Csa6G486670 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G486670
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionTranscription elongation factor, putative, expressed; contains IPR017923 (Transcription factor IIS, N-terminal)
LocationChr6 : 22529085 .. 22532034 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCTTCTTCTTCTTCTTCTTCTTCTACCTAATGTGAATTGACCCACTTCCAAAATTTTCCCTTTTAATTCTTTGAGGACGAAATTCCGGCTGTCTTCGTCTTCTCAAGGAATATTCCGTAGTTTTGATTTGGGTTCTTTTTAATTTATTGTTTCAGTTGCTTTTTGTGTTCTTAATTTTGTTTCCTGACTTGGGTTTCTGTAATTTTGACGGGTTGTCTTCTTCTACTTCTTCTTTTTCCTTCCGAACGGCAACTGAGAGTTTGGATTCTGAAAACGATCGGTTAAGCTTTTCTTTAGGATCGAATCAGATCTATTCTATGTCATTTGGGTTTCTTTTCTTTTTTGTTTCTTTCACAAAATTTCATTAATGGATTATGACGATTTTGCTTTTCCACCACTGGGGTTTCTGTGCAATTTCTAGCGTTTTTCCTTCTCTTTTGTTTATTGTCAGAGTTTGGAAGTAGAATAATAAACTTCCATCTTAGATCCGTTTCTGTTTCCTGAGTCCATTACTGAAAACAAGAACTACGAACGTTTTTTTCTTTTTCAGATTGTTTATCGGGAAGACAACCTTTCTCTTCTCTCAATCAATCTCCGATTCTTCTAATCGGACTCTTAAAAAAATGGTTCGGTTGGATTTAGATGATTTCCGAACTATATTAGATACAGCCGGCGTCGATGTTTGGACTTTCATCGATACAGCTATGGAGGTCGCTTCATTAGATTACGGTAACCAATTGAAGAATCGGAGAGATGGAATCGTTGAGAGGCTCTACGCGTTGACTTCGCCGCCATCTCGATGTCGGAACTGTGATACGGATCGCAACCATGACGGTCGCTCTAATGGCTGTGAAATCAAACAGGGGTCAGGTGAGGTTAAGGAAGCTTCCCCTTCAACGCCGCAGTTCGTTGTAGTGGAAGGGGATGACGATGGAGCAGACCCATATGCAGGATTGTTTGATGATGAACAGAAGAAGGTTCTGGAAATAAAGGAACAGCTCGAAATTCCTCAGCAGGTCTTCTTCTTTTGATACTGATTGTACAGAATTCTTTGATTGTTTTGAGGGATTTTTTCTCTTATCTTTACCAATTTGTTGTTTTTTGGCCTGTTTTAGCCTGAAGATGCTTTGGTTGAACTGCTTCAAAACTTAGCAGACATGGATATAACATTCCAAGCTCTTAAGGTAAGTGTTTATGGGGTGGTTTTTCTTGTTCTTTGTGTATGTAAATTCCTTTTCTTTTTCTTCTTCTCTGTTTCTTAATTCTTCTTGTTCTTGTTAGGAAACTGATATTGGAAGGCATGTGAATCGGTTGAGAAAGCATCCATCAAATGATGTTCGTAGATTGGTGAAACATCTTGTCAGGTACATAATTTTTTACATATTTGAAGGAATGGTTGATGCTTGTAATTTTCAGAAGAGGATAGTTGGTGAATTATCAGTTCAATTCAACTGTTTGTTAACGATATCAATTTGTTTTTCGACAGAAAATGGAAGGAGATTGTTGATGAATGGGTCAGGTTGAATCAGCCTGGGGAGCAAACAGCTACACTCTTAGGTAGAGACCAGTTTTGAACTTCGTCATTCAATTCCTTCGTAAGGTTAAATCTTAGTCACTCTGTTTGTAGAAAGATTTAGCTAAGAATGGTTTCTACTGTCAATGACAGCTGATGGCGACTCACCCCAGCAAAAAGCTCCTCAAAATGGCTATCATCAGGTGAACTGAAATCATTCATCGTATTCGGTTCTAATGTTCGTTAAGAAGTTTATCCTTTTCATAGTTTCTAATGTTTTATTGTTGTTGTTGTGTAGGTTCCTGATTTTGCATACTCTCCGAATCCACACAGTGAGTATTGAATTAGAGCTTATTGTTTCACTTGTCATCATGTACCACGGATTGATTTGGTTTCTCATGATCCCTCCCTTTTTCTTTGTTTTGGTAGATGGAGGTTCTGGGTCCGATAGAAATAACTCAGAACCGGAACCGAAGGGGAAATCCGTTCCAAGAAGAGATGCCCTTCCGAAACCAACACAACAAGCTCCAACGTCGTCTTTAACTCCTCAAAATGTATGGTAACCAAATTAGAGTCTTTTAACTCTATGTTTGGTTGCCAAAAATGGAGGAAGAAAATTGAAACTTACGATTCTTATGCTTCCGAAAACATAACAAACTTAACTCAAACTGGGATCAATTGTGTTGAAATTTGACAAAATTTGAGTGGTAGGTCTAAATTTTCTCAGGTCCCAGATGATATGCATGGTCTTACCTTACTTACAGTCAGCCAAATTTTGTCTTCAACAACTTAGCTGTTTTAGGAATGTTTTTCTTATTATGTCAATTGAATTGATGGCCATTTGCAGAGACAGAAAGAACAACAGAAAGAAGCAAATTTTGATTCCCAAAAGCTTGCATCGGCTAGAAAAAGGCTTCAAGAGAATTACAAGGAAGCTGAAAATGGTTTGGCCTACATCTAAGTTCTCTTTGATTTCATTTCTGGCTCTTTTTAGAACAAACAAAACATACTAATTTCTGTTTGTCTGTTTCTTTTTTTGAAGCTAAAAGGCAAAGAACAATTCAAGTCATGGACATCCATGAGATCCCAAAGCCAAAGAATGCCTTCTTCTCAAAGAACAAAGGCAGTGGTGGTGGTTCTCAAGGCAGACACTGGTGATAGATAATTTGGCAATGCAGTAAAAGCAAACAACATCTTCTAAATTAGGGTTATCCGTTATCGTCGAACGAATCGGTTTATCATCATCCTTTCTATTTGTTACATCTTTTGATCATTAAATTCTTAACTTCTCTATCAAGTTTAAAAAGAGAATCAAAAAACTACTTTTCGCGTAAATTTTCTCTTAATAAGCAATGCTAATACTGATATATTGTTAATCTACTGAGTCTTGAAACCTCACTGCCTGTTCTATATCATGTAAAACTCAAATAGGAAGG

