Carg19116 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19116
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Late embryogenesis abundant protein
Location	Cucurbita_argyrosperma_scaffold_112 : 252709 .. 253416 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAATCCCCGACAAAACCCACATATATTATGCACTCCAACAACCACCAAACCAGCCACCGCCCTCCACCCTATCGCCGCAACGTCCCCAGATACCATACCAAAGCCGGCGGCGGCGGTGGCAGCCATTGTTGTTTAAAATGCATCTGTATCTGTTACATTTTCCTCTGTTTCTTCATCTTTGTTCTACTTAGCCTCGCCTATTTCATCGTCACGTTTTACAGACCCAAAATCCCTTCTTACAAAGTCGCCGATTTCAACGTCCACGTCTTCAATGTCAAACAGGATTTCAGCCTTTACACAGAATTCATCGTGATCGTTGAATCCAATAATCCAAATGAAAACATTGACTTCATCTACGGCAGAGGAAGCTCTGTTTCTGTTCTTTACAATGATTCAATGCTCTGCGCCGGAAAGATTCCTAATTTCCGGCAACCGCCGAGGAATGTGACGGATATAAGCATTTTGCTAAGTGGGGTTAGCGAGTTTGGGTCGGGGCTGCAAGAGGCGCTGATGCAGAACAGACATAGTGGGCAGATTCCTCTGCTCGTGGCGGTGAAAGTTCCGGTGACGGTGGTGATCGGAGGGTTGGCGCTGAGGAAGATCAATGTTCTTGTGAATTGTTCGTTGGTGGTTGATAATTTGTCCCCAAACAAGACAGTTGGGATTTTGTCGAGTAATTATACTTACGGTGCTACCTTGTGA

mRNA sequence

ATGGAAGAATCCCCGACAAAACCCACATATATTATGCACTCCAACAACCACCAAACCAGCCACCGCCCTCCACCCTATCGCCGCAACGTCCCCAGATACCATACCAAAGCCGGCGGCGGCGGTGGCAGCCATTGTTGTTTAAAATGCATCTGTATCTGTTACATTTTCCTCTGTTTCTTCATCTTTGTTCTACTTAGCCTCGCCTATTTCATCGTCACGTTTTACAGACCCAAAATCCCTTCTTACAAAGTCGCCGATTTCAACGTCCACGTCTTCAATGTCAAACAGGATTTCAGCCTTTACACAGAATTCATCGTGATCGTTGAATCCAATAATCCAAATGAAAACATTGACTTCATCTACGGCAGAGGAAGCTCTGTTTCTGTTCTTTACAATGATTCAATGCTCTGCGCCGGAAAGATTCCTAATTTCCGGCAACCGCCGAGGAATGTGACGGATATAAGCATTTTGCTAAGTGGGGTTAGCGAGTTTGGGTCGGGGCTGCAAGAGGCGCTGATGCAGAACAGACATAGTGGGCAGATTCCTCTGCTCGTGGCGGTGAAAGTTCCGGTGACGGTGGTGATCGGAGGGTTGGCGCTGAGGAAGATCAATGTTCTTGTGAATTGTTCGTTGGTGGTTGATAATTTGTCCCCAAACAAGACAGTTGGGATTTTGTCGAGTAATTATACTTACGGTGCTACCTTGTGA

Coding sequence (CDS)

ATGGAAGAATCCCCGACAAAACCCACATATATTATGCACTCCAACAACCACCAAACCAGCCACCGCCCTCCACCCTATCGCCGCAACGTCCCCAGATACCATACCAAAGCCGGCGGCGGCGGTGGCAGCCATTGTTGTTTAAAATGCATCTGTATCTGTTACATTTTCCTCTGTTTCTTCATCTTTGTTCTACTTAGCCTCGCCTATTTCATCGTCACGTTTTACAGACCCAAAATCCCTTCTTACAAAGTCGCCGATTTCAACGTCCACGTCTTCAATGTCAAACAGGATTTCAGCCTTTACACAGAATTCATCGTGATCGTTGAATCCAATAATCCAAATGAAAACATTGACTTCATCTACGGCAGAGGAAGCTCTGTTTCTGTTCTTTACAATGATTCAATGCTCTGCGCCGGAAAGATTCCTAATTTCCGGCAACCGCCGAGGAATGTGACGGATATAAGCATTTTGCTAAGTGGGGTTAGCGAGTTTGGGTCGGGGCTGCAAGAGGCGCTGATGCAGAACAGACATAGTGGGCAGATTCCTCTGCTCGTGGCGGTGAAAGTTCCGGTGACGGTGGTGATCGGAGGGTTGGCGCTGAGGAAGATCAATGTTCTTGTGAATTGTTCGTTGGTGGTTGATAATTTGTCCCCAAACAAGACAGTTGGGATTTTGTCGAGTAATTATACTTACGGTGCTACCTTGTGA

