CmoCh07G008030 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh07G008030
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionTranscription elongation factor, putative, expressed
LocationCmo_Chr07 : 3696220 .. 3698608 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCGATTGGATTTAGATGATTTCCGGACCATACTTGATACAGCCGGCGTCGATGTTTGGACCTTCATCGATACAGCTATGGAGGTCGCTTCAATGGATTACGGCAATCAATTGAAAAATCGAAGAGATGGAATCGTCGAGAGGCTCTATACGTTGACCTCGCATCCGTCGCGATGTCGGAACTGCGATACGGATCGCCACCCCGACGGCCGCTCTAATGGCTGTGAAATCAAACAGAGCTTCGCCGAGGCGAAGGAAGGTTCCCCTTCGACGCCGCAGTTCGTCGGAGTTGAAGGGGACGACGATAGAGTAGACCCATATGGCGGTTCGTTTGATGATGAACAGAAGAAGGTTTTAGAAATTAAGGAGCAGCTCGAAATTCCTCACCAGGTCTTCTTCCTCTCTGATTGTTTGGCCTTTGGGGATTCTTTTCTGAACTTACCAATTTGGTGATTGTTTGTCTTGTTTAAGCCTGAAGATGCTTTGGTTGATCTGCTTCAAAACTTGGCAGACATGGATATCACATTCCAAGCTCTTAAGGTTTCTGTTGCTGTAATTCTTTTGAATTTGTGGGTTCTGTTGCTTTCTTCTTCTCTGTTTCTTACCTGTTCTTGTTCTTGTTTAGGAAACTGATATTGGAAGGCATGTGAATCGGTTAAGGAAGCATTCATCTAATGATGTTCGTAGATTGGTGAAACATCTTGTCAGGTTCATAACAATTTATATATGAATTCATGACCGATGCTTGGTGAATTTCTGCTCATTTGTGTGTTTTTCATCAGGAAATGGAAGGATATTGTGGATGAATGGGTCAGGTTGAATCAGCCAGGGGAGCAGACAGCTTCATTAATTGGTATCAAATAAGAACATCATTCATAACTTCATGTTTCAATTCCTTCAGACATGATTTAGAACTCAAAAATTTAGCTAAGAAAGGTTTCTACTGCCATTCACAGCTGATGGCGACTCACCTCAACAAAAACTTCCTCAAAATGGTTACCATCAGGTGAATTGAAATCATTAATCTTATGATTCTAATGTTTGTGTTCTTTTGTAGAAAAAGCTTGAAATCTTTCTTCTTTTTTATAGGTTCCTGATTTCGCATACTCTCCGAATCCTCACAGTGAGTATCGAATTCAAATCATACGCGAACTTCTTGTTTCATTTGCCATCGCTTACTTACTATGGATTTCATTGTGTTCTTAGATGGAAGTTCTGGGTCGGATCGAAATAACTCAGAGCCAGAACTGAAAGGAAAGCCTATGCCAAGACGAGACGCTCCGCCTAAACCAGCACAACCAGCTTCAACGTCGTCTTTAACTCCTCAAAACGTATGGTAACCAAATTAGAGTCGTTTAACTCTACGTTTGGTTGCCAAAAGTGGAGGATGAAAATTGAACTTTCGAATCTTATGCTTCCGAAAACATAACAAACTTAACTCAAACTGCATCAATTGTGTTGAAATTTGACAAATTTGAGTGGTATGTCTGAATTTTCTCGGGTCCTAGATGATATGATATGATATGATATGATATGCACGGTCTTACTTAGATTACAGTCTGCCAGTTCTTATTTTCGTTAAGAAGGTGTTCTTATTATGTGTTATTTGCAGAAACATAAAGAACAACAGAAGGAAGCAAATTTTGATTCACAAAAGCTTGCTTCAGCTAGAAAAAGGCTTCAAGAGAATTACAAAGAAGCTGAAAATGGTTTGGTTACACCTTTCTTTTTCTTCCCTTTTACTTCATATTCTGATTCCTTGGGAACAAATCAATACTAATTACTGTTTGTCTGTTGCTCTTATTGAAGCTAAAAGGCAAAGAACAATCCAAGTCATGGACATCCATGACTTACCAAAGCCAAAGAATACCTTCTTCTCAAAGAATAAAGGCGGCGGCGGTGGCGGCGGCGGCTCTCAAGGCAGGCACTGGTGATATTTGGCAAAGCAGCAACATGTTCTGCAATATTAGGTGTTCTGTTATCATCACCCCTTACATCATTTGATCATTGAATTTTTAACTTTCTCTATTAAGTTTAAAAGAGAACCAAAATCTACTTTTTTTCAGGTAAATTTGGTTATAATAAGCAATGCTATTATTGATATTGTTCATCTGGAAGCTCTGAGTGTTTATATGCAATGCTAATGTTGAAGCTTCCTGTTATATGCAATGTGGGGTTTGTCTGGTTTGGATCATTAGTCACCCACCTTTGACCTTTGAAAAGGAAAAGGTTACTTAAGTTGGGGGGCCAGCCACATGGGGGGTTGTGTATGTGGATGGGGATTGGTTTGTTTGGCTTGTAAGTGCTTTCTCTTTGCTTGCTTCATATAATATTGTATGGAAACATGGGGCTTGGCCCAACATAAACAAAGGCTGGTTTTTCTTCA