mRNA sequence

ATGGTTCGGTTGGATTTAGATGATTTCCGAACTATATTAGATACAGCCGGCGTCGATGTTTGGACTTTCATCGATACAGCTATGGAGGTCGCTTCATTAGATTACGGTAACCAATTGAAGAATCGGAGAGATGGAATCGTTGAGAGGCTCTACGCGTTGACTTCGCCGCCATCTCGATGTCGGAACTGTGATACGGATCGCAACCATGACGGTCGCTCTAATGGCTGTGAAATCAAACAGGGGTCAGGTGAGGTTAAGGAAGCTTCCCCTTCAACGCCGCAGTTCGTTGTAGTGGAAGGGGATGACGATGGAGCAGACCCATATGCAGGATTGTTTGATGATGAACAGAAGAAGGTTCTGGAAATAAAGGAACAGCTCGAAATTCCTCAGCAGCCTGAAGATGCTTTGGTTGAACTGCTTCAAAACTTAGCAGACATGGATATAACATTCCAAGCTCTTAAGGAAACTGATATTGGAAGGCATGTGAATCGGTTGAGAAAGCATCCATCAAATGATGTTCGTAGATTGGTGAAACATCTTGTCAGAAAATGGAAGGAGATTGTTGATGAATGGGTCAGGTTGAATCAGCCTGGGGAGCAAACAGCTACACTCTTAGCTGATGGCGACTCACCCCAGCAAAAAGCTCCTCAAAATGGCTATCATCAGGTTCCTGATTTTGCATACTCTCCGAATCCACACAATGGAGGTTCTGGGTCCGATAGAAATAACTCAGAACCGGAACCGAAGGGGAAATCCGTTCCAAGAAGAGATGCCCTTCCGAAACCAACACAACAAGCTCCAACGTCGTCTTTAACTCCTCAAAATGTATGGTAA

Coding sequence (CDS)

ATGGTTCGGTTGGATTTAGATGATTTCCGAACTATATTAGATACAGCCGGCGTCGATGTTTGGACTTTCATCGATACAGCTATGGAGGTCGCTTCATTAGATTACGGTAACCAATTGAAGAATCGGAGAGATGGAATCGTTGAGAGGCTCTACGCGTTGACTTCGCCGCCATCTCGATGTCGGAACTGTGATACGGATCGCAACCATGACGGTCGCTCTAATGGCTGTGAAATCAAACAGGGGTCAGGTGAGGTTAAGGAAGCTTCCCCTTCAACGCCGCAGTTCGTTGTAGTGGAAGGGGATGACGATGGAGCAGACCCATATGCAGGATTGTTTGATGATGAACAGAAGAAGGTTCTGGAAATAAAGGAACAGCTCGAAATTCCTCAGCAGCCTGAAGATGCTTTGGTTGAACTGCTTCAAAACTTAGCAGACATGGATATAACATTCCAAGCTCTTAAGGAAACTGATATTGGAAGGCATGTGAATCGGTTGAGAAAGCATCCATCAAATGATGTTCGTAGATTGGTGAAACATCTTGTCAGAAAATGGAAGGAGATTGTTGATGAATGGGTCAGGTTGAATCAGCCTGGGGAGCAAACAGCTACACTCTTAGCTGATGGCGACTCACCCCAGCAAAAAGCTCCTCAAAATGGCTATCATCAGGTTCCTGATTTTGCATACTCTCCGAATCCACACAATGGAGGTTCTGGGTCCGATAGAAATAACTCAGAACCGGAACCGAAGGGGAAATCCGTTCCAAGAAGAGATGCCCTTCCGAAACCAACACAACAAGCTCCAACGTCGTCTTTAACTCCTCAAAATGTATGGTAA

Protein sequence

MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCDTDRNHDGRSNGCEIKQGSGEVKEASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVLEIKEQLEIPQQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSDRNNSEPEPKGKSVPRRDALPKPTQQAPTSSLTPQNVW*
Homology
[Close]
BLAST of Csa6G486670 vs. Swiss-Prot
Match: MD26C_ARATH (Probable mediator of RNA polymerase II transcription subunit 26c OS=Arabidopsis thaliana GN=MED26C PE=1 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 6.2e-100
Identity = 204/363 (56.20%), Postives = 251/363 (69.15%), Query Frame = 1 

Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNC 63
           +DLDDFR+++D AGVDVWTFIDTA+ VASLDYG +LK RRD IVERLYA TS  ++CRNC
Sbjct: 1   MDLDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYA-TSMANKCRNC 60

Query: 64  DTDRNHD------GRSNGCEIKQGSGEVKE------ASPSTPQFVVVEGDDDGADPYAGL 123
           D     +      GR N   + + + E  E      A     +  V   DDD  DP+AGL
Sbjct: 61  DFGGGGNVTEAAIGRVNNGRVHEETEEEDEEGVTAAAEEEVREKSVNVEDDDDFDPFAGL 120

Query: 124 FDDEQKKVLEIKEQLEIPQQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHPSN 183
           FDDEQK ++EIKE+LE P   E++LVELLQNL DMDITFQAL+ETDIGRHVNR+RKHPSN
Sbjct: 121 FDDEQKSIVEIKEKLEDPDLSEESLVELLQNLEDMDITFQALQETDIGRHVNRVRKHPSN 180

Query: 184 DVRRLVKHLVRKWKEIVDEWVRLNQPGE-QTATLLADGDSPQQKAPQNG-YHQVPDFAYS 243
           +VRRL K LV+KWKE VDEWV+ NQPG+ +  +L+AD DSP QKA  NG   QVPDF YS
Sbjct: 181 NVRRLAKQLVKKWKETVDEWVKFNQPGDLEPPSLIADEDSPVQKALHNGSRQQVPDFGYS 240

Query: 244 PNPHNGGSGSDRNN--SEPEPKGKSV---PRRD--ALPKPTQQAPTSSLTPQNRQKEQQK 303
           P P NG S S +N+  +EPE K + V   PRR+  +  KP++ +P+    P+++   + K
Sbjct: 241 PVPQNGYSSSSKNSNITEPERKPRPVAPQPRRESPSPAKPSRPSPSQQTIPRDK---EHK 300

Query: 304 EANFDSQKLASARKRLQENYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQG 346
           E +FD     +ARKRLQ+NY++AENAK+QRTIQVMDIH+IPKPK   F   KG G    G
Sbjct: 301 EVDFD-----TARKRLQQNYRQAENAKKQRTIQVMDIHDIPKPKKGGFFPRKG-GSSQGG 353

[Close]
BLAST of Csa6G486670 vs. Swiss-Prot
Match: MD26B_ARATH (Probable mediator of RNA polymerase II transcription subunit 26b OS=Arabidopsis thaliana GN=MED26B PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.6e-17
Identity = 99/362 (27.35%), Postives = 151/362 (41.71%), Query Frame = 1 

Query: 6   LDDFRTILDTAG-VDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCD 65
           LD +R      G  D++  ID A+ VA+ D  N+ K+RRD I E L++     +RC  CD
Sbjct: 7   LDSWREYFRRRGDSDIFGIIDHAIMVAATDCPNKFKSRRDKIAELLFSCRV--NRCVGCD 66

Query: 66  -----------TDRNHDGRSNG-------CEIKQGSGEVKEASPSTPQFVVVEG----DD 125
                       +R   G   G        E+  GS E K  S       +V      + 
Sbjct: 67  HLELSVPGDDEANRGTTGNGGGGTAVDEDYEVAGGSKESKANSSRGDNNQIVSNYTFDEA 126