Protein sequence

MEESPTKPTYIMHSNNHQTSHRPPPYRRNVPRYHTKAGGGGGSHCCLKCICICYIFLCFFIFVLLSLAYFIVTFYRPKIPSYKVADFNVHVFNVKQDFSLYTEFIVIVESNNPNENIDFIYGRGSSVSVLYNDSMLCAGKIPNFRQPPRNVTDISILLSGVSEFGSGLQEALMQNRHSGQIPLLVAVKVPVTVVIGGLALRKINVLVNCSLVVDNLSPNKTVGILSSNYTYGATL

Homology

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BLAST of Carg19116 vs. NCBI nr
Match: XP_022930831.1 (NDR1/HIN1-like protein 6 [Cucurbita moschata])

HSP 1 Score: 404.1 bits (1037), Expect = 3.3e-109
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0


Query: 1   MEESPTKPTYIMHSNNHQTSHRPPPYRRNVPRYHTXXXXXXXXXXXXKCIXXXXXXXXXX 60
           MEESPTKPTYIMHSNNHQTSHRPPPYRRNVPRYHTXXXXXXXXXXXXKCIXXXXXXXXXX
Sbjct: 1   MEESPTKPTYIMHSNNHQTSHRPPPYRRNVPRYHTXXXXXXXXXXXXKCIXXXXXXXXXX 60

Query: 61  XXXXXSLAYFIVTFYRPKIPSYKVADFNVHVFNVKQDFSLYTEFIVIVESNNPNENIDFI 120
           XXXXXSLAYFIVTFYRPKIPSYKVADFNVHVFNVKQDFSLYTEFIVIVESNNPNENIDFI
Sbjct: 61  XXXXXSLAYFIVTFYRPKIPSYKVADFNVHVFNVKQDFSLYTEFIVIVESNNPNENIDFI 120

Query: 121 YGRGSSVSVLYNDSMLCAGKIPNFRQPPRNVTDISILLSGVSEFGSGLQEALMQNRHSGQ 180
           YGRGSSVSVLYNDSMLCAGKIPNFRQPPRNVTDISILLSGVSEFGSGLQEALMQNRHSGQ
Sbjct: 121 YGRGSSVSVLYNDSMLCAGKIPNFRQPPRNVTDISILLSGVSEFGSGLQEALMQNRHSGQ 180

Query: 181 IPLLVAVKVPVTVVIGGLALRKINVLVNCSLVVDNLSPNKTVGILSSNYTYGATL 236
           IPLLVAVKVPVTVVIGGLALRKINVLVNCSLVVDNLSPNKTVGILSSNYTYGATL
Sbjct: 181 IPLLVAVKVPVTVVIGGLALRKINVLVNCSLVVDNLSPNKTVGILSSNYTYGATL 235

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BLAST of Carg19116 vs. NCBI nr
Match: XP_023531997.1 (NDR1/HIN1-like protein 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 389.8 bits (1000), Expect = 6.5e-105
Identity = 226/235 (96.17%), Postives = 229/235 (97.45%), Query Frame = 0


Query: 1   MEESPTKPTYIMHSNNHQTSHRPPPYRRNVPRYHTXXXXXXXXXXXXKCIXXXXXXXXXX 60
           MEESP KPTYIMHS+NHQTSHRPPPYRRNVPRYHT   XXXXXXXX KCIXXXXXXXXXX
Sbjct: 1   MEESPPKPTYIMHSDNHQTSHRPPPYRRNVPRYHT-KAXXXXXXXXLKCIXXXXXXXXXX 60

Query: 61  XXXXXSLAYFIVTFYRPKIPSYKVADFNVHVFNVKQDFSLYTEFIVIVESNNPNENIDFI 120
           XXXXXSLAYFIVTFYRPKIPSYKVADF+VHVFNVK DFSLYTEFIVIVESNNPNENIDFI
Sbjct: 61  XXXXXSLAYFIVTFYRPKIPSYKVADFDVHVFNVKPDFSLYTEFIVIVESNNPNENIDFI 120

Query: 121 YGRGSSVSVLYNDSMLCAGKIPNFRQPPRNVTDISILLSGVSEFGSGLQEALMQNRHSGQ 180
           YGRGSSVSVLYNDSMLCAGKIPNFRQPPRNVTDISILLSGVSEFGSGLQEALMQNRHSG+
Sbjct: 121 YGRGSSVSVLYNDSMLCAGKIPNFRQPPRNVTDISILLSGVSEFGSGLQEALMQNRHSGK 180

Query: 181 IPLLVAVKVPVTVVIGGLALRKINVLVNCSLVVDNLSPNKTVGILSSNYTYGATL 236
           IPLLVAVKVPVTVVIGGLALRKINVLVNCSLVVDNLSPNKTVGILSSNYTYGATL
Sbjct: 181 IPLLVAVKVPVTVVIGGLALRKINVLVNCSLVVDNLSPNKTVGILSSNYTYGATL 234

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BLAST of Carg19116 vs. NCBI nr
Match: XP_022988931.1 (NDR1/HIN1-like protein 6 [Cucurbita maxima])

HSP 1 Score: 342.0 bits (876), Expect = 1.6e-90
Identity = 209/235 (88.94%), Postives = 215/235 (91.49%), Query Frame = 0


