+IVDEWVRLNQPGEQ A+L+ADGDSPQQK PQNGYH VPDFAYSPNPHN      
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQNKHKEQQKEANFDSQKLASARKRLQE 300
                                           PQN+ KEQQKEANFDSQKLASARKRLQE
Sbjct: 241 RNNSEPEPKGKSVPRRDALPKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE 300

Query: 301 NYKEAENAKRQRTIQVMDIHDLPKPKNTFXXXXXXXXXXXXXXQGRHW 349
           NYKEAENAKRQRTIQVMDIH++PKPKN F              QGRHW
Sbjct: 301 NYKEAENAKRQRTIQVMDIHEIPKPKNAF---FSKNKGSGGGSQGRHW 345

[Close]
BLAST of Carg05289 vs. TrEMBL
Match: tr|A0A061DKK6|A0A061DKK6_THECC (Transcription elongation factor (TFIIS) family protein, putative isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_001525 PE=4 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 2.1e-103
Identity = 239/349 (68.48%), Postives = 273/349 (78.22%), Query Frame = 0 

Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRCRNC 63
           +DLDDFR++L+TA VDVWTFIDTA+ VAS+DYG +LK RRD IVERLY  TS  ++CRNC
Sbjct: 1   MDLDDFRSVLETAEVDVWTFIDTAILVASLDYGPELKQRRDRIVERLYA-TSMVTQCRNC 60

Query: 64  DTDRHPDGRSNGCEIKQSSA---EAKDGSPSTPQFVGVEGDDDRVDPYGGSFDDEQKTVL 123
           D    P       ++K+ S+   + + GSP+ PQ    +  DD +DPYGG FDDEQK +L
Sbjct: 61  DFGERPSDYEVKADLKRESSHEDKRRGGSPNAPQ---SDNGDDELDPYGGLFDDEQKKIL 120

Query: 124 EIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 183
           EIKE LE PHQ ED+L+DLLQ+LADMDITFQALKETDIGRHVN LRKHSSNDVRRLVK L
Sbjct: 121 EIKEHLEEPHQSEDSLIDLLQSLADMDITFQALKETDIGRHVNILRKHSSNDVRRLVKQL 180

Query: 184 VRKWKDIVDEWVRLNQPGE-QPASLIADGDSPQQKLPQNGYHLVPDFAYSPNPHNXXXXX 243
           VRKWK+IVDEWVRLNQPGE + ++L+ADGDSPQ+K PQNGYH VPDFAYSPNPHN    X
Sbjct: 181 VRKWKEIVDEWVRLNQPGELESSALMADGDSPQRKPPQNGYHQVPDFAYSPNPHNGSSGX 240

Query: 244 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQNKHKEQQKEANFDSQKLASARKRLQ 303
           XXXXXXXXXXXXXXXXXXXXXXXX          QN+ +E QKE+NFDS++LASARKRLQ
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXTYSAPVL---QNRQRE-QKESNFDSERLASARKRLQ 300

Query: 304 ENYKEAENAKRQRTIQVMDIHDLPKPKNTFXXXXXXXXXXXXXXQGRHW 349
           ENYKEAENAKRQRTIQVMDIH+LPKPKN F              QGRHW
Sbjct: 301 ENYKEAENAKRQRTIQVMDIHELPKPKNAF-----FGKNKGGSSQGRHW 336

[Close]
BLAST of Carg05289 vs. TrEMBL
Match: tr|A0A1R3IT55|A0A1R3IT55_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_21459 PE=4 SV=1)

HSP 1 Score: 382.5 bits (981), Expect = 1.0e-102
Identity = 238/353 (67.42%), Postives = 272/353 (77.05%), Query Frame = 0 

Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRCRNC 63
           +DLDDFR++L+TAGVDVWTFIDTA+ VAS+DYG +LK RRDGIVERLY  TS  +RC+ C
Sbjct: 1   MDLDDFRSVLETAGVDVWTFIDTAILVASLDYGQELKQRRDGIVERLYA-TSMVTRCKGC 60

Query: 64  DTDRHPDGRSNGCEIKQSSA-------EAKDGSPSTPQFVGVEGDDDRVDPYGGSFDDEQ 123
           D       RSNG +I +  +       E + GSP TPQ   ++ +DD +DPYGG FDDEQ
Sbjct: 61  DFGE----RSNGHQINKEGSPHGGKREEGEKGSPFTPQ---LDNEDDDLDPYGGLFDDEQ 120