mRNA sequence

ATGGTTCGATTGGATTTAGATGATTTCCGGACCATACTTGATACAGCCGGCGTCGATGTTTGGACCTTCATCGATACAGCTATGGAGGTCGCTTCAATGGATTACGGCAATCAATTGAAAAATCGAAGAGATGGAATCGTCGAGAGGCTCTATACGTTGACCTCGCATCCGTCGCGATGTCGGAACTGCGATACGGATCGCCACCCCGACGGCCGCTCTAATGGCTGTGAAATCAAACAGAGCTTCGCCGAGGCGAAGGAAGGTTCCCCTTCGACGCCGCAGTTCGTCGGAGTTGAAGGGGACGACGATAGAGTAGACCCATATGGCGGTTCGTTTGATGATGAACAGAAGAAGGTTTTAGAAATTAAGGAGCAGCTCGAAATTCCTCACCAGCCTGAAGATGCTTTGGTTGATCTGCTTCAAAACTTGGCAGACATGGATATCACATTCCAAGCTCTTAAGGAAACTGATATTGGAAGGCATGTGAATCGGTTAAGGAAGCATTCATCTAATGATGTTCGTAGATTGGTGAAACATCTTGTCAGGAAATGGAAGGATATTGTGGATGAATGGGTCAGGTTGAATCAGCCAGGGGAGCAGACAGCTTCATTAATTGCTGATGGCGACTCACCTCAACAAAAACTTCCTCAAAATGGTTACCATCAGGTTCCTGATTTCGCATACTCTCCGAATCCTCACAATGGAAGTTCTGGGTCGGATCGAAATAACTCAGAGCCAGAACTGAAAGGAAAGCCTATGCCAAGACGAGACGCTCCGCCTAAACCAGCACAACCAGCTTCAACGTCGTCTTTAACTCCTCAAAACAAACATAAAGAACAACAGAAGGAAGCAAATTTTGATTCACAAAAGCTTGCTTCAGCTAGAAAAAGGCTTCAAGAGAATTACAAAGAAGCTGAAAATGCTAAAAGGCAAAGAACAATCCAAGTCATGGACATCCATGACTTACCAAAGCCAAAGAATACCTTCTTCTCAAAGAATAAAGGCGGCGGCGGTGGCGGCGGCGGCTCTCAAGGCAGGCACTGGTGATATTTGGCAAAGCAGCAACATGTTCTGCAATATTAGGTAAATTTGGTTATAATAAGCAATGCTATTATTGATATTGTTCATCTGGAAGCTCTGAGTGTTTATATGCAATGCTAATGTTGAAGCTTCCTGTTATATGCAATGTGGGGTTTGTCTGGTTTGGATCATTAGTCACCCACCTTTGACCTTTGAAAAGGAAAAGGTTACTTAAGTTGGGGGGCCAGCCACATGGGGGGTTGTGTATGTGGATGGGGATTGGTTTGTTTGGCTTGTAAGTGCTTTCTCTTTGCTTGCTTCATATAATATTGTATGGAAACATGGGGCTTGGCCCAACATAAACAAAGGCTGGTTTTTCTTCA

Coding sequence (CDS)

ATGGTTCGATTGGATTTAGATGATTTCCGGACCATACTTGATACAGCCGGCGTCGATGTTTGGACCTTCATCGATACAGCTATGGAGGTCGCTTCAATGGATTACGGCAATCAATTGAAAAATCGAAGAGATGGAATCGTCGAGAGGCTCTATACGTTGACCTCGCATCCGTCGCGATGTCGGAACTGCGATACGGATCGCCACCCCGACGGCCGCTCTAATGGCTGTGAAATCAAACAGAGCTTCGCCGAGGCGAAGGAAGGTTCCCCTTCGACGCCGCAGTTCGTCGGAGTTGAAGGGGACGACGATAGAGTAGACCCATATGGCGGTTCGTTTGATGATGAACAGAAGAAGGTTTTAGAAATTAAGGAGCAGCTCGAAATTCCTCACCAGCCTGAAGATGCTTTGGTTGATCTGCTTCAAAACTTGGCAGACATGGATATCACATTCCAAGCTCTTAAGGAAACTGATATTGGAAGGCATGTGAATCGGTTAAGGAAGCATTCATCTAATGATGTTCGTAGATTGGTGAAACATCTTGTCAGGAAATGGAAGGATATTGTGGATGAATGGGTCAGGTTGAATCAGCCAGGGGAGCAGACAGCTTCATTAATTGCTGATGGCGACTCACCTCAACAAAAACTTCCTCAAAATGGTTACCATCAGGTTCCTGATTTCGCATACTCTCCGAATCCTCACAATGGAAGTTCTGGGTCGGATCGAAATAACTCAGAGCCAGAACTGAAAGGAAAGCCTATGCCAAGACGAGACGCTCCGCCTAAACCAGCACAACCAGCTTCAACGTCGTCTTTAACTCCTCAAAACAAACATAAAGAACAACAGAAGGAAGCAAATTTTGATTCACAAAAGCTTGCTTCAGCTAGAAAAAGGCTTCAAGAGAATTACAAAGAAGCTGAAAATGCTAAAAGGCAAAGAACAATCCAAGTCATGGACATCCATGACTTACCAAAGCCAAAGAATACCTTCTTCTCAAAGAATAAAGGCGGCGGCGGTGGCGGCGGCGGCTCTCAAGGCAGGCACTGGTGA
Homology
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BLAST of CmoCh07G008030 vs. Swiss-Prot
Match: MD26C_ARATH (Probable mediator of RNA polymerase II transcription subunit 26c OS=Arabidopsis thaliana GN=MED26C PE=1 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 6.3e-92
Identity = 203/367 (55.31%), Postives = 256/367 (69.75%), Query Frame = 1 

Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRCRNC 63
           +DLDDFR+++D AGVDVWTFIDTA+ VAS+DYG +LK RRD IVERLY  TS  ++CRNC
Sbjct: 1   MDLDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYA-TSMANKCRNC 60

Query: 64  D-------TDRHPDGRSNGCEIKQSFAEAKEGSPSTPQ------FVGVEGDDDRVDPYGG 123
           D       T+      +NG   +++  E +EG  +  +       V VE DDD  DP+ G
Sbjct: 61  DFGGGGNVTEAAIGRVNNGRVHEETEEEDEEGVTAAAEEEVREKSVNVEDDDD-FDPFAG 120

Query: 124 SFDDEQKKVLEIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSS 183
            FDDEQK ++EIKE+LE P   E++LV+LLQNL DMDITFQAL+ETDIGRHVNR+RKH S
Sbjct: 121 LFDDEQKSIVEIKEKLEDPDLSEESLVELLQNLEDMDITFQALQETDIGRHVNRVRKHPS 180

Query: 184 NDVRRLVKHLVRKWKDIVDEWVRLNQPGE-QTASLIADGDSPQQKLPQNG-YHQVPDFAY 243
           N+VRRL K LV+KWK+ VDEWV+ NQPG+ +  SLIAD DSP QK   NG   QVPDF Y
Sbjct: 181 NNVRRLAKQLVKKWKETVDEWVKFNQPGDLEPPSLIADEDSPVQKALHNGSRQQVPDFGY 240

Query: 244 SPNPHNGSSGSDRNN--SEPELKGKPM---PRRD--APPKPAQPASTSSLTPQNKHKEQQ 303
           SP P NG S S +N+  +EPE K +P+   PRR+  +P KP++P+ +    P++K   + 
Sbjct: 241 SPVPQNGYSSSSKNSNITEPERKPRPVAPQPRRESPSPAKPSRPSPSQQTIPRDK---EH 300

Query: 304 KEANFDSQKLASARKRLQENYKEAENAKRQRTIQVMDIHDLPKPKNTFFSKNKGGGGGGG 349
           KE +FD     +ARKRLQ+NY++AENAK+QRTIQVMDIHD+PKPK   F   KGG   G 
Sbjct: 301 KEVDFD-----TARKRLQQNYRQAENAKKQRTIQVMDIHDIPKPKKGGFFPRKGGSSQG- 353