Query: 1   MEESPTKPTYIMHSNNHQTSHRPPPYRRNVPRYHTXXXXXXXXXXXXKCIXXXXXXXXXX 60
           MEESP KPT IMHS+NHQTSHRP            XXXXXXXXXXXX   XXXXXXXXXX
Sbjct: 1   MEESPPKPTNIMHSDNHQTSHRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXSLAYFIVTFYRPKIPSYKVADFNVHVFNVKQDFSLYTEFIVIVESNNPNENIDFI 120
           XXXXXSLAYFIVTFYRPKIPSYKV+DFNVHVFNVK DFSLYTEFIVIVESNNPNENIDFI
Sbjct: 61  XXXXXSLAYFIVTFYRPKIPSYKVSDFNVHVFNVKPDFSLYTEFIVIVESNNPNENIDFI 120

Query: 121 YGRGSSVSVLYNDSMLCAGKIPNFRQPPRNVTDISILLSGVSEFGSGLQEALMQNRHSGQ 180
           YGRGSSVSVLYNDSMLCAGKIPNFRQPP NVTD+SILLSGVSEFGSG+QEALMQNRHSG+
Sbjct: 121 YGRGSSVSVLYNDSMLCAGKIPNFRQPPMNVTDMSILLSGVSEFGSGMQEALMQNRHSGK 180

Query: 181 IPLLVAVKVPVTVVIGGLALRKINVLVNCSLVVDNLSPNKTVGILSSNYTYGATL 236
           IPLLVAVKVPVTVVIGGLALRKINVLVNCSLVVD+LSPNK VGILSSNYTYGATL
Sbjct: 181 IPLLVAVKVPVTVVIGGLALRKINVLVNCSLVVDDLSPNKKVGILSSNYTYGATL 235

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BLAST of Carg19116 vs. NCBI nr
Match: XP_022148010.1 (NDR1/HIN1-like protein 6 [Momordica charantia])

HSP 1 Score: 283.9 bits (725), Expect = 5.0e-73
Identity = 169/235 (71.91%), Postives = 196/235 (83.40%), Query Frame = 0


Query: 1   MEESPTKPTYIMHSNNHQTSHRPPPYRRNVPRYHTXXXXXXXXXXXXKCIXXXXXXXXXX 60
           M+    KP Y+M S++ Q S RPPPYRRN+PRYH+      XXXXXX   XXXXXXXXXX
Sbjct: 1   MDSGHPKPKYVMLSDS-QASLRPPPYRRNIPRYHS-KSHGGXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXSLAYFIVTFYRPKIPSYKVADFNVHVFNVKQDFSLYTEFIVIVESNNPNENIDFI 120
           XXXXX   YF+ ++Y P+IPSYKV+DF+VH F+VK DFSL+TEFIVIV ++NPN NI+F+
Sbjct: 61  XXXXXGFGYFLWSYYSPQIPSYKVSDFSVHAFDVKPDFSLHTEFIVIVRADNPNNNIEFV 120

Query: 121 YGRGSSVSVLYNDSMLCAGKIPNFRQPPRNVTDISILLSGVSEFGSGLQEALMQNRHSGQ 180
           YG+ SSVSVLY+ S LCAGKIPNFRQP +NVTDI+ILLSG SEFGSGLQEALMQNRHSG+
Sbjct: 121 YGKDSSVSVLYSKSQLCAGKIPNFRQPSKNVTDINILLSGNSEFGSGLQEALMQNRHSGK 180

Query: 181 IPLLVAVKVPVTVVIGGLALRKINVLVNCSLVVDNLSPNKTVGILSSNYTYGATL 236
           IPL V VKVPVTVV+GG + RKI VLVNCSLVVDNLSPNK  GILS+NY+YGATL
Sbjct: 181 IPLFVQVKVPVTVVVGGFSFRKITVLVNCSLVVDNLSPNKKAGILSTNYSYGATL 233

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BLAST of Carg19116 vs. NCBI nr
Match: XP_008455332.1 (PREDICTED: NDR1/HIN1-Like protein 3-like [Cucumis melo])

HSP 1 Score: 282.7 bits (722), Expect = 1.1e-72
Identity = 179/236 (75.85%), Postives = 201/236 (85.17%), Query Frame = 0


Query: 3   ESPTKPTYIMHS-NNHQTSHRPPPYRRNVPRYHT---XXXXXXXXXXXXKCIXXXXXXXX 62
           E+P KP Y+M S N+HQTS RPPPYRRNVPRY +    XXXXXXXXXXX   XXXXXXXX
Sbjct: 2   EAPPKPKYVMLSDNHHQTSLRPPPYRRNVPRYQSKAHGXXXXXXXXXXXXXXXXXXXXXX 61

Query: 63  XXXXXXXSLAYFIVTFYRPKIPSYKVADFNVHVFNVKQDFSLYTEFIVIVESNNPNENID 122
           XXXXXXX           P+IPSYKV++F+VH FNVK DFSLYTEFIVIV+++NPN+NI 
Sbjct: 62  XXXXXXXXXXXXXXXXXXPQIPSYKVSNFSVHAFNVKPDFSLYTEFIVIVKADNPNQNIG 121