Query: 124 KTVLEIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRL 183
           K VLEIKE+LE P Q ED+LVDLLQ+LADMDITFQALKETDIGRHVN+LRKHSSN+VRRL
Sbjct: 121 KRVLEIKERLEEPDQSEDSLVDLLQSLADMDITFQALKETDIGRHVNKLRKHSSNEVRRL 180

Query: 184 VKHLVRKWKDIVDEWVRLNQPGE-QPASLIADGDSPQQKLPQNGYHLVPDFAYSPNPHNX 243
           VK LVRKWK+IVDEWVR+NQPGE + A+L+ADGDSPQQKLPQNG   VPDFAYSPNPHN 
Sbjct: 181 VKQLVRKWKEIVDEWVRVNQPGELESAALMADGDSPQQKLPQNGRQQVPDFAYSPNPHNG 240

Query: 244 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQNKHKEQQKEANFDSQKLASAR 303
                        XXXXXXXXXXXXXXXXXXXXXXX  Q   + +QKE+NFDS++LASAR
Sbjct: 241 SFGSDKNNSEPERXXXXXXXXXXXXXXXXXXXXXXXNVQ--RQREQKESNFDSERLASAR 300

Query: 304 KRLQENYKEAENAKRQRTIQVMDIHDLPKPKNTFXXXXXXXXXXXXXXQGRHW 349
           KRLQ NYKEAENAK+QRTIQVMDIH+LPKPKN F              QGRHW
Sbjct: 301 KRLQANYKEAENAKKQRTIQVMDIHELPKPKNAF-----FAKNKGGGSQGRHW 338

[Close]
BLAST of Carg05289 vs. TrEMBL
Match: tr|A0A1U8MMK4|A0A1U8MMK4_GOSHI (probable mediator of RNA polymerase II transcription subunit 26c isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC107939257 PE=4 SV=1)

HSP 1 Score: 382.5 bits (981), Expect = 1.0e-102
Identity = 229/348 (65.80%), Postives = 263/348 (75.57%), Query Frame = 0 

Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRCRNC 63
           +DLDDFR++L+TAGVDVWTFIDTA+ VAS+DYG + K RRDGIVERLY  TS  +RC++C
Sbjct: 1   MDLDDFRSVLETAGVDVWTFIDTAILVASLDYGQEFKQRRDGIVERLYA-TSMVTRCKSC 60

Query: 64  DTDRHPDGRSNGCEI--KQSSAEAKDGSPSTPQFVGVEGDDDRVDPYGGSFDDEQKTVLE 123
           D       RSN  ++  + S  E K G   +P     E +DD +DPYGG FDDEQK VLE
Sbjct: 61  DFGE----RSNVYQVNKEDSPHEGKGGGKGSPFTPHSENEDDDMDPYGGLFDDEQKRVLE 120

Query: 124 IKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLV 183
           IKE+LE+P Q ED+LVDLLQ+LADMDITFQALKETDIGRHVN+LRKHSSNDVRRLVK LV
Sbjct: 121 IKERLELPDQSEDSLVDLLQSLADMDITFQALKETDIGRHVNKLRKHSSNDVRRLVKQLV 180

Query: 184 RKWKDIVDEWVRLNQPGE-QPASLIADGDSPQQKLPQNGYHLVPDFAYSPNPHNXXXXXX 243
           RKWK+IVDEWVR+NQPGE +PA L+ADGDSPQQKLPQNG   VPDFAYSPNPHN      
Sbjct: 181 RKWKEIVDEWVRVNQPGEPEPAGLMADGDSPQQKLPQNGRQQVPDFAYSPNPHNGSFGSE 240

Query: 244 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQNKHKEQQKEANFDSQKLASARKRLQE 303
                        XXXXXXXXXXXXXXXXX   Q   + +QKE+NFDS++LASARKRLQE
Sbjct: 241 KNNSEPERKPKPIXXXXXXXXXXXXXXXXXQNVQ--RQREQKESNFDSERLASARKRLQE 300