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BLAST of CmoCh07G008030 vs. Swiss-Prot
Match: MD26A_ARATH (Probable mediator of RNA polymerase II transcription subunit 26a OS=Arabidopsis thaliana GN=MED26A PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.3e-15
Identity = 63/206 (30.58%), Postives = 104/206 (50.49%), Query Frame = 1 

Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRCRNC 63
           + LD +R        D++  ID A+ VA+ D+  + K+R D I E L++     SRC  C
Sbjct: 8   VSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLFSCKV--SRCIGC 67

Query: 64  DTDRHPDGRSNGCEIKQSFAEAKEGSPSTPQFVGVEGDDDRVDPYGGSFDDEQK-----K 123
           D             ++ S A    G  +  + VGV G  DR D    + + E+      +
Sbjct: 68  D------------HLELSIA----GDEAAVEIVGVGGGGDRGDSGVATGEGEEASVSVDE 127

Query: 124 VLEIKEQLEIPHQPEDA-LVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLV 183
           V+ I++ L      +D+ L++ L+ L  M ++   LK+T+IG+ VN LR+HSS+ + +L 
Sbjct: 128 VMRIRDILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEIGKAVNGLRRHSSDKISKLA 187

Query: 184 KHLVRKWKDIVDEWVRLNQPGEQTAS 204
           K L  +WK +VD+W  +N P E   +
Sbjct: 188 KTLFAEWKRLVDQW--MNTPEEMAGT 193

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BLAST of CmoCh07G008030 vs. Swiss-Prot
Match: MD26B_ARATH (Probable mediator of RNA polymerase II transcription subunit 26b OS=Arabidopsis thaliana GN=MED26B PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 9.9e-13
Identity = 101/387 (26.10%), Postives = 159/387 (41.09%), Query Frame = 1 

Query: 6   LDDFRTILDTAG-VDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRCRNCD 65
           LD +R      G  D++  ID A+ VA+ D  N+ K+RRD I E L++     +RC  CD
Sbjct: 7   LDSWREYFRRRGDSDIFGIIDHAIMVAATDCPNKFKSRRDKIAELLFSC--RVNRCVGCD 66

Query: 66  -----------TDRHPDGRSNG-------CEIKQSFAEAKEGSP--------STPQFVGV 125
                       +R   G   G        E+     E+K  S         S   F   
Sbjct: 67  HLELSVPGDDEANRGTTGNGGGGTAVDEDYEVAGGSKESKANSSRGDNNQIVSNYTFDEA 126

Query: 126 EGDDDRVDPYGGSFDDEQKKVLEIKE-QLEIPHQPEDALVDLLQNLADMDITFQALKETD 185
           E   D ++     F    K+V  IKE  L    +P   L+D L++L  M +    LK T+
Sbjct: 127 EALSDEIE----EFSVVSKEVARIKEILLNKEDEPNSVLLDSLRHLKLMSLNVDILKSTE 186

Query: 186 IGRHVNRLRKHSSNDVRRLVKHLVRKWKDIVDEWVRLNQ-------PGEQTASLIADGDS 245
           IG+ VN LRKHSS+ +R+L K L+ +WK++VD+WV   +         E     + D + 
Sbjct: 187 IGKAVNGLRKHSSDKIRQLAKTLIAEWKELVDQWVNTTKEITGAEGTPESANPSVLDEEE 246

Query: 246 PQQKLP---------QNGY---HQVPDFAYSPNP-----HNGSSGSDR---NNSEPELKG 305
               LP          NG+   H      +  NP     HN S   +R   N ++ + +G
Sbjct: 247 AFPSLPYDVDIFTPEPNGFEISHFFDSLDFDGNPRNSEEHNTSREHERRPQNIAKRKPEG 306

Query: 306 KPMPRRDAPPKPAQPASTSSLTPQNKHKEQQKEANFDSQKLA---SARKRLQENYKEAEN 335
             M  +DAP +  +P+S +      +  +Q  E    ++ ++   S +  +Q      E 
Sbjct: 307 TQMRIQDAPFRSIKPSSATDFDGTRRPVKQSTEQRMKNETVSVHKSEKPMIQRKPVVTEQ 366

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BLAST of CmoCh07G008030 vs. TrEMBL
Match: A0A0A0KHV9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486670 PE=4 SV=1)

HSP 1 Score: 605.1 bits (1559), Expect = 5.2e-170
Identity = 309/348 (88.79%), Postives = 319/348 (91.67%), Query Frame = 1 

Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVAS+DYGNQLKNRRDGIVERLY LTS PSRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60

Query: 61  RNCDTDRHPDGRSNGCEIKQSFAEAKEGSPSTPQFVGVEGDDDRVDPYGGSFDDEQKKVL 120
           RNCDTDR+ DGRSNGCEIKQ   E KE SPSTPQFV VEGDDD  DPY G FDDEQKKVL
Sbjct: 61  RNCDTDRNHDGRSNGCEIKQGSGEVKEASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIP QPEDALV+LLQNLADMDITFQALKETDIGRHVNRLRKH SNDVRRLVKHL
Sbjct: 121 EIKEQLEIPQQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKHL 180

Query: 181 VRKWKDIVDEWVRLNQPGEQTASLIADGDSPQQKLPQNGYHQVPDFAYSPNPHNGSSGSD 240
           VRKWK+IVDEWVRLNQPGEQTA+L+ADGDSPQQK PQNGYHQVPDFAYSPNPHNG SGSD
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240

Query: 241 RNNSEPELKGKPMPRRDAPPKPAQPASTSSLTPQNKHKEQQKEANFDSQKLASARKRLQE 300
           RNNSEPE KGK +PRRDA PKP Q A TSSLTPQN+ KEQQKEANFDSQKLASARKRLQE
Sbjct: 241 RNNSEPEPKGKSVPRRDALPKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE 300

Query: 301 NYKEAENAKRQRTIQVMDIHDLPKPKNTFFSKNKGGGGGGGGSQGRHW 349
           NYKEAENAKRQRTIQVMDIH++PKPKN FFSKNK   G GGGSQGRHW
Sbjct: 301 NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNK---GSGGGSQGRHW 345

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BLAST of CmoCh07G008030 vs. TrEMBL
Match: A0A061DKK6_THECC (Transcription elongation factor (TFIIS) family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_001525 PE=4 SV=1)

HSP 1 Score: 450.7 bits (1158), Expect = 1.7e-123
Identity = 241/349 (69.05%), Postives = 279/349 (79.94%), Query Frame = 1 

Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRCRNC 63
           +DLDDFR++L+TA VDVWTFIDTA+ VAS+DYG +LK RRD IVERLY  TS  ++CRNC
Sbjct: 1   MDLDDFRSVLETAEVDVWTFIDTAILVASLDYGPELKQRRDRIVERLYA-TSMVTQCRNC 60

Query: 64  DTDRHPDGRSNGCEIKQSFA---EAKEGSPSTPQFVGVEGDDDRVDPYGGSFDDEQKKVL 123
           D    P       ++K+  +   + + GSP+ PQ    +  DD +DPYGG FDDEQKK+L
Sbjct: 61  DFGERPSDYEVKADLKRESSHEDKRRGGSPNAPQS---DNGDDELDPYGGLFDDEQKKIL 120

Query: 124 EIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 183
           EIKE LE PHQ ED+L+DLLQ+LADMDITFQALKETDIGRHVN LRKHSSNDVRRLVK L
Sbjct: 121 EIKEHLEEPHQSEDSLIDLLQSLADMDITFQALKETDIGRHVNILRKHSSNDVRRLVKQL 180

Query: 184 VRKWKDIVDEWVRLNQPGE-QTASLIADGDSPQQKLPQNGYHQVPDFAYSPNPHNGSSGS 243
           VRKWK+IVDEWVRLNQPGE ++++L+ADGDSPQ+K PQNGYHQVPDFAYSPNPHNGSSGS
Sbjct: 181 VRKWKEIVDEWVRLNQPGELESSALMADGDSPQRKPPQNGYHQVPDFAYSPNPHNGSSGS 240

Query: 244 DRNNSEPELKGKPMPRRDAPPKPAQPASTSSLTPQNKHKEQQKEANFDSQKLASARKRLQ 303
           D+NNSEPE K KP+P R+ PP    P  T S       + +QKE+NFDS++LASARKRLQ
Sbjct: 241 DKNNSEPERKPKPIPPRNEPP----PKPTYSAPVLQNRQREQKESNFDSERLASARKRLQ 300

Query: 304 ENYKEAENAKRQRTIQVMDIHDLPKPKNTFFSKNKGGGGGGGGSQGRHW 349
           ENYKEAENAKRQRTIQVMDIH+LPKPKN FF KNK     GG SQGRHW
Sbjct: 301 ENYKEAENAKRQRTIQVMDIHELPKPKNAFFGKNK-----GGSSQGRHW 336

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BLAST of CmoCh07G008030 vs. TrEMBL
Match: A0A067KK05_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09472 PE=4 SV=1)

HSP 1 Score: 446.0 bits (1146), Expect = 4.1e-122
Identity = 241/359 (67.13%), Postives = 292/359 (81.34%), Query Frame = 1 

Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRCRNC 63
           +D+DDFR+IL+++GVDVWTFI+TA+ VAS D+G++LK RRD IVE LY+  S   RCRNC
Sbjct: 1   MDIDDFRSILESSGVDVWTFIETAIMVASSDFGSELKRRRDKIVEMLYS--SSDGRCRNC 60

Query: 64  DTDRHPDGRSN-GCEIKQSFAEAK------EGSPST-PQFVG-----VEGDDDRVDPYGG 123
           D D    GR N G E+K+S  EAK       GSPST P+ +       E +DD +DPYGG
Sbjct: 61  DFDV---GRINDGHEMKESSHEAKVGGGGGSGSPSTTPRSIHGEEEEEEEEDDELDPYGG 120

Query: 124 SFDDEQKKVLEIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSS 183
             DDEQKK+LEIK+ +E P Q ED+L+DLLQ+LADMDITF+ALKETDIGRHVNRLRKHSS
Sbjct: 121 LLDDEQKKILEIKQSIEDPDQSEDSLIDLLQSLADMDITFRALKETDIGRHVNRLRKHSS 180

Query: 184 NDVRRLVKHLVRKWKDIVDEWVRLNQPGEQTAS-LIADGDSPQQKLPQNGYHQVPDFAYS 243
           NDVR+LVK LVRKWK+IVDEWVRLN  GE  +S L+ADGDSPQQK+PQNG+HQVPDFAYS
Sbjct: 181 NDVRKLVKQLVRKWKEIVDEWVRLNPQGEHASSALMADGDSPQQKIPQNGHHQVPDFAYS 240

Query: 244 PNPHNGSSGSDRNNSEPELKGKPMPRRDAPPKPAQPASTSSLTPQNKHKEQQKEANFDSQ 303
           PNPHNGSSGSD+NNSEPE K KP+PR++APP+P Q ++++S   Q + + +Q+++NFDS+
Sbjct: 241 PNPHNGSSGSDKNNSEPERKPKPVPRKEAPPRPIQQSASASHNAQLQRQREQQQSNFDSE 300

Query: 304 KLASARKRLQENYKEAENAKRQRTIQVMDIHDLPKPKNTFFSKNKGGGGGGGGSQGRHW 349
           +LASARKRLQENYKEA NAK+QRTIQVMDIH++PKPKNTFFSKNK     GG SQGRHW
Sbjct: 301 RLASARKRLQENYKEALNAKKQRTIQVMDIHEIPKPKNTFFSKNK-----GGASQGRHW 349

[Close]
BLAST of CmoCh07G008030 vs. TrEMBL
Match: A0A0D2V0M5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G017100 PE=4 SV=1)

HSP 1 Score: 444.1 bits (1141), Expect = 1.5e-121
Identity = 240/351 (68.38%), Postives = 284/351 (80.91%), Query Frame = 1 

Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRCRNC 63
           +DLDDFR++L+TAGVDVWTFIDTA+ VAS+DYG + K RRDGIVERLY  TS  +RC++C
Sbjct: 1   MDLDDFRSVLETAGVDVWTFIDTAILVASLDYGQEFKQRRDGIVERLYA-TSMVTRCKSC 60

Query: 64  DTDRHPDGRSNGCEIKQSFA--EAKEGSPSTPQFVGVEGDDDRVDPYGGSFDDEQKKVLE 123
           D       RSN  ++ +  +  E KEG   +P     + +DD +DPYGG FDDEQK+VLE
Sbjct: 61  DFGE----RSNVYQVNKEDSPHEGKEGGKGSPFTPHSDNEDDDMDPYGGLFDDEQKRVLE 120

Query: 124 IKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLV 183
           IKE+LE+P Q ED+LVDLLQ+LADMDITFQALKETDIGRHVN+LRKHSSNDVRRLVK LV
Sbjct: 121 IKERLELPDQSEDSLVDLLQSLADMDITFQALKETDIGRHVNKLRKHSSNDVRRLVKQLV 180