Query: 123 FIYGRGSSVSVLYNDSMLCAGKIPNFRQPPRNVTDISILLSGVSEFGSGLQEALMQNRHS 182
           FIYG+ SSVSV+Y+ S LC+GKIPNFRQP +NVTDISILLSG SEFGSGLQEALMQNRHS
Sbjct: 122 FIYGKNSSVSVMYSKSELCSGKIPNFRQPSKNVTDISILLSGNSEFGSGLQEALMQNRHS 181

Query: 183 GQIPLLVAVKVPVTVVIGGLALRKINVLVNCSLVVDNLSPNKTVGILSSNYTYGAT 235
           G+IPLLV VKVPVTVVIG L+L+K+NVLVNCSLVVDNLSPNK VGILSSNYTYGA+
Sbjct: 182 GKIPLLVEVKVPVTVVIGSLSLKKVNVLVNCSLVVDNLSPNKKVGILSSNYTYGAS 237

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BLAST of Carg19116 vs. TAIR10
Match: AT1G54540.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 126.3 bits (316), Expect = 2.4e-29
Identity = 64/167 (38.32%), Postives = 101/167 (60.48%), Query Frame = 0


Query: 69  YFIVTFYRPKIPSYKVADFNVHVFNVKQDFSLYTEFIVIVESNNPNENIDFIYGRGSSVS 128
           YF+   + PK+PSY+V    V    +  D SL  EF V + + NPNE I   Y +G  + 
Sbjct: 76  YFV---FHPKLPSYEVNSLRVTNLGINLDLSLSAEFKVEITARNPNEKIGIYYEKGGHIG 135

Query: 129 VLYNDSMLCAGKIPNFRQPPRNVTDISILLSGVSEFGSGLQEALMQNRHSGQIPLLVAVK 188
           V Y+ + LC G IP F Q  RNVT +++ L+G +++G+ +  AL Q + +G++PL + V 
Sbjct: 136 VWYDKTKLCEGPIPRFYQGHRNVTKLNVALTGRAQYGNTVLAALQQQQQTGRVPLDLKVN 195

Query: 189 VPVTVVIGGLALRKINVLVNCSLVVDNLSPNKTVGILSSNYTYGATL 236
            PV + +G L ++KI +L +C LVVD+LS N  + I +S+ ++ A L
Sbjct: 196 APVAIKLGNLKMKKIRILGSCKLVVDSLSTNNNINIKASDCSFKAKL 239

[Close]

BLAST of Carg19116 vs. TAIR10
Match: AT5G36970.1 (NDR1/HIN1-like 25)

HSP 1 Score: 108.2 bits (269), Expect = 6.9e-24
Identity = 59/158 (37.34%), Postives = 85/158 (53.80%), Query Frame = 0


Query: 75  YRPKIPSYKVADFNVHVFNVKQDFSLYTEFIVIVESNNPNENIDFIYGRGSSVSVLYNDS 134
           +RPK P Y +    +  F + QD SL T F V + + NPNE I   Y  GS +SVLY  +
Sbjct: 87  FRPKFPDYNIDRLQLTRFQLNQDLSLSTAFNVTITAKNPNEKIGIYYEDGSKISVLYMQT 146

Query: 135 MLCAGKIPNFRQPPRNVTDISILLSGVSEFGSGLQEALM-QNRHSGQIPLLVAVKVPVTV 194
            +  G +P F Q   N T I + ++G ++  + L   L  Q R +G IPL + V  PV +
Sbjct: 147 RISNGSLPKFYQGHENTTIILVEMTGFTQNATSLMTTLQEQQRLTGSIPLRIRVTQPVRI 206

Query: 195 VIGGLALRKINVLVNCSLVVDNLSPNKTVGILSSNYTY 232
            +G L L K+  LV C + VD+L+ N  + + SSN  Y
Sbjct: 207 KLGKLKLMKVRFLVRCGVSVDSLAANSVIRVRSSNCKY 244

[Close]

BLAST of Carg19116 vs. TAIR10
Match: AT1G65690.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 101.3 bits (251), Expect = 8.4e-22
Identity = 57/155 (36.77%), Postives = 85/155 (54.84%), Query Frame = 0


Query: 75  YRPKIPSYKVADFNVHVFNVKQDFSLYTEFIVIVESNNPNENIDFIYGRGSSVSVLYNDS 134
           ++PK+P Y +    +  F + QD SL T F V + + NPNE I   Y  GS ++V Y + 
Sbjct: 91  FKPKLPDYSIDRLQLTRFALNQDSSLTTAFNVTITAKNPNEKIGIYYEDGSKITVWYMEH 150

Query: 135 MLCAGKIPNFRQPPRNVTDISILLSGVSEFGSGLQEAL-MQNRHSGQIPLLVAVKVPVTV 194
            L  G +P F Q   N T I + ++G ++  SGL+  L  Q + +G IPL + V  PV V
Sbjct: 151 QLSNGSLPKFYQGHENTTVIYVEMTGQTQNASGLRTTLEEQQQRTGNIPLRIRVNQPVRV 210