Query: 126 DGADPYAGLFDDEQKKVLEIKE-QLEIPQQPEDALVELLQNLADMDITFQALKETDIGRH 185
           +        F    K+V  IKE  L    +P   L++ L++L  M +    LK T+IG+ 
Sbjct: 127 EALSDEIEEFSVVSKEVARIKEILLNKEDEPNSVLLDSLRHLKLMSLNVDILKSTEIGKA 186

Query: 186 VNRLRKHPSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQ--NG 245
           VN LRKH S+ +R+L K L+ +WKE+VD+WV  N   E T    A+G +P+   P   + 
Sbjct: 187 VNGLRKHSSDKIRQLAKTLIAEWKELVDQWV--NTTKEITG---AEG-TPESANPSVLDE 246

Query: 246 YHQVPDFAYSPNPHNGGSGSDRNNSEPEPKGKSVPR------RDALPKPTQQAPTS---S 305
               P   Y           D +   PEP G  +         D  P+ +++  TS    
Sbjct: 247 EEAFPSLPY-----------DVDIFTPEPNGFEISHFFDSLDFDGNPRNSEEHNTSREHE 306

Query: 306 LTPQNRQKEQQ-------KEANFDSQKLASARKRLQENYKEAENAKRQRTIQVMDIHEIP 326
             PQN  K +        ++A F S K +SA           ++ +++   + + +H+  
Sbjct: 307 RRPQNIAKRKPEGTQMRIQDAPFRSIKPSSATDFDGTRRPVKQSTEQRMKNETVSVHKSE 349


HSP 2 Score: 46.2 bits (108), Expect = 8.4e-04
Identity = 35/109 (32.11%), Postives = 57/109 (52.29%), Query Frame = 1 

Query: 241 RNNSEPEPKGKSVPRRDALPKPTQQAPTSSLTPQNRQK---EQQKEANFDSQ-KLASARK 300
           + ++E   K ++V    +     Q+ P   +T Q R+    +Q+K    D+  K   A++
Sbjct: 329 KQSTEQRMKNETVSVHKSEKPMIQRKPV--VTEQKRKAPGPQQEKLKGLDADAKFEFAKR 388

Query: 301 RLQENYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 346
           +LQE+Y+  ENAK+QRTIQV+++  IPK  +A   K +    G   R+W
Sbjct: 389 KLQESYQHHENAKKQRTIQVLEM--IPKQGSA--QKPQLKRPGMSNRNW 431

[Close]
BLAST of Csa6G486670 vs. Swiss-Prot
Match: MD26A_ARATH (Probable mediator of RNA polymerase II transcription subunit 26a OS=Arabidopsis thaliana GN=MED26A PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.8e-15
Identity = 76/279 (27.24%), Postives = 126/279 (45.16%), Query Frame = 1 

Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNC 63
           + LD +R        D++  ID A+ VA+ D+  + K+R D I E L++     SRC  C
Sbjct: 8   VSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLFSCKV--SRCIGC 67

Query: 64  D-TDRNHDGRSNGCEIKQ--GSGEVKEASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 123
           D  + +  G     EI    G G+  ++  +T      EG++      A +  DE  ++ 
Sbjct: 68  DHLELSIAGDEAAVEIVGVGGGGDRGDSGVATG-----EGEE------ASVSVDEVMRIR 127

Query: 124 EIKEQLEIPQQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKHL 183
           +I    +   + +  L+E L+ L  M ++   LK+T+IG+ VN LR+H S+ + +L K L
Sbjct: 128 DILSNKD--DEKDSVLLESLRKLESMSMSVDILKDTEIGKAVNGLRRHSSDKISKLAKTL 187

Query: 184 VRKWKEIVDEWVRLNQPGEQTAT-----LLADGDSPQQKAPQNGYHQVPDFAYSPNPHN- 243
             +WK +VD+W  +N P E   T      L      +++A  +  H +  +A  PN    
Sbjct: 188 FAEWKRLVDQW--MNTPEEMAGTEGTPESLNLSVIDEEEAFPSPPHDLDIYAPEPNGFEL 247

Query: 244 -------GGSGSDRNNSEPEPKGKSVPRRDALPKPTQQA 267
                     G+ R++ E + + KS       PK T  A
Sbjct: 248 SQILDCLDCDGNPRHSVESKHERKSQSSAGRRPKGTNDA 269


HSP 2 Score: 50.4 bits (119), Expect = 4.4e-05
Identity = 34/83 (40.96%), Postives = 50/83 (60.24%), Query Frame = 1 

Query: 247 EPKGKSVPRRDALPKPTQQAPTSSLTPQNR-----QKEQQKEANFDSQKLASARKRLQEN 306
           EPK ++   R+ +    Q+ PT+ +T Q R     Q+++ K  + DS K   A+++LQE+
Sbjct: 300 EPKRQTKQSREQMVSAIQRKPTA-VTEQKRKLAGPQQDKLKALDPDS-KFEFAKRKLQES 359

Query: 307 YKEAENAKRQRTIQVMDIHEIPK 325
           Y + ENAKRQRTIQV++   IPK
Sbjct: 360 YHQHENAKRQRTIQVLE--TIPK 378

[Close]
BLAST of Csa6G486670 vs. Swiss-Prot
Match: TEAN2_HUMAN (Transcription elongation factor A N-terminal and central domain-containing protein 2 OS=Homo sapiens GN=TCEANC2 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.9e-06
Identity = 30/95 (31.58%), Postives = 46/95 (48.42%), Query Frame = 1 

Query: 102 DDGADPYAGLFDDEQKKVLEI------KEQLEIPQQPEDALVELLQNLADMDITFQALKE 161
           D G   Y     +  K+V+ +      K  LE+P Q ++ LVE LQ L     + + LK 
Sbjct: 19  DSGGKVYKQATIESLKRVVVVEDIKRWKTMLELPDQTKENLVEALQELKKKIPSREVLKS 78

Query: 162 TDIGRHVNRLRKHPSNDVRRLVKHLVRKWKEIVDE 191
           T IG  VN++RKH  ++V  L + +  +WK   ++
Sbjct: 79  TRIGHTVNKMRKHSDSEVASLAREVYTEWKTFTEK 113

[Close]
BLAST of Csa6G486670 vs. TrEMBL
Match: A0A0A0KHV9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486670 PE=4 SV=1)

HSP 1 Score: 707.6 bits (1825), Expect = 7.5e-201
Identity = 345/345 (100.00%), Postives = 345/345 (100.00%), Query Frame = 1 

Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60

Query: 61  RNCDTDRNHDGRSNGCEIKQGSGEVKEASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 120
           RNCDTDRNHDGRSNGCEIKQGSGEVKEASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL
Sbjct: 61  RNCDTDRNHDGRSNGCEIKQGSGEVKEASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 120

Query: 121 EIKEQLEIPQQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKHL 180
           EIKEQLEIPQQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPQQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKHL 180

Query: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240
           VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240

Query: 241 RNNSEPEPKGKSVPRRDALPKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE 300
           RNNSEPEPKGKSVPRRDALPKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE
Sbjct: 241 RNNSEPEPKGKSVPRRDALPKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE 300