Query: 184 RKWKDIVDEWVRLNQPGE-QTASLIADGDSPQQKLPQNGYHQVPDFAYSPNPHNGSSGSD 243
           RKWK+IVDEWVR+NQPGE + A L+ADGDSPQQKLPQNG  QVPDFAYSPNPHNGS GS+
Sbjct: 181 RKWKEIVDEWVRVNQPGEPEPAGLMADGDSPQQKLPQNGRQQVPDFAYSPNPHNGSFGSE 240

Query: 244 RNNSEPELKGKPMP--RRDAPPKPAQPASTSSLTPQN-KHKEQQKEANFDSQKLASARKR 303
           +NNSEPE K KP+P  R+D P +      T S  PQN + + +QKE+NFDS++LASARKR
Sbjct: 241 KNNSEPERKPKPIPPCRKDPPSR-----HTHSTPPQNVQRQREQKESNFDSERLASARKR 300

Query: 304 LQENYKEAENAKRQRTIQVMDIHDLPKPKNTFFSKNKGGGGGGGGSQGRHW 349
           LQE+YKEAENAK+QRT+QVMDIH+LPKPKN FF+KNK     GGGSQGRHW
Sbjct: 301 LQESYKEAENAKKQRTVQVMDIHELPKPKNAFFAKNK-----GGGSQGRHW 336

[Close]
BLAST of CmoCh07G008030 vs. TrEMBL
Match: A0A061FYN3_THECC (Transcription elongation factor (TFIIS) family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_045322 PE=4 SV=1)

HSP 1 Score: 442.2 bits (1136), Expect = 5.9e-121
Identity = 243/355 (68.45%), Postives = 282/355 (79.44%), Query Frame = 1 

Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRCRNC 63
           +DLDDFR++L+TAGVDVWTFID+A+ VAS+DYG +LK RRDGIVERLY  TS  +RC++C
Sbjct: 1   MDLDDFRSVLETAGVDVWTFIDSAILVASLDYGQELKQRRDGIVERLYA-TSMVTRCKSC 60

Query: 64  DTDRHPDGRSNGCEIKQSFA--EAKEG-----SPSTPQFVGVEGDDDRVDPYGGSFDDEQ 123
           D       RSNG ++ +  +  E K G     SP TPQ    +GD   +DPYGG FDDEQ
Sbjct: 61  DFGE----RSNGYQVNKEGSPNEGKGGEGGRESPFTPQSDNEDGD---LDPYGGLFDDEQ 120

Query: 124 KKVLEIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRL 183
           K+VLEIKE LE P Q ED+LVDLLQ+LADMDITFQALKETDIGRHVN+LRKHSSNDVRRL
Sbjct: 121 KRVLEIKESLEEPDQSEDSLVDLLQSLADMDITFQALKETDIGRHVNKLRKHSSNDVRRL 180

Query: 184 VKHLVRKWKDIVDEWVRLNQPGEQTASLIADGDSPQQKLPQNGYHQVPDFAYSPNPHNGS 243
           VK LVRKWK+IVDEWVR+NQPGE  ++ + DGDSPQQKLPQNG  QVPDFAYSPNPHNGS
Sbjct: 181 VKQLVRKWKEIVDEWVRVNQPGELESAALMDGDSPQQKLPQNGRQQVPDFAYSPNPHNGS 240

Query: 244 SGSDRNNSEPELKGKPM--PRRDAPPKPAQPASTSSLTPQN-KHKEQQKEANFDSQKLAS 303
            G ++NNSEPE K KP+  PR+D PP+P     T S  PQN + + +QKE+NFDS++LAS
Sbjct: 241 FGLEKNNSEPERKPKPIPPPRKDPPPRP-----THSTPPQNVQRQREQKESNFDSERLAS 300

Query: 304 ARKRLQENYKEAENAKRQRTIQVMDIHDLPKPKNTFFSKNKGGGGGGGGSQGRHW 349
           ARKRLQ NYKEAENAK+QRTIQVMDIH+LPKPKN FF KNK     GGGSQGRHW
Sbjct: 301 ARKRLQANYKEAENAKKQRTIQVMDIHELPKPKNAFFGKNK-----GGGSQGRHW 337

[Close]
BLAST of CmoCh07G008030 vs. TAIR10
Match: AT5G09850.1 (AT5G09850.1 Transcription elongation factor (TFIIS) family protein)

HSP 1 Score: 339.0 bits (868), Expect = 3.5e-93
Identity = 203/367 (55.31%), Postives = 256/367 (69.75%), Query Frame = 1 

Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRCRNC 63
           +DLDDFR+++D AGVDVWTFIDTA+ VAS+DYG +LK RRD IVERLY  TS  ++CRNC
Sbjct: 1   MDLDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYA-TSMANKCRNC 60

Query: 64  D-------TDRHPDGRSNGCEIKQSFAEAKEGSPSTPQ------FVGVEGDDDRVDPYGG 123
           D       T+      +NG   +++  E +EG  +  +       V VE DDD  DP+ G
Sbjct: 61  DFGGGGNVTEAAIGRVNNGRVHEETEEEDEEGVTAAAEEEVREKSVNVEDDDD-FDPFAG 120

Query: 124 SFDDEQKKVLEIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSS 183
            FDDEQK ++EIKE+LE P   E++LV+LLQNL DMDITFQAL+ETDIGRHVNR+RKH S
Sbjct: 121 LFDDEQKSIVEIKEKLEDPDLSEESLVELLQNLEDMDITFQALQETDIGRHVNRVRKHPS 180

Query: 184 NDVRRLVKHLVRKWKDIVDEWVRLNQPGE-QTASLIADGDSPQQKLPQNG-YHQVPDFAY 243
           N+VRRL K LV+KWK+ VDEWV+ NQPG+ +  SLIAD DSP QK   NG   QVPDF Y
Sbjct: 181 NNVRRLAKQLVKKWKETVDEWVKFNQPGDLEPPSLIADEDSPVQKALHNGSRQQVPDFGY 240

Query: 244 SPNPHNGSSGSDRNN--SEPELKGKPM---PRRD--APPKPAQPASTSSLTPQNKHKEQQ 303
           SP P NG S S +N+  +EPE K +P+   PRR+  +P KP++P+ +    P++K   + 
Sbjct: 241 SPVPQNGYSSSSKNSNITEPERKPRPVAPQPRRESPSPAKPSRPSPSQQTIPRDK---EH 300

Query: 304 KEANFDSQKLASARKRLQENYKEAENAKRQRTIQVMDIHDLPKPKNTFFSKNKGGGGGGG 349
           KE +FD     +ARKRLQ+NY++AENAK+QRTIQVMDIHD+PKPK   F   KGG   G 
Sbjct: 301 KEVDFD-----TARKRLQQNYRQAENAKKQRTIQVMDIHDIPKPKKGGFFPRKGGSSQG- 353