Query: 195 VIGGLALRKINVLVNCSLVVDNLSPNKTVGILSSN 229
             G L L ++  LV C + VD+L+ N  + I SS+
Sbjct: 211 KFGKLKLFEVRFLVRCGVFVDSLATNNVIKIQSSS 245

[Close]

BLAST of Carg19116 vs. TAIR10
Match: AT2G27080.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 79.7 bits (195), Expect = 2.6e-15
Identity = 59/221 (26.70%), Postives = 92/221 (41.63%), Query Frame = 0


Query: 4   SPTKPTYIMHSNNHQTSHRPPPYRRNVPRYHTXXXXXXXXXXXXKCIXXXXXXXXXXXXX 63
           +P   TY++     Q    PPP   N  R+               C              
Sbjct: 31  APPPSTYVIQVPKDQIYRIPPP--ENAHRFEQLSRKKTNRSNCRCCFCSFLAAVFILIVL 90

Query: 64  XXSLAYFIVTFYRPKIPSYKVADFNVHVFNVKQDFSLYTEFIVIVESNNPNENIDFIYGR 123
                  +   YRP+ P Y +  F+V   N+     +   F V V S N N  I   Y +
Sbjct: 91  AGISFAVLYLIYRPEAPKYSIEGFSVSGINLNSTSPISPSFNVTVRSRNGNGKIGVYYEK 150

Query: 124 GSSVSVLYNDSMLCAGKIPNFRQPPRNVTDISILLSGVS-EFGSGLQEALMQNRHSGQIP 183
            SSV V YND  +  G +P F QP +NVT + ++LSG   +  SG+++ +        +P
Sbjct: 151 ESSVDVYYNDVDISNGVMPVFYQPAKNVTVVKLVLSGSKIQLTSGMRKEMRNEVSKKTVP 210

Query: 184 LLVAVKVPVTVVIGGLALRKINVLVNCSLVVDNL-SPNKTV 223
             + +K PV +  G +    + V V+C + VD L +P++ V
Sbjct: 211 FKLKIKAPVKIKFGSVKTWTMIVNVDCDVTVDKLTAPSRIV 249

[Close]

BLAST of Carg19116 vs. TAIR10
Match: AT3G52470.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 43.5 bits (101), Expect = 2.1e-04
Identity = 42/168 (25.00%), Postives = 66/168 (39.29%), Query Frame = 0


Query: 69  YFIVTFYRPKIPSYKVADFNVHVFNVKQDFSLYTEFIVIVESNNPNENIDFIYGRGSSVS 128
           + +    RP  P + + D  V+ FN+ Q   L + F V + S NPN  I   Y R    +
Sbjct: 35  FLVWVILRPTKPRFVLQDATVYAFNLSQPNLLTSNFQVTIASRNPNSKIGIYYDRLHVYA 94

Query: 129 VLYNDSMLCAGKIPNFRQPPRNVTDISILLSGVS-EFGSGLQEALMQNRHSGQIPLLVAV 188
              N  +     IP   Q  + V   S  + G +         AL + +  G + L++  
Sbjct: 95  TYMNQQITLRTAIPPTYQGHKEVNVWSPFVYGTAVPIAPYNSVALGEEKDRGFVGLMIRA 154

Query: 189 KVPVTVVIGGLALRKINVLVNCSLVVDNLSPNKTVGILSSNYTYGATL 236
              V   +  L   K ++ V C   + NL  NK  G+L  +     TL
Sbjct: 155 DGTVRWKVRTLITGKYHIHVRCQAFI-NLG-NKAAGVLVGDNAVKYTL 200

[Close]

BLAST of Carg19116 vs. Swiss-Prot
Match: sp|Q8LD98|NHL6_ARATH (NDR1/HIN1-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=NHL6 PE=1 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.5e-20
Identity = 57/155 (36.77%), Postives = 85/155 (54.84%), Query Frame = 0


Query: 75  YRPKIPSYKVADFNVHVFNVKQDFSLYTEFIVIVESNNPNENIDFIYGRGSSVSVLYNDS 134
           ++PK+P Y +    +  F + QD SL T F V + + NPNE I   Y  GS ++V Y + 
Sbjct: 91  FKPKLPDYSIDRLQLTRFALNQDSSLTTAFNVTITAKNPNEKIGIYYEDGSKITVWYMEH 150

Query: 135 MLCAGKIPNFRQPPRNVTDISILLSGVSEFGSGLQEAL-MQNRHSGQIPLLVAVKVPVTV 194
            L  G +P F Q   N T I + ++G ++  SGL+  L  Q + +G IPL + V  PV V
Sbjct: 151 QLSNGSLPKFYQGHENTTVIYVEMTGQTQNASGLRTTLEEQQQRTGNIPLRIRVNQPVRV 210