Query: 301 NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 346
           NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW
Sbjct: 301 NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 345

[Close]
BLAST of Csa6G486670 vs. TrEMBL
Match: A0A061DKK6_THECC (Transcription elongation factor (TFIIS) family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_001525 PE=4 SV=1)

HSP 1 Score: 469.9 bits (1208), Expect = 2.6e-129
Identity = 242/344 (70.35%), Postives = 274/344 (79.65%), Query Frame = 1 

Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNC 63
           +DLDDFR++L+TA VDVWTFIDTA+ VASLDYG +LK RRD IVERLYA TS  ++CRNC
Sbjct: 1   MDLDDFRSVLETAEVDVWTFIDTAILVASLDYGPELKQRRDRIVERLYA-TSMVTQCRNC 60

Query: 64  DTDRNHDGRSNGCEIKQGSGEVKEASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVLEIK 123
           D            ++K+ S    +    +P     +  DD  DPY GLFDDEQKK+LEIK
Sbjct: 61  DFGERPSDYEVKADLKRESSHEDKRRGGSPNAPQSDNGDDELDPYGGLFDDEQKKILEIK 120

Query: 124 EQLEIPQQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKHLVRK 183
           E LE P Q ED+L++LLQ+LADMDITFQALKETDIGRHVN LRKH SNDVRRLVK LVRK
Sbjct: 121 EHLEEPHQSEDSLIDLLQSLADMDITFQALKETDIGRHVNILRKHSSNDVRRLVKQLVRK 180

Query: 184 WKEIVDEWVRLNQPGE-QTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSDRN 243
           WKEIVDEWVRLNQPGE +++ L+ADGDSPQ+K PQNGYHQVPDFAYSPNPHNG SGSD+N
Sbjct: 181 WKEIVDEWVRLNQPGELESSALMADGDSPQRKPPQNGYHQVPDFAYSPNPHNGSSGSDKN 240

Query: 244 NSEPEPKGKSV-PRRDALPKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQEN 303
           NSEPE K K + PR +  PKPT  AP      QNRQ+E QKE+NFDS++LASARKRLQEN
Sbjct: 241 NSEPERKPKPIPPRNEPPPKPTYSAPVL----QNRQRE-QKESNFDSERLASARKRLQEN 300

Query: 304 YKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 346
           YKEAENAKRQRTIQVMDIHE+PKPKNAFF KNK  GG SQGRHW
Sbjct: 301 YKEAENAKRQRTIQVMDIHELPKPKNAFFGKNK--GGSSQGRHW 336

[Close]
BLAST of Csa6G486670 vs. TrEMBL
Match: A0A0D2SWX2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G216800 PE=4 SV=1)

HSP 1 Score: 466.8 bits (1200), Expect = 2.2e-128
Identity = 237/346 (68.50%), Postives = 278/346 (80.35%), Query Frame = 1 

Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNC 63
           +DLDDFR++L+TAGVDVWTFIDTA+ VASLDYG +LK RRDGIVERLYA TS  ++C++C
Sbjct: 1   MDLDDFRSVLETAGVDVWTFIDTAILVASLDYGQELKQRRDGIVERLYA-TSMVTKCKSC 60

Query: 64  DTDRNHDGR--SNGCEIKQGSGEVKEASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVLE 123
           D     +G   +N     +G  E    SP +PQ    + ++D  DPY GLFDDEQK+VLE
Sbjct: 61  DFGEGSNGYQLNNESNPHEGGEEGVTGSPFSPQS---DNENDDFDPYGGLFDDEQKRVLE 120

Query: 124 IKEQLEIPQQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKHLV 183
           IKE+LE+P Q ED LV+LLQ+LADMDITFQALKETDIGRHVN+LRKH SNDVRRLVKHLV
Sbjct: 121 IKERLELPDQSEDTLVDLLQSLADMDITFQALKETDIGRHVNKLRKHSSNDVRRLVKHLV 180

Query: 184 RKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSDR 243
           RKWK+IVDEWVR+NQPGE     L DGDSPQQK PQNG  QVPDFAYSPNPHNGGSGS++
Sbjct: 181 RKWKDIVDEWVRVNQPGEHEPAALMDGDSPQQKPPQNGRQQVPDFAYSPNPHNGGSGSEK 240

Query: 244 NNSEPEPKGKSV-PRRDALPKPTQQAPTSSLTPQNRQKE-QQKEANFDSQKLASARKRLQ 303
           NNSEPE K K + PR+D   +PT   P     PQN Q++ +QKE NFD+++LASARKRLQ
Sbjct: 241 NNSEPERKPKPIPPRKDPPSRPTHLTP-----PQNVQRQREQKETNFDAERLASARKRLQ 300

Query: 304 ENYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 346
           E+YKEAENAK+QRT+QVMDIHE+PKPKNAFF +NK  GGGSQGRHW
Sbjct: 301 ESYKEAENAKKQRTVQVMDIHELPKPKNAFFGRNK--GGGSQGRHW 335

[Close]
BLAST of Csa6G486670 vs. TrEMBL
Match: W9QGB8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_016512 PE=4 SV=1)

HSP 1 Score: 466.1 bits (1198), Expect = 3.8e-128
Identity = 243/349 (69.63%), Postives = 276/349 (79.08%), Query Frame = 1 

Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNC 63
           +D DDFR ILD++GVDVWTFIDTA+ VAS+DYG +L+ RRDGIVERLYA +S  S     
Sbjct: 1   MDYDDFRAILDSSGVDVWTFIDTAIAVASMDYGGELRQRRDGIVERLYAASSSSS----- 60

Query: 64  DTDRNHDGRSNGCEIKQGSGEVKEASPSTPQFVVVEGDD---DGADPYAGLFDDEQKKVL 123
               +H  R    E K  +GE +  SP TPQ +  E  D   +G DPY GLFDDEQKK+L
Sbjct: 61  -ASDHHRPRHYDREAKT-AGEKERVSPPTPQSIDRENSDNDGEGLDPYGGLFDDEQKKIL 120

Query: 124 EIKEQLEIPQQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKHL 183
           EIKEQLE   Q ED LVELLQ+LADMDITFQALKETDIGRHVNRLRKHPS++V+RLVK +
Sbjct: 121 EIKEQLEDSDQSEDTLVELLQSLADMDITFQALKETDIGRHVNRLRKHPSSEVKRLVKQV 180

Query: 184 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 243
           VRKWK+ VDEWV+LNQPGE  +  L DGDSPQQK PQNG+HQVPDFAYSPNPHNG SGSD
Sbjct: 181 VRKWKDTVDEWVKLNQPGEHASNSLMDGDSPQQKIPQNGHHQVPDFAYSPNPHNGSSGSD 240

Query: 244 RNNSEPEPKGKSVP-RRDALPKPTQQAPTSSL--TPQNRQKEQQKEANFDSQKLASARKR 303
           +NNSEPE K K+VP RR+ALPKP   +   S   TPQNRQ+E Q+E +FD++KLASARKR
Sbjct: 241 KNNSEPEQKPKAVPSRREALPKPMNPSVPQSAHSTPQNRQRE-QREGSFDAEKLASARKR 300