[Close]
BLAST of CmoCh07G008030 vs. TAIR10
Match: AT3G10820.2 (AT3G10820.2 Transcription elongation factor (TFIIS) family protein)

HSP 1 Score: 85.5 bits (210), Expect = 7.1e-17
Identity = 63/206 (30.58%), Postives = 104/206 (50.49%), Query Frame = 1 

Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRCRNC 63
           + LD +R        D++  ID A+ VA+ D+  + K+R D I E L++     SRC  C
Sbjct: 8   VSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLFSCKV--SRCIGC 67

Query: 64  DTDRHPDGRSNGCEIKQSFAEAKEGSPSTPQFVGVEGDDDRVDPYGGSFDDEQK-----K 123
           D             ++ S A    G  +  + VGV G  DR D    + + E+      +
Sbjct: 68  D------------HLELSIA----GDEAAVEIVGVGGGGDRGDSGVATGEGEEASVSVDE 127

Query: 124 VLEIKEQLEIPHQPEDA-LVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLV 183
           V+ I++ L      +D+ L++ L+ L  M ++   LK+T+IG+ VN LR+HSS+ + +L 
Sbjct: 128 VMRIRDILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEIGKAVNGLRRHSSDKISKLA 187

Query: 184 KHLVRKWKDIVDEWVRLNQPGEQTAS 204
           K L  +WK +VD+W  +N P E   +
Sbjct: 188 KTLFAEWKRLVDQW--MNTPEEMAGT 193

[Close]
BLAST of CmoCh07G008030 vs. TAIR10
Match: AT5G05140.1 (AT5G05140.1 Transcription elongation factor (TFIIS) family protein)

HSP 1 Score: 75.9 bits (185), Expect = 5.6e-14
Identity = 101/387 (26.10%), Postives = 159/387 (41.09%), Query Frame = 1 

Query: 6   LDDFRTILDTAG-VDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRCRNCD 65
           LD +R      G  D++  ID A+ VA+ D  N+ K+RRD I E L++     +RC  CD
Sbjct: 7   LDSWREYFRRRGDSDIFGIIDHAIMVAATDCPNKFKSRRDKIAELLFSC--RVNRCVGCD 66

Query: 66  -----------TDRHPDGRSNG-------CEIKQSFAEAKEGSP--------STPQFVGV 125
                       +R   G   G        E+     E+K  S         S   F   
Sbjct: 67  HLELSVPGDDEANRGTTGNGGGGTAVDEDYEVAGGSKESKANSSRGDNNQIVSNYTFDEA 126

Query: 126 EGDDDRVDPYGGSFDDEQKKVLEIKE-QLEIPHQPEDALVDLLQNLADMDITFQALKETD 185
           E   D ++     F    K+V  IKE  L    +P   L+D L++L  M +    LK T+
Sbjct: 127 EALSDEIE----EFSVVSKEVARIKEILLNKEDEPNSVLLDSLRHLKLMSLNVDILKSTE 186

Query: 186 IGRHVNRLRKHSSNDVRRLVKHLVRKWKDIVDEWVRLNQ-------PGEQTASLIADGDS 245
           IG+ VN LRKHSS+ +R+L K L+ +WK++VD+WV   +         E     + D + 
Sbjct: 187 IGKAVNGLRKHSSDKIRQLAKTLIAEWKELVDQWVNTTKEITGAEGTPESANPSVLDEEE 246

Query: 246 PQQKLP---------QNGY---HQVPDFAYSPNP-----HNGSSGSDR---NNSEPELKG 305
               LP          NG+   H      +  NP     HN S   +R   N ++ + +G
Sbjct: 247 AFPSLPYDVDIFTPEPNGFEISHFFDSLDFDGNPRNSEEHNTSREHERRPQNIAKRKPEG 306

Query: 306 KPMPRRDAPPKPAQPASTSSLTPQNKHKEQQKEANFDSQKLA---SARKRLQENYKEAEN 335
             M  +DAP +  +P+S +      +  +Q  E    ++ ++   S +  +Q      E 
Sbjct: 307 TQMRIQDAPFRSIKPSSATDFDGTRRPVKQSTEQRMKNETVSVHKSEKPMIQRKPVVTEQ 366

[Close]
BLAST of CmoCh07G008030 vs. NCBI nr
Match: gi|659080819|ref|XP_008440997.1| (PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c [Cucumis melo])

HSP 1 Score: 611.3 bits (1575), Expect = 1.0e-171
Identity = 311/348 (89.37%), Postives = 321/348 (92.24%), Query Frame = 1 

Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVAS+DYGNQLKNRRDGIVERLY LTS PSRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60

Query: 61  RNCDTDRHPDGRSNGCEIKQSFAEAKEGSPSTPQFVGVEGDDDRVDPYGGSFDDEQKKVL 120
           RNCDTDR+ DGRSNGCEIKQ   E K  SPSTPQFV VEGDDD  DPY G FDDEQKKVL
Sbjct: 61  RNCDTDRNHDGRSNGCEIKQGSGEVKGASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPEDALV+LLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKDIVDEWVRLNQPGEQTASLIADGDSPQQKLPQNGYHQVPDFAYSPNPHNGSSGSD 240
           VRKWK+IVDEWVRLNQPGEQTA+L+ADGDSPQQK PQNGYHQVPDFAYSPNPHNG SGSD
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240

Query: 241 RNNSEPELKGKPMPRRDAPPKPAQPASTSSLTPQNKHKEQQKEANFDSQKLASARKRLQE 300
           RNNSEPE KGK +PRRDAPPKP Q A TSSLTPQN+ KEQQKEANFDSQKLASARKRLQE
Sbjct: 241 RNNSEPEPKGKSVPRRDAPPKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE 300

Query: 301 NYKEAENAKRQRTIQVMDIHDLPKPKNTFFSKNKGGGGGGGGSQGRHW 349
           NYKEAENAKRQRTIQVMDIH++PKPKN FFSKNK   G GGGSQGRHW
Sbjct: 301 NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNK---GSGGGSQGRHW 345

[Close]
BLAST of CmoCh07G008030 vs. NCBI nr
Match: gi|449448454|ref|XP_004141981.1| (PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c [Cucumis sativus])

HSP 1 Score: 605.1 bits (1559), Expect = 7.5e-170
Identity = 309/348 (88.79%), Postives = 319/348 (91.67%), Query Frame = 1 

Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVAS+DYGNQLKNRRDGIVERLY LTS PSRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60