Query: 195 VIGGLALRKINVLVNCSLVVDNLSPNKTVGILSSN 229
             G L L ++  LV C + VD+L+ N  + I SS+
Sbjct: 211 KFGKLKLFEVRFLVRCGVFVDSLATNNVIKIQSSS 245

[Close]

BLAST of Carg19116 vs. Swiss-Prot
Match: sp|Q9ZVD2|NHL13_ARATH (NDR1/HIN1-like protein 13 OS=Arabidopsis thaliana OX=3702 GN=NHL13 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.7e-14
Identity = 59/221 (26.70%), Postives = 92/221 (41.63%), Query Frame = 0


Query: 4   SPTKPTYIMHSNNHQTSHRPPPYRRNVPRYHTXXXXXXXXXXXXKCIXXXXXXXXXXXXX 63
           +P   TY++     Q    PPP   N  R+               C              
Sbjct: 31  APPPSTYVIQVPKDQIYRIPPP--ENAHRFEQLSRKKTNRSNCRCCFCSFLAAVFILIVL 90

Query: 64  XXSLAYFIVTFYRPKIPSYKVADFNVHVFNVKQDFSLYTEFIVIVESNNPNENIDFIYGR 123
                  +   YRP+ P Y +  F+V   N+     +   F V V S N N  I   Y +
Sbjct: 91  AGISFAVLYLIYRPEAPKYSIEGFSVSGINLNSTSPISPSFNVTVRSRNGNGKIGVYYEK 150

Query: 124 GSSVSVLYNDSMLCAGKIPNFRQPPRNVTDISILLSGVS-EFGSGLQEALMQNRHSGQIP 183
            SSV V YND  +  G +P F QP +NVT + ++LSG   +  SG+++ +        +P
Sbjct: 151 ESSVDVYYNDVDISNGVMPVFYQPAKNVTVVKLVLSGSKIQLTSGMRKEMRNEVSKKTVP 210

Query: 184 LLVAVKVPVTVVIGGLALRKINVLVNCSLVVDNL-SPNKTV 223
             + +K PV +  G +    + V V+C + VD L +P++ V
Sbjct: 211 FKLKIKAPVKIKFGSVKTWTMIVNVDCDVTVDKLTAPSRIV 249

[Close]

BLAST of Carg19116 vs. TrEMBL
Match: tr|A0A1S3C0T7|A0A1S3C0T7_CUCME (NDR1/HIN1-Like protein 3-like OS=Cucumis melo OX=3656 GN=LOC103495521 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 7.4e-73
Identity = 179/236 (75.85%), Postives = 201/236 (85.17%), Query Frame = 0


Query: 3   ESPTKPTYIMHS-NNHQTSHRPPPYRRNVPRYHT---XXXXXXXXXXXXKCIXXXXXXXX 62
           E+P KP Y+M S N+HQTS RPPPYRRNVPRY +    XXXXXXXXXXX   XXXXXXXX
Sbjct: 2   EAPPKPKYVMLSDNHHQTSLRPPPYRRNVPRYQSKAHGXXXXXXXXXXXXXXXXXXXXXX 61

Query: 63  XXXXXXXSLAYFIVTFYRPKIPSYKVADFNVHVFNVKQDFSLYTEFIVIVESNNPNENID 122
           XXXXXXX           P+IPSYKV++F+VH FNVK DFSLYTEFIVIV+++NPN+NI 
Sbjct: 62  XXXXXXXXXXXXXXXXXXPQIPSYKVSNFSVHAFNVKPDFSLYTEFIVIVKADNPNQNIG 121

Query: 123 FIYGRGSSVSVLYNDSMLCAGKIPNFRQPPRNVTDISILLSGVSEFGSGLQEALMQNRHS 182
           FIYG+ SSVSV+Y+ S LC+GKIPNFRQP +NVTDISILLSG SEFGSGLQEALMQNRHS
Sbjct: 122 FIYGKNSSVSVMYSKSELCSGKIPNFRQPSKNVTDISILLSGNSEFGSGLQEALMQNRHS 181

Query: 183 GQIPLLVAVKVPVTVVIGGLALRKINVLVNCSLVVDNLSPNKTVGILSSNYTYGAT 235
           G+IPLLV VKVPVTVVIG L+L+K+NVLVNCSLVVDNLSPNK VGILSSNYTYGA+
Sbjct: 182 GKIPLLVEVKVPVTVVIGSLSLKKVNVLVNCSLVVDNLSPNKKVGILSSNYTYGAS 237

[Close]

BLAST of Carg19116 vs. TrEMBL
Match: tr|A0A0A0K2B4|A0A0A0K2B4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047380 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 1.7e-72
Identity = 177/236 (75.00%), Postives = 201/236 (85.17%), Query Frame = 0


Query: 3   ESPTKPTYIMHS-NNHQTSHRPPPYRRNVPRYHTXXXXXXXXXXXXKCIXXXXXXXXXXX 62
           E+P KP Y+M S ++HQ S RPPPYRRNVPRYH+XXXXXXXXXXXX   XXXXXXXXXXX
Sbjct: 2   EAPPKPKYVMLSDDHHQASLRPPPYRRNVPRYHSXXXXXXXXXXXXXXXXXXXXXXXXXX 61