Query: 304 LQENYKEAENAKRQRTIQVMDIHEIPKP--KNAFFSKNKGSGGGSQGRH 345
           LQENYKEAENAK+QRTIQVMDIHEIPKP  KNAFF KNKG GGGS GRH
Sbjct: 301 LQENYKEAENAKKQRTIQVMDIHEIPKPKAKNAFFPKNKGGGGGSLGRH 341

[Close]
BLAST of Csa6G486670 vs. TrEMBL
Match: A0A061FYN3_THECC (Transcription elongation factor (TFIIS) family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_045322 PE=4 SV=1)

HSP 1 Score: 465.3 bits (1196), Expect = 6.4e-128
Identity = 244/352 (69.32%), Postives = 279/352 (79.26%), Query Frame = 1 

Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNC 63
           +DLDDFR++L+TAGVDVWTFID+A+ VASLDYG +LK RRDGIVERLYA TS  +RC++C
Sbjct: 1   MDLDDFRSVLETAGVDVWTFIDSAILVASLDYGQELKQRRDGIVERLYA-TSMVTRCKSC 60

Query: 64  DTDRNHDGRSNGCEI-KQGS------GEVKEASPSTPQFVVVEGDDDGADPYAGLFDDEQ 123
           D       RSNG ++ K+GS      GE    SP TPQ    + +D   DPY GLFDDEQ
Sbjct: 61  DFGE----RSNGYQVNKEGSPNEGKGGEGGRESPFTPQS---DNEDGDLDPYGGLFDDEQ 120

Query: 124 KKVLEIKEQLEIPQQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHPSNDVRRL 183
           K+VLEIKE LE P Q ED+LV+LLQ+LADMDITFQALKETDIGRHVN+LRKH SNDVRRL
Sbjct: 121 KRVLEIKESLEEPDQSEDSLVDLLQSLADMDITFQALKETDIGRHVNKLRKHSSNDVRRL 180

Query: 184 VKHLVRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGG 243
           VK LVRKWKEIVDEWVR+NQPGE  +  L DGDSPQQK PQNG  QVPDFAYSPNPHNG 
Sbjct: 181 VKQLVRKWKEIVDEWVRVNQPGELESAALMDGDSPQQKLPQNGRQQVPDFAYSPNPHNGS 240

Query: 244 SGSDRNNSEPEPKGKSV--PRRDALPKPTQQAPTSSLTPQNRQKE-QQKEANFDSQKLAS 303
            G ++NNSEPE K K +  PR+D  P+PT   P     PQN Q++ +QKE+NFDS++LAS
Sbjct: 241 FGLEKNNSEPERKPKPIPPPRKDPPPRPTHSTP-----PQNVQRQREQKESNFDSERLAS 300

Query: 304 ARKRLQENYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 346
           ARKRLQ NYKEAENAK+QRTIQVMDIHE+PKPKNAFF KNK  GGGSQGRHW
Sbjct: 301 ARKRLQANYKEAENAKKQRTIQVMDIHELPKPKNAFFGKNK--GGGSQGRHW 337

[Close]
BLAST of Csa6G486670 vs. TAIR10
Match: AT5G09850.1 (AT5G09850.1 Transcription elongation factor (TFIIS) family protein)

HSP 1 Score: 365.5 bits (937), Expect = 3.5e-101
Identity = 204/363 (56.20%), Postives = 251/363 (69.15%), Query Frame = 1 

Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNC 63
           +DLDDFR+++D AGVDVWTFIDTA+ VASLDYG +LK RRD IVERLYA TS  ++CRNC
Sbjct: 1   MDLDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYA-TSMANKCRNC 60

Query: 64  DTDRNHD------GRSNGCEIKQGSGEVKE------ASPSTPQFVVVEGDDDGADPYAGL 123
           D     +      GR N   + + + E  E      A     +  V   DDD  DP+AGL
Sbjct: 61  DFGGGGNVTEAAIGRVNNGRVHEETEEEDEEGVTAAAEEEVREKSVNVEDDDDFDPFAGL 120

Query: 124 FDDEQKKVLEIKEQLEIPQQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHPSN 183
           FDDEQK ++EIKE+LE P   E++LVELLQNL DMDITFQAL+ETDIGRHVNR+RKHPSN
Sbjct: 121 FDDEQKSIVEIKEKLEDPDLSEESLVELLQNLEDMDITFQALQETDIGRHVNRVRKHPSN 180

Query: 184 DVRRLVKHLVRKWKEIVDEWVRLNQPGE-QTATLLADGDSPQQKAPQNG-YHQVPDFAYS 243
           +VRRL K LV+KWKE VDEWV+ NQPG+ +  +L+AD DSP QKA  NG   QVPDF YS
Sbjct: 181 NVRRLAKQLVKKWKETVDEWVKFNQPGDLEPPSLIADEDSPVQKALHNGSRQQVPDFGYS 240

Query: 244 PNPHNGGSGSDRNN--SEPEPKGKSV---PRRD--ALPKPTQQAPTSSLTPQNRQKEQQK 303
           P P NG S S +N+  +EPE K + V   PRR+  +  KP++ +P+    P+++   + K
Sbjct: 241 PVPQNGYSSSSKNSNITEPERKPRPVAPQPRRESPSPAKPSRPSPSQQTIPRDK---EHK 300

Query: 304 EANFDSQKLASARKRLQENYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQG 346
           E +FD     +ARKRLQ+NY++AENAK+QRTIQVMDIH+IPKPK   F   KG G    G
Sbjct: 301 EVDFD-----TARKRLQQNYRQAENAKKQRTIQVMDIHDIPKPKKGGFFPRKG-GSSQGG 353

[Close]
BLAST of Csa6G486670 vs. TAIR10
Match: AT5G05140.1 (AT5G05140.1 Transcription elongation factor (TFIIS) family protein)

HSP 1 Score: 89.7 bits (221), Expect = 3.7e-18
Identity = 99/362 (27.35%), Postives = 151/362 (41.71%), Query Frame = 1 

Query: 6   LDDFRTILDTAG-VDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCD 65
           LD +R      G  D++  ID A+ VA+ D  N+ K+RRD I E L++     +RC  CD
Sbjct: 7   LDSWREYFRRRGDSDIFGIIDHAIMVAATDCPNKFKSRRDKIAELLFSCRV--NRCVGCD 66

Query: 66  -----------TDRNHDGRSNG-------CEIKQGSGEVKEASPSTPQFVVVEG----DD 125
                       +R   G   G        E+  GS E K  S       +V      + 
Sbjct: 67  HLELSVPGDDEANRGTTGNGGGGTAVDEDYEVAGGSKESKANSSRGDNNQIVSNYTFDEA 126

Query: 126 DGADPYAGLFDDEQKKVLEIKE-QLEIPQQPEDALVELLQNLADMDITFQALKETDIGRH 185
           +        F    K+V  IKE  L    +P   L++ L++L  M +    LK T+IG+ 
Sbjct: 127 EALSDEIEEFSVVSKEVARIKEILLNKEDEPNSVLLDSLRHLKLMSLNVDILKSTEIGKA 186