Query: 61  RNCDTDRHPDGRSNGCEIKQSFAEAKEGSPSTPQFVGVEGDDDRVDPYGGSFDDEQKKVL 120
           RNCDTDR+ DGRSNGCEIKQ   E KE SPSTPQFV VEGDDD  DPY G FDDEQKKVL
Sbjct: 61  RNCDTDRNHDGRSNGCEIKQGSGEVKEASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIP QPEDALV+LLQNLADMDITFQALKETDIGRHVNRLRKH SNDVRRLVKHL
Sbjct: 121 EIKEQLEIPQQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKHL 180

Query: 181 VRKWKDIVDEWVRLNQPGEQTASLIADGDSPQQKLPQNGYHQVPDFAYSPNPHNGSSGSD 240
           VRKWK+IVDEWVRLNQPGEQTA+L+ADGDSPQQK PQNGYHQVPDFAYSPNPHNG SGSD
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240

Query: 241 RNNSEPELKGKPMPRRDAPPKPAQPASTSSLTPQNKHKEQQKEANFDSQKLASARKRLQE 300
           RNNSEPE KGK +PRRDA PKP Q A TSSLTPQN+ KEQQKEANFDSQKLASARKRLQE
Sbjct: 241 RNNSEPEPKGKSVPRRDALPKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE 300

Query: 301 NYKEAENAKRQRTIQVMDIHDLPKPKNTFFSKNKGGGGGGGGSQGRHW 349
           NYKEAENAKRQRTIQVMDIH++PKPKN FFSKNK   G GGGSQGRHW
Sbjct: 301 NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNK---GSGGGSQGRHW 345

[Close]
BLAST of CmoCh07G008030 vs. NCBI nr
Match: gi|1009146734|ref|XP_015891030.1| (PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c [Ziziphus jujuba])

HSP 1 Score: 462.6 bits (1189), Expect = 6.0e-127
Identity = 249/351 (70.94%), Postives = 284/351 (80.91%), Query Frame = 1 

Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRCRNC 63
           +D DDFRTILD+AGVDVWTFIDTA+ VAS+DYG +LK RRDGIVERLY  +S   R RNC
Sbjct: 1   MDYDDFRTILDSAGVDVWTFIDTAIAVASVDYGGELKQRRDGIVERLYAASSALPRLRNC 60

Query: 64  DT---DRHPDGRSNGCEIKQSFAEAKEGSPSTPQFVGVE--GDDDRVDPYGGSFDDEQKK 123
           D    +  P    +  E K S  E +  SP+TPQ V  +   DDD +DPYGG FDDEQKK
Sbjct: 61  DAAEQNNRPSIHYDHRESKTS-GEKERVSPATPQSVSRDDGNDDDELDPYGGLFDDEQKK 120

Query: 124 VLEIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVK 183
           +LEI+E LE P Q ED+LV+LLQ+LADMDITFQALKETDIGRHVN+LRKHSS +VR LVK
Sbjct: 121 ILEIREHLEEPDQSEDSLVELLQSLADMDITFQALKETDIGRHVNKLRKHSSGEVRGLVK 180

Query: 184 HLVRKWKDIVDEWVRLNQPGEQTASLIADGDSPQQKLPQNGYHQVPDFAYSPNPHNGSSG 243
            LVRKWK+ VDEWV+LNQPGEQT+S + DGDSPQQK  QNG+HQVPDFAYSPNPHNGSSG
Sbjct: 181 QLVRKWKETVDEWVKLNQPGEQTSSALMDGDSPQQKTFQNGHHQVPDFAYSPNPHNGSSG 240

Query: 244 SDRNNSEPELKGKPM-PRRDAPPKPAQPASTSSLTPQNKHKEQQKEANFDSQKLASARKR 303
           SD+NNSE E K K + PRR+APPKP+   ST    PQN+ +EQQKE+NFDSQ+LA+ARKR
Sbjct: 241 SDKNNSELERKPKALPPRREAPPKPSTIQSTPVSVPQNRQREQQKESNFDSQRLATARKR 300

Query: 304 LQENYKEAENAKRQRTIQVMDIHDLPKPKNTFFSKNKGGGGGGGGSQGRHW 349
           LQENYKEAENAKRQRTIQVMDIH++PKPKN FF KNK   GGGGGSQGRHW
Sbjct: 301 LQENYKEAENAKRQRTIQVMDIHEIPKPKNAFFVKNK---GGGGGSQGRHW 347

[Close]
BLAST of CmoCh07G008030 vs. NCBI nr
Match: gi|590708999|ref|XP_007048434.1| (Transcription elongation factor (TFIIS) family protein, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 450.7 bits (1158), Expect = 2.4e-123
Identity = 241/349 (69.05%), Postives = 279/349 (79.94%), Query Frame = 1 

Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRCRNC 63
           +DLDDFR++L+TA VDVWTFIDTA+ VAS+DYG +LK RRD IVERLY  TS  ++CRNC
Sbjct: 1   MDLDDFRSVLETAEVDVWTFIDTAILVASLDYGPELKQRRDRIVERLYA-TSMVTQCRNC 60

Query: 64  DTDRHPDGRSNGCEIKQSFA---EAKEGSPSTPQFVGVEGDDDRVDPYGGSFDDEQKKVL 123
           D    P       ++K+  +   + + GSP+ PQ    +  DD +DPYGG FDDEQKK+L
Sbjct: 61  DFGERPSDYEVKADLKRESSHEDKRRGGSPNAPQS---DNGDDELDPYGGLFDDEQKKIL 120

Query: 124 EIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 183
           EIKE LE PHQ ED+L+DLLQ+LADMDITFQALKETDIGRHVN LRKHSSNDVRRLVK L
Sbjct: 121 EIKEHLEEPHQSEDSLIDLLQSLADMDITFQALKETDIGRHVNILRKHSSNDVRRLVKQL 180

Query: 184 VRKWKDIVDEWVRLNQPGE-QTASLIADGDSPQQKLPQNGYHQVPDFAYSPNPHNGSSGS 243
           VRKWK+IVDEWVRLNQPGE ++++L+ADGDSPQ+K PQNGYHQVPDFAYSPNPHNGSSGS
Sbjct: 181 VRKWKEIVDEWVRLNQPGELESSALMADGDSPQRKPPQNGYHQVPDFAYSPNPHNGSSGS 240

Query: 244 DRNNSEPELKGKPMPRRDAPPKPAQPASTSSLTPQNKHKEQQKEANFDSQKLASARKRLQ 303
           D+NNSEPE K KP+P R+ PP    P  T S       + +QKE+NFDS++LASARKRLQ
Sbjct: 241 DKNNSEPERKPKPIPPRNEPP----PKPTYSAPVLQNRQREQKESNFDSERLASARKRLQ 300