Query: 304 NYKEAENAKRQRTIQVMDIHDLPKPKNTFXXXXXXXXXXXXXXQGRHW 349
           +YKEAENAK+QRT+QVMDIH+LPKPKN F              QGRHW
Sbjct: 301 SYKEAENAKKQRTVQVMDIHELPKPKNAF-----FAKNKGGGSQGRHW 336

The following BLAST results are available for this feature:
BLAST of Carg05289 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022962950.12.0e-15897.41probable mediator of RNA polymerase II transcription subunit 26c [Cucurbita mosc... [more]
XP_023003476.13.4e-15090.52probable mediator of RNA polymerase II transcription subunit 26c [Cucurbita maxi... [more]
XP_023518861.16.0e-14793.97probable mediator of RNA polymerase II transcription subunit 26c [Cucurbita pepo... [more]
XP_022950583.12.1e-14477.59probable mediator of RNA polymerase II transcription subunit 26c [Cucurbita mosc... [more]
XP_023544969.12.8e-14477.30probable mediator of RNA polymerase II transcription subunit 26c [Cucurbita pepo... [more]
BLAST of Carg05289 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G09850.12.7e-6148.36Transcription elongation factor (TFIIS) family protein[more]
AT5G05140.11.6e-1633.02Transcription elongation factor (TFIIS) family protein[more]
AT3G10820.22.7e-1629.34Transcription elongation factor (TFIIS) family protein[more]
BLAST of Carg05289 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|F4KFC7|MD26C_ARATH4.9e-6048.36Probable mediator of RNA polymerase II transcription subunit 26c OS=Arabidopsis ... [more]
sp|Q9FHK9|MD26B_ARATH2.8e-1533.02Probable mediator of RNA polymerase II transcription subunit 26b OS=Arabidopsis ... [more]
sp|F4J4Y5|MD26A_ARATH4.8e-1529.34Probable mediator of RNA polymerase II transcription subunit 26a OS=Arabidopsis ... [more]
sp|Q96MN5|TEAN2_HUMAN2.7e-0531.07Transcription elongation factor A N-terminal and central domain-containing prote... [more]
sp|B0UYI1|TEAN2_DANRE1.7e-0434.78Transcription elongation factor A N-terminal and central domain-containing prote... [more]
BLAST of Carg05289 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B2G2|A0A1S3B2G2_CUCME2.7e-14381.03probable mediator of RNA polymerase II transcription subunit 26c OS=Cucumis melo... [more]
tr|A0A0A0KHV9|A0A0A0KHV9_CUCSA3.8e-14276.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486670 PE=4 SV=1[more]
tr|A0A061DKK6|A0A061DKK6_THECC2.1e-10368.48Transcription elongation factor (TFIIS) family protein, putative isoform 1 OS=Th... [more]
tr|A0A1R3IT55|A0A1R3IT55_9ROSI1.0e-10267.42Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_21459 PE=4 SV=1[more]
tr|A0A1U8MMK4|A0A1U8MMK4_GOSHI1.0e-10265.80probable mediator of RNA polymerase II transcription subunit 26c isoform X2 OS=G... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR017923TFIIS_N
IPR035441TFIIS/LEDGF_dom_sf
IPR003617TFIIS/CRSP70_N_sub
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05289-RACarg05289-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 288..315
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 276..319
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 201..348
NoneNo IPR availablePANTHERPTHR15141:SF55MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATEDcoord: 7..348
NoneNo IPR availablePANTHERPTHR15141TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 3coord: 7..348
NoneNo IPR availableCDDcd00183TFIIS_Icoord: 116..189
e-value: 3.65749E-19
score: 79.2746
IPR003617Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-typeSMARTSM00509TFS2_5coord: 119..190
e-value: 4.0E-10
score: 49.6
IPR035441TFIIS/LEDGF domain superfamilyGENE3DG3DSA:1.20.930.10coord: 110..202
e-value: 9.3E-23
score: 81.8
IPR035441TFIIS/LEDGF domain superfamilySUPERFAMILYSSF47676Conserved domain common to transcription factors TFIIS, elongin A, CRSP70coord: 117..199
IPR017923Transcription factor IIS, N-terminalPFAMPF08711Med26coord: 138..188
e-value: 1.2E-13
score: 50.8
IPR017923Transcription factor IIS, N-terminalPROSITEPS51319TFIIS_Ncoord: 117..191
score: 25.221