Query: 63  XXXXSLAYFIVTF--YRPKIPSYKVADFNVHVFNVKQDFSLYTEFIVIVESNNPNENIDF 122
           XXXX        F  Y P++PSYKV+DF+VH FNVK DFSLYTEFIVIV+++NPN NI F
Sbjct: 62  XXXXXXXXXXXLFYYYNPQVPSYKVSDFSVHAFNVKSDFSLYTEFIVIVKADNPNANIGF 121

Query: 123 IYGRGSSVSVLYNDSMLCAGKIPNFRQPPRNVTDISILLSGVSEFGSGLQEALMQNRHSG 182
           +YG+ SSVSV+Y+ S LC+G+IPNFRQP +NVTDISILLSG SEFGSGLQEALMQNRHSG
Sbjct: 122 VYGKDSSVSVMYSKSELCSGQIPNFRQPSKNVTDISILLSGNSEFGSGLQEALMQNRHSG 181

Query: 183 QIPLLVAVKVPVTVVIGGLALRKINVLVNCSLVVDNLSPNKTVGILSSNYTYGATL 236
           +IPLLV VKVPVTVVIG L+L+K+NV VNCSLVVD LSPNK V ILSSNYTYGA+L
Sbjct: 182 KIPLLVKVKVPVTVVIGSLSLKKVNVFVNCSLVVDKLSPNKKVEILSSNYTYGASL 237

[Close]

BLAST of Carg19116 vs. TrEMBL
Match: tr|B9RW35|B9RW35_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1175710 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.2e-56
Identity = 145/231 (62.77%), Postives = 178/231 (77.06%), Query Frame = 0


Query: 5   PTKPTYIMHSNNHQTSHRPPPYRRNVPRYHTXXXXXXXXXXXXKCIXXXXXXXXXXXXXX 64
           P +P Y+M ++NH T+ RPPP RRN+PRYH+ XXXXXXXXXXX   XXXXXXXXXXXXXX
Sbjct: 6   PYQPKYVMLNSNHATNLRPPPQRRNIPRYHSNXXXXXXXXXXXXXXXXXXXXXXXXXXXX 65

Query: 65  XSLAYFIVTFYRPKIPSYKVADFNVHVFNVKQDFSLYTEFIVIVESNNPNENIDFIYGRG 124
           X   + + +  +P+IP Y V  F+VH FNV+ DFSLYTEF+V V+S+NPN +I F YG+ 
Sbjct: 66  XXXLFALYSALQPEIPHYNVDRFDVHAFNVQPDFSLYTEFVVTVKSDNPNMHIGFDYGKE 125

Query: 125 SSVSVLYNDSMLCAGKIPNFRQPPRNVTDISILLSGVSEFGSGLQEALMQNRHSGQIPLL 184
           SSV V Y DS LC+G IP F QP  N++ I I+L G SEFGSGLQEALMQNR++G+IPLL
Sbjct: 126 SSVVVTYRDSPLCSGSIPTFHQPHHNISLIPIVLKGKSEFGSGLQEALMQNRNTGRIPLL 185

Query: 185 VAVKVPVTVVIGGLALRKINVLVNCSLVVDNLSPNKTVGILSSNYTYGATL 236
           V VK PV++V+  L LR++ VL+NCSLVVDNLSPNK   ILSS+Y YG  L
Sbjct: 186 VEVKAPVSIVVQELPLRQVTVLINCSLVVDNLSPNKKAKILSSSYQYGVEL 236

[Close]

BLAST of Carg19116 vs. TrEMBL
Match: tr|A0A2P4IIW4|A0A2P4IIW4_QUESU (Ndr1/hin1-like protein 13 OS=Quercus suber OX=58331 GN=CFP56_20748 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.5e-54
Identity = 124/226 (54.87%), Postives = 159/226 (70.35%), Query Frame = 0


Query: 8   PTYIMHS--NNHQTSHRPPPYRRNVPRYHTXXXXXXXXXXXXKCIXXXXXXXXXXXXXXX 67
           P Y+M S  N++Q + RPPPYRRN+PRYH+            K  XXXXXXXXXXX    
Sbjct: 12  PKYVMLSGNNDNQGNLRPPPYRRNIPRYHS---KKSRGSCLFKXXXXXXXXXXXXXALFL 71

Query: 68  SLAYFIVTFYRPKIPSYKVADFNVHVFNVKQDFSLYTEFIVIVESNNPNENIDFIYGRGS 127
            L + +   YRPK+PSY V  F VH F ++ D SL+TEF V+V++ NPN  + F+YG+ S
Sbjct: 72  GLTFLLYNMYRPKVPSYNVDSFGVHAFELQSDMSLFTEFAVVVKAENPNSYMGFLYGKDS 131

Query: 128 SVSVLYNDSMLCAGKIPNFRQPPRNVTDISILLSGVSEFGSGLQEALMQNRHSGQIPLLV 187
            V+V Y+DS LC+GKIP+F QP +N T I+I+L G S FGSGLQ+AL++NRH+G+IPLLV
Sbjct: 132 QVNVSYSDSQLCSGKIPSFYQPKKNTTMINIVLKGTSPFGSGLQQALLENRHTGKIPLLV 191