Query: 304 ENYKEAENAKRQRTIQVMDIHDLPKPKNTFFSKNKGGGGGGGGSQGRHW 349
           ENYKEAENAKRQRTIQVMDIH+LPKPKN FF KNK     GG SQGRHW
Sbjct: 301 ENYKEAENAKRQRTIQVMDIHELPKPKNAFFGKNK-----GGSSQGRHW 336

[Close]
BLAST of CmoCh07G008030 vs. NCBI nr
Match: gi|802615747|ref|XP_012075304.1| (PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c isoform X1 [Jatropha curcas])

HSP 1 Score: 446.0 bits (1146), Expect = 5.8e-122
Identity = 241/359 (67.13%), Postives = 292/359 (81.34%), Query Frame = 1 

Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRCRNC 63
           +D+DDFR+IL+++GVDVWTFI+TA+ VAS D+G++LK RRD IVE LY+  S   RCRNC
Sbjct: 1   MDIDDFRSILESSGVDVWTFIETAIMVASSDFGSELKRRRDKIVEMLYS--SSDGRCRNC 60

Query: 64  DTDRHPDGRSN-GCEIKQSFAEAK------EGSPST-PQFVG-----VEGDDDRVDPYGG 123
           D D    GR N G E+K+S  EAK       GSPST P+ +       E +DD +DPYGG
Sbjct: 61  DFDV---GRINDGHEMKESSHEAKVGGGGGSGSPSTTPRSIHGEEEEEEEEDDELDPYGG 120

Query: 124 SFDDEQKKVLEIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSS 183
             DDEQKK+LEIK+ +E P Q ED+L+DLLQ+LADMDITF+ALKETDIGRHVNRLRKHSS
Sbjct: 121 LLDDEQKKILEIKQSIEDPDQSEDSLIDLLQSLADMDITFRALKETDIGRHVNRLRKHSS 180

Query: 184 NDVRRLVKHLVRKWKDIVDEWVRLNQPGEQTAS-LIADGDSPQQKLPQNGYHQVPDFAYS 243
           NDVR+LVK LVRKWK+IVDEWVRLN  GE  +S L+ADGDSPQQK+PQNG+HQVPDFAYS
Sbjct: 181 NDVRKLVKQLVRKWKEIVDEWVRLNPQGEHASSALMADGDSPQQKIPQNGHHQVPDFAYS 240

Query: 244 PNPHNGSSGSDRNNSEPELKGKPMPRRDAPPKPAQPASTSSLTPQNKHKEQQKEANFDSQ 303
           PNPHNGSSGSD+NNSEPE K KP+PR++APP+P Q ++++S   Q + + +Q+++NFDS+
Sbjct: 241 PNPHNGSSGSDKNNSEPERKPKPVPRKEAPPRPIQQSASASHNAQLQRQREQQQSNFDSE 300

Query: 304 KLASARKRLQENYKEAENAKRQRTIQVMDIHDLPKPKNTFFSKNKGGGGGGGGSQGRHW 349
           +LASARKRLQENYKEA NAK+QRTIQVMDIH++PKPKNTFFSKNK     GG SQGRHW
Sbjct: 301 RLASARKRLQENYKEALNAKKQRTIQVMDIHEIPKPKNTFFSKNK-----GGASQGRHW 349

The following BLAST results are available for this feature:
BLAST of CmoCh07G008030 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MD26C_ARATH6.3e-9255.31Probable mediator of RNA polymerase II transcription subunit 26c OS=Arabidopsis ... [more]
MD26A_ARATH1.3e-1530.58Probable mediator of RNA polymerase II transcription subunit 26a OS=Arabidopsis ... [more]
MD26B_ARATH9.9e-1326.10Probable mediator of RNA polymerase II transcription subunit 26b OS=Arabidopsis ... [more]
BLAST of CmoCh07G008030 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KHV9_CUCSA5.2e-17088.79Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486670 PE=4 SV=1[more]
A0A061DKK6_THECC1.7e-12369.05Transcription elongation factor (TFIIS) family protein, putative isoform 1 OS=Th... [more]
A0A067KK05_JATCU4.1e-12267.13Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09472 PE=4 SV=1[more]
A0A0D2V0M5_GOSRA1.5e-12168.38Uncharacterized protein OS=Gossypium raimondii GN=B456_012G017100 PE=4 SV=1[more]
A0A061FYN3_THECC5.9e-12168.45Transcription elongation factor (TFIIS) family protein, putative isoform 1 OS=Th... [more]
BLAST of CmoCh07G008030 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G09850.13.5e-9355.31 Transcription elongation factor (TFIIS) family protein[more]
AT3G10820.27.1e-1730.58 Transcription elongation factor (TFIIS) family protein[more]
AT5G05140.15.6e-1426.10 Transcription elongation factor (TFIIS) family protein[more]
BLAST of CmoCh07G008030 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659080819|ref|XP_008440997.1|1.0e-17189.37PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c [Cuc... [more]
gi|449448454|ref|XP_004141981.1|7.5e-17088.79PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c [Cuc... [more]
gi|1009146734|ref|XP_015891030.1|6.0e-12770.94PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c [Ziz... [more]
gi|590708999|ref|XP_007048434.1|2.4e-12369.05Transcription elongation factor (TFIIS) family protein, putative isoform 1 [Theo... [more]
gi|802615747|ref|XP_012075304.1|5.8e-12267.13PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c isof... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003617TFIIS/CRSP70_N_sub
IPR017923TFIIS_N
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0006414 translational elongation
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005840 ribosome
cellular_component GO:0005829 cytosol
molecular_function GO:0003677 DNA binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G008030.1CmoCh07G008030.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003617Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-typeSMARTSM00509TFS2_5coord: 119..190
score: 4.0
IPR017923Transcription factor IIS, N-terminalGENE3DG3DSA:1.20.930.10coord: 116..189
score: 1.1
IPR017923Transcription factor IIS, N-terminalPFAMPF08711Med26coord: 138..188
score: 8.6
IPR017923Transcription factor IIS, N-terminalPROFILEPS51319TFIIS_Ncoord: 114..191
score: 25
IPR017923Transcription factor IIS, N-terminalunknownSSF47676Conserved domain common to transcription factors TFIIS, elongin A, CRSP70coord: 117..199
score: 9.02
NoneNo IPR availableunknownCoilCoilcoord: 288..315
scor
NoneNo IPR availablePANTHERPTHR15141TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 3coord: 1..336
score: 1.2
NoneNo IPR availablePANTHERPTHR15141:SF14TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 3coord: 1..336
score: 1.2