Query: 186 VNRLRKHPSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQ--NG 245
           VN LRKH S+ +R+L K L+ +WKE+VD+WV  N   E T    A+G +P+   P   + 
Sbjct: 187 VNGLRKHSSDKIRQLAKTLIAEWKELVDQWV--NTTKEITG---AEG-TPESANPSVLDE 246

Query: 246 YHQVPDFAYSPNPHNGGSGSDRNNSEPEPKGKSVPR------RDALPKPTQQAPTS---S 305
               P   Y           D +   PEP G  +         D  P+ +++  TS    
Sbjct: 247 EEAFPSLPY-----------DVDIFTPEPNGFEISHFFDSLDFDGNPRNSEEHNTSREHE 306

Query: 306 LTPQNRQKEQQ-------KEANFDSQKLASARKRLQENYKEAENAKRQRTIQVMDIHEIP 326
             PQN  K +        ++A F S K +SA           ++ +++   + + +H+  
Sbjct: 307 RRPQNIAKRKPEGTQMRIQDAPFRSIKPSSATDFDGTRRPVKQSTEQRMKNETVSVHKSE 349


HSP 2 Score: 46.2 bits (108), Expect = 4.7e-05
Identity = 35/109 (32.11%), Postives = 57/109 (52.29%), Query Frame = 1 

Query: 241 RNNSEPEPKGKSVPRRDALPKPTQQAPTSSLTPQNRQK---EQQKEANFDSQ-KLASARK 300
           + ++E   K ++V    +     Q+ P   +T Q R+    +Q+K    D+  K   A++
Sbjct: 329 KQSTEQRMKNETVSVHKSEKPMIQRKPV--VTEQKRKAPGPQQEKLKGLDADAKFEFAKR 388

Query: 301 RLQENYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 346
           +LQE+Y+  ENAK+QRTIQV+++  IPK  +A   K +    G   R+W
Sbjct: 389 KLQESYQHHENAKKQRTIQVLEM--IPKQGSA--QKPQLKRPGMSNRNW 431

[Close]
BLAST of Csa6G486670 vs. TAIR10
Match: AT3G10820.2 (AT3G10820.2 Transcription elongation factor (TFIIS) family protein)

HSP 1 Score: 84.3 bits (207), Expect = 1.6e-16
Identity = 76/279 (27.24%), Postives = 126/279 (45.16%), Query Frame = 1 

Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNC 63
           + LD +R        D++  ID A+ VA+ D+  + K+R D I E L++     SRC  C
Sbjct: 8   VSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLFSCKV--SRCIGC 67

Query: 64  D-TDRNHDGRSNGCEIKQ--GSGEVKEASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 123
           D  + +  G     EI    G G+  ++  +T      EG++      A +  DE  ++ 
Sbjct: 68  DHLELSIAGDEAAVEIVGVGGGGDRGDSGVATG-----EGEE------ASVSVDEVMRIR 127

Query: 124 EIKEQLEIPQQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKHL 183
           +I    +   + +  L+E L+ L  M ++   LK+T+IG+ VN LR+H S+ + +L K L
Sbjct: 128 DILSNKD--DEKDSVLLESLRKLESMSMSVDILKDTEIGKAVNGLRRHSSDKISKLAKTL 187

Query: 184 VRKWKEIVDEWVRLNQPGEQTAT-----LLADGDSPQQKAPQNGYHQVPDFAYSPNPHN- 243
             +WK +VD+W  +N P E   T      L      +++A  +  H +  +A  PN    
Sbjct: 188 FAEWKRLVDQW--MNTPEEMAGTEGTPESLNLSVIDEEEAFPSPPHDLDIYAPEPNGFEL 247

Query: 244 -------GGSGSDRNNSEPEPKGKSVPRRDALPKPTQQA 267
                     G+ R++ E + + KS       PK T  A
Sbjct: 248 SQILDCLDCDGNPRHSVESKHERKSQSSAGRRPKGTNDA 269


HSP 2 Score: 50.4 bits (119), Expect = 2.5e-06
Identity = 34/83 (40.96%), Postives = 50/83 (60.24%), Query Frame = 1 

Query: 247 EPKGKSVPRRDALPKPTQQAPTSSLTPQNR-----QKEQQKEANFDSQKLASARKRLQEN 306
           EPK ++   R+ +    Q+ PT+ +T Q R     Q+++ K  + DS K   A+++LQE+
Sbjct: 300 EPKRQTKQSREQMVSAIQRKPTA-VTEQKRKLAGPQQDKLKALDPDS-KFEFAKRKLQES 359

Query: 307 YKEAENAKRQRTIQVMDIHEIPK 325
           Y + ENAKRQRTIQV++   IPK
Sbjct: 360 YHQHENAKRQRTIQVLE--TIPK 378

[Close]
BLAST of Csa6G486670 vs. NCBI nr
Match: gi|449448454|ref|XP_004141981.1| (PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c [Cucumis sativus])

HSP 1 Score: 707.6 bits (1825), Expect = 1.1e-200
Identity = 345/345 (100.00%), Postives = 345/345 (100.00%), Query Frame = 1 

Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60

Query: 61  RNCDTDRNHDGRSNGCEIKQGSGEVKEASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 120
           RNCDTDRNHDGRSNGCEIKQGSGEVKEASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL
Sbjct: 61  RNCDTDRNHDGRSNGCEIKQGSGEVKEASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 120

Query: 121 EIKEQLEIPQQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKHL 180
           EIKEQLEIPQQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPQQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKHL 180

Query: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240
           VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240

Query: 241 RNNSEPEPKGKSVPRRDALPKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE 300
           RNNSEPEPKGKSVPRRDALPKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE
Sbjct: 241 RNNSEPEPKGKSVPRRDALPKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE 300

Query: 301 NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 346
           NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW
Sbjct: 301 NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 345

[Close]
BLAST of Csa6G486670 vs. NCBI nr
Match: gi|659080819|ref|XP_008440997.1| (PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c [Cucumis melo])

HSP 1 Score: 697.2 bits (1798), Expect = 1.4e-197
Identity = 341/345 (98.84%), Postives = 341/345 (98.84%), Query Frame = 1 

Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60

Query: 61  RNCDTDRNHDGRSNGCEIKQGSGEVKEASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 120
           RNCDTDRNHDGRSNGCEIKQGSGEVK ASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL
Sbjct: 61  RNCDTDRNHDGRSNGCEIKQGSGEVKGASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 120

Query: 121 EIKEQLEIPQQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKHL 180
           EIKEQLEIP QPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKH SNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240
           VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240

Query: 241 RNNSEPEPKGKSVPRRDALPKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE 300
           RNNSEPEPKGKSVPRRDA PKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE
Sbjct: 241 RNNSEPEPKGKSVPRRDAPPKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE 300

Query: 301 NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 346
           NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW
Sbjct: 301 NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 345

[Close]
BLAST of Csa6G486670 vs. NCBI nr
Match: gi|1009146734|ref|XP_015891030.1| (PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c [Ziziphus jujuba])

HSP 1 Score: 496.1 bits (1276), Expect = 4.9e-137
Identity = 251/347 (72.33%), Postives = 284/347 (81.84%), Query Frame = 1 

Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNC 63
           +D DDFRTILD+AGVDVWTFIDTA+ VAS+DYG +LK RRDGIVERLYA +S   R RNC
Sbjct: 1   MDYDDFRTILDSAGVDVWTFIDTAIAVASVDYGGELKQRRDGIVERLYAASSALPRLRNC 60

Query: 64  DTDRNHDGRSNGCEIKQG--SGEVKEASPSTPQFVVVE--GDDDGADPYAGLFDDEQKKV 123
           D    ++  S   + ++   SGE +  SP+TPQ V  +   DDD  DPY GLFDDEQKK+
Sbjct: 61  DAAEQNNRPSIHYDHRESKTSGEKERVSPATPQSVSRDDGNDDDELDPYGGLFDDEQKKI 120

Query: 124 LEIKEQLEIPQQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKH 183
           LEI+E LE P Q ED+LVELLQ+LADMDITFQALKETDIGRHVN+LRKH S +VR LVK 
Sbjct: 121 LEIREHLEEPDQSEDSLVELLQSLADMDITFQALKETDIGRHVNKLRKHSSGEVRGLVKQ 180

Query: 184 LVRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGS 243
           LVRKWKE VDEWV+LNQPGEQT++ L DGDSPQQK  QNG+HQVPDFAYSPNPHNG SGS
Sbjct: 181 LVRKWKETVDEWVKLNQPGEQTSSALMDGDSPQQKTFQNGHHQVPDFAYSPNPHNGSSGS 240

Query: 244 DRNNSEPEPKGKSV-PRRDALPKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRL 303
           D+NNSE E K K++ PRR+A PKP+    T    PQNRQ+EQQKE+NFDSQ+LA+ARKRL
Sbjct: 241 DKNNSELERKPKALPPRREAPPKPSTIQSTPVSVPQNRQREQQKESNFDSQRLATARKRL 300

Query: 304 QENYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 346
           QENYKEAENAKRQRTIQVMDIHEIPKPKNAFF KNKG GGGSQGRHW
Sbjct: 301 QENYKEAENAKRQRTIQVMDIHEIPKPKNAFFVKNKGGGGGSQGRHW 347

[Close]
BLAST of Csa6G486670 vs. NCBI nr
Match: gi|1012257508|ref|XP_015945225.1| (PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c [Arachis duranensis])

HSP 1 Score: 483.8 bits (1244), Expect = 2.5e-133
Identity = 255/376 (67.82%), Postives = 289/376 (76.86%), Query Frame = 1 

Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNC 63
           +DLDDFR+ILDTAGVDVW FIDTA+ VASLD G++L+ RRDGI+ER++A T+PP  CRNC
Sbjct: 1   MDLDDFRSILDTAGVDVWLFIDTAITVASLDCGDELRRRRDGIIERIFAATTPPLPCRNC 60

Query: 64  DTDRNHDGRSNGCEIKQ--------------------GSGEVKEASPSTPQFV------- 123
           D DRN   RSNG +IK+                    G G     SPSTPQ +       
Sbjct: 61  DGDRNL--RSNGYQIKKRLSPSPSPQRQHSHHQQRRGGRGAAAAVSPSTPQSLGDDDDNG 120

Query: 124 ---VVEGDDDGADPYAGLFDDEQKKVLEIKEQLEIPQQPEDALVELLQNLADMDITFQAL 183
                E D +  DPY GLFDDEQKK+LEIKEQLE P Q E++LVELLQNLADMDITFQAL
Sbjct: 121 HADAAEDDREDLDPYGGLFDDEQKKILEIKEQLEEPDQSEESLVELLQNLADMDITFQAL 180

Query: 184 KETDIGRHVNRLRKHPSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQ 243
           KETDIGRHVNRLRKH SNDVRRLVK LVRKWKEIVDEWVRLNQPG  TA+L+ADGDSP  
Sbjct: 181 KETDIGRHVNRLRKHSSNDVRRLVKLLVRKWKEIVDEWVRLNQPG-GTASLMADGDSPPL 240

Query: 244 KAPQNGYHQVPDFAYSPNPHNGGSGSDRNNSEPEPKGKSVPRRDALPKPT--QQAPTSSL 303
           K  QNG+HQ+PDFAYSPNPHNG SGSDRN SE EPK K +PR++A PKPT     PT S+
Sbjct: 241 KTTQNGHHQIPDFAYSPNPHNGSSGSDRNTSEAEPKPKVIPRKEAPPKPTPPPSVPTPSI 300

Query: 304 TPQNRQKEQQKEANFDSQKLASARKRLQENYKEAENAKRQRTIQVMDIHEIP--KPKNAF 346
             QNRQ+E Q++ +FD+++LASARKRLQENYKEAENAK+QRTIQVMDIHE+P  KPKNAF
Sbjct: 301 AFQNRQRE-QRDRDFDAERLASARKRLQENYKEAENAKKQRTIQVMDIHELPKSKPKNAF 360

[Close]
BLAST of Csa6G486670 vs. NCBI nr
Match: gi|1021581102|ref|XP_016179913.1| (PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c [Arachis ipaensis])

HSP 1 Score: 480.7 bits (1236), Expect = 2.1e-132
Identity = 254/378 (67.20%), Postives = 288/378 (76.19%), Query Frame = 1 

Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNC 63
           +DLDDFR+ILDTAGVDVW FIDTA+ VASLD G++L+ RRDGI+ER++A T+PP  CRNC
Sbjct: 1   MDLDDFRSILDTAGVDVWLFIDTAITVASLDCGDELRRRRDGIIERIFAATTPPLPCRNC 60

Query: 64  DTDRNHDGRSNGCEIKQ--------------------GSGEVKEASPSTPQFV------- 123
           D DRN   RSNG +IK+                    G G     SPSTPQ +       
Sbjct: 61  DGDRNL--RSNGHQIKKRLSPSPSPQRQHSHHQQRRGGRGAAAAVSPSTPQSLGDDDDNG 120

Query: 124 -----VVEGDDDGADPYAGLFDDEQKKVLEIKEQLEIPQQPEDALVELLQNLADMDITFQ 183
                  E D +  DPY GLFDDEQKK+LEIKEQLE P Q E++LVELLQNLADMDITFQ
Sbjct: 121 HADADAAEDDREDLDPYGGLFDDEQKKILEIKEQLEEPDQSEESLVELLQNLADMDITFQ 180

Query: 184 ALKETDIGRHVNRLRKHPSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQTATLLADGDSP 243
           ALKETDIGRHVNRLRKH SNDVRRLVK LVRKWKEIVDEWVRLNQPG   A+L+ADGDSP
Sbjct: 181 ALKETDIGRHVNRLRKHSSNDVRRLVKLLVRKWKEIVDEWVRLNQPG-GAASLMADGDSP 240

Query: 244 QQKAPQNGYHQVPDFAYSPNPHNGGSGSDRNNSEPEPKGKSVPRRDALPKPT--QQAPTS 303
             K  QNG+HQ+PDFAYSPNPHNG SGSDRN SE EPK K +PR++A PKPT     PT 
Sbjct: 241 PLKTTQNGHHQIPDFAYSPNPHNGSSGSDRNTSEAEPKPKVIPRKEAPPKPTPPPSVPTP 300

Query: 304 SLTPQNRQKEQQKEANFDSQKLASARKRLQENYKEAENAKRQRTIQVMDIHEIP--KPKN 346
           S+  QNRQ+E Q++ +FD+++LASARKRLQENYKEAENAK+QRTIQVMDIHE+P  KPKN
Sbjct: 301 SIAFQNRQRE-QRDRDFDAERLASARKRLQENYKEAENAKKQRTIQVMDIHELPKSKPKN 360

The following BLAST results are available for this feature:
BLAST of Csa6G486670 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MD26C_ARATH6.2e-10056.20Probable mediator of RNA polymerase II transcription subunit 26c OS=Arabidopsis ... [more]
MD26B_ARATH6.6e-1727.35Probable mediator of RNA polymerase II transcription subunit 26b OS=Arabidopsis ... [more]
MD26A_ARATH2.8e-1527.24Probable mediator of RNA polymerase II transcription subunit 26a OS=Arabidopsis ... [more]
TEAN2_HUMAN6.9e-0631.58Transcription elongation factor A N-terminal and central domain-containing prote... [more]
BLAST of Csa6G486670 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KHV9_CUCSA7.5e-201100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486670 PE=4 SV=1[more]
A0A061DKK6_THECC2.6e-12970.35Transcription elongation factor (TFIIS) family protein, putative isoform 1 OS=Th... [more]
A0A0D2SWX2_GOSRA2.2e-12868.50Uncharacterized protein OS=Gossypium raimondii GN=B456_010G216800 PE=4 SV=1[more]
W9QGB8_9ROSA3.8e-12869.63Uncharacterized protein OS=Morus notabilis GN=L484_016512 PE=4 SV=1[more]
A0A061FYN3_THECC6.4e-12869.32Transcription elongation factor (TFIIS) family protein, putative isoform 1 OS=Th... [more]
BLAST of Csa6G486670 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G09850.13.5e-10156.20 Transcription elongation factor (TFIIS) family protein[more]
AT5G05140.13.7e-1827.35 Transcription elongation factor (TFIIS) family protein[more]
AT3G10820.21.6e-1627.24 Transcription elongation factor (TFIIS) family protein[more]
BLAST of Csa6G486670 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449448454|ref|XP_004141981.1|1.1e-200100.00PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c [Cuc... [more]
gi|659080819|ref|XP_008440997.1|1.4e-19798.84PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c [Cuc... [more]
gi|1009146734|ref|XP_015891030.1|4.9e-13772.33PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c [Ziz... [more]
gi|1012257508|ref|XP_015945225.1|2.5e-13367.82PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c [Ara... [more]
gi|1021581102|ref|XP_016179913.1|2.1e-13267.20PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c [Ara... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003617TFIIS/CRSP70_N_sub
IPR017923TFIIS_N
IPR003617TFIIS/CRSP70_N_sub
IPR017923TFIIS_N
IPR003617TFIIS/CRSP70_N_sub
IPR017923TFIIS_N
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
GO:0006351transcription, DNA-templated
GO:0006351transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005634nucleus
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003677DNA binding
GO:0003677DNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0006414 translational elongation
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005840 ribosome
cellular_component GO:0005829 cytosol
molecular_function GO:0003677 DNA binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU090965cucumber EST collection version 3.0transcribed_cluster
CU093681cucumber EST collection version 3.0transcribed_cluster
CU094826cucumber EST collection version 3.0transcribed_cluster
CU129666cucumber EST collection version 3.0transcribed_cluster
CU172145cucumber EST collection version 3.0transcribed_cluster
CU177450cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G486670.3Csa6G486670.3mRNA
Csa6G486670.2Csa6G486670.2mRNA
Csa6G486670.1Csa6G486670.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU094826CU094826transcribed_cluster
CU090965CU090965transcribed_cluster
CU129666CU129666transcribed_cluster
CU093681CU093681transcribed_cluster
CU177450CU177450transcribed_cluster
CU172145CU172145transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003617Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-typeSMARTSM00509TFS2_5coord: 119..190
score: 3.3
IPR017923Transcription factor IIS, N-terminalGENE3DG3DSA:1.20.930.10coord: 116..189
score: 6.7
IPR017923Transcription factor IIS, N-terminalPFAMPF08711Med26coord: 138..188
score: 3.3
IPR017923Transcription factor IIS, N-terminalPROFILEPS51319TFIIS_Ncoord: 114..191
score: 25
IPR017923Transcription factor IIS, N-terminalunknownSSF47676Conserved domain common to transcription factors TFIIS, elongin A, CRSP70coord: 117..198
score: 1.14
NoneNo IPR availablePANTHERPTHR15141TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 3coord: 1..270
score: 4.9
NoneNo IPR availablePANTHERPTHR15141:SF14TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 3coord: 1..270
score: 4.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G486670Cla008463Watermelon (97103) v1cuwmB502
Csa6G486670MELO3C008024Melon (DHL92) v3.5.1cumeB508
Csa6G486670ClCG01G015720Watermelon (Charleston Gray)cuwcgB432
Csa6G486670Lsi01G011230Bottle gourd (USVL1VR-Ls)culsiB434
Csa6G486670MELO3C008024.2Melon (DHL92) v3.6.1cumedB487
Csa6G486670Cla97C01G014660Watermelon (97103) v2cuwmbB412
Csa6G486670Bhi03G001077Wax gourdcuwgoB622
Csa6G486670CSPI06G26860Wild cucumber (PI 183967)cpicuB313
Csa6G486670Cucsa.101280Cucumber (Gy14) v1cgycuB121
Csa6G486670CmaCh07G007790Cucurbita maxima (Rimu)cmacuB877
Csa6G486670CmaCh03G010700Cucurbita maxima (Rimu)cmacuB681
Csa6G486670CmoCh03G010650Cucurbita moschata (Rifu)cmocuB670
Csa6G486670CmoCh07G008030Cucurbita moschata (Rifu)cmocuB865
Csa6G486670Cp4.1LG19g11990Cucurbita pepo (Zucchini)cpecuB503
Csa6G486670Cp4.1LG10g03250Cucurbita pepo (Zucchini)cpecuB085
Csa6G486670CsGy6G026250Cucumber (Gy14) v2cgybcuB281
Csa6G486670Carg10557Silver-seed gourdcarcuB0267
Csa6G486670Carg05289Silver-seed gourdcarcuB0826
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G486670Cucumber (Gy14) v1cgycuB359
Csa6G486670Cucurbita maxima (Rimu)cmacuB627
Csa6G486670Cucurbita moschata (Rifu)cmocuB619
Csa6G486670Watermelon (Charleston Gray)cuwcgB447
Csa6G486670Watermelon (97103) v1cuwmB531
Csa6G486670Cucurbita pepo (Zucchini)cpecuB764
Csa6G486670Cucumber (Gy14) v2cgybcuB084
Csa6G486670Watermelon (97103) v2cuwmbB437
Csa6G486670Wax gourdcuwgoB615
Csa6G486670Cucumber (Chinese Long) v2cucuB074