Query: 188 AVKVPVTVVIGGLALRKINVLVNCSLVVDNLSPNKTVGILSSNYTY 232
            VK P+ VV+G   LR  +V VNCSLV+DNLSPNK V ILS+ Y Y
Sbjct: 192 RVKAPINVVLGRFPLRGFDVYVNCSLVIDNLSPNKKVEILSAKYDY 234

[Close]

BLAST of Carg19116 vs. TrEMBL
Match: tr|B9I5K6|B9I5K6_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_013G135800v3 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 6.1e-51
Identity = 138/225 (61.33%), Postives = 164/225 (72.89%), Query Frame = 0


Query: 7   KPTYIMHSNNHQTSHRPPPYRRNVPRYHTXXXXXXXXXXXXKCIXXXXXXXXXXXXXXXS 66
           +P Y+M + N+ +S RPPP RRN+PRY +  XXXXXXXX  K  XXXXXXXXXXXXXXX 
Sbjct: 8   QPNYVMLNYNNSSSVRPPPQRRNIPRYQS--XXXXXXXXCLKXXXXXXXXXXXXXXXXXX 67

Query: 67  LAYFIVTFYRPKIPSYKVADFNVHVFNVKQDFSLYTEFIVIVESNNPNENIDFIYGRGSS 126
           +  FI     PK+P Y VA F+V+ FN+  DFSLYTEF V V++NNPN  I FIYG+ SS
Sbjct: 68  VIAFIYMTLNPKMPEYNVASFDVNAFNMAPDFSLYTEFAVTVKANNPNTGISFIYGKESS 127

Query: 127 VSVLYNDSMLCAGKIPNFRQPPRNVTDISILLSGVSEFGSGLQEALMQNRHSGQIPLLVA 186
           V V Y+DS LC+GK+P F QP  N T I ++L G SEFGSGLQE LM NR +G+IPLLV 
Sbjct: 128 VVVAYSDSTLCSGKLPAFHQPGVNTTMIQVVLKGKSEFGSGLQEVLMDNRETGKIPLLVM 187

Query: 187 VKVPVTVVIGGLALRKINVLVNCSLVVDNLSPNKTVGILSSNYTY 232
           V  PV+VV+    LR++ V VNCSLVVDNLSPNK V ILSS Y Y
Sbjct: 188 VNAPVSVVLKSFPLREVIVNVNCSLVVDNLSPNKRVRILSSEYAY 230

The following BLAST results are available for this feature:

BLAST of Carg19116 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930831.1	3.3e-109	100.00	NDR1/HIN1-like protein 6 [Cucurbita moschata]	[more]
XP_023531997.1	6.5e-105	96.17	NDR1/HIN1-like protein 6 [Cucurbita pepo subsp. pepo]	[more]
XP_022988931.1	1.6e-90	88.94	NDR1/HIN1-like protein 6 [Cucurbita maxima]	[more]
XP_022148010.1	5.0e-73	71.91	NDR1/HIN1-like protein 6 [Momordica charantia]	[more]
XP_008455332.1	1.1e-72	75.85	PREDICTED: NDR1/HIN1-Like protein 3-like [Cucumis melo]	[more]

BLAST of Carg19116 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G54540.1	2.4e-29	38.32	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT5G36970.1	6.9e-24	37.34	NDR1/HIN1-like 25	[more]
AT1G65690.1	8.4e-22	36.77	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT2G27080.1	2.6e-15	26.70	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT3G52470.1	2.1e-04	25.00	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]

BLAST of Carg19116 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8LD98\|NHL6_ARATH	1.5e-20	36.77	NDR1/HIN1-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=NHL6 PE=1 SV=1	[more]
sp\|Q9ZVD2\|NHL13_ARATH	4.7e-14	26.70	NDR1/HIN1-like protein 13 OS=Arabidopsis thaliana OX=3702 GN=NHL13 PE=2 SV=1	[more]

BLAST of Carg19116 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C0T7\|A0A1S3C0T7_CUCME	7.4e-73	75.85	NDR1/HIN1-Like protein 3-like OS=Cucumis melo OX=3656 GN=LOC103495521 PE=4 SV=1	[more]
tr\|A0A0A0K2B4\|A0A0A0K2B4_CUCSA	1.7e-72	75.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047380 PE=4 SV=1	[more]
tr\|B9RW35\|B9RW35_RICCO	2.2e-56	62.77	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1175710 PE=4 SV=1	[more]
tr\|A0A2P4IIW4\|A0A2P4IIW4_QUESU	4.5e-54	54.87	Ndr1/hin1-like protein 13 OS=Quercus suber OX=58331 GN=CFP56_20748 PE=4 SV=1	[more]
tr\|B9I5K6\|B9I5K6_POPTR	6.1e-51	61.33	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_013G135800v3 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004864	LEA_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19116-RA	Carg19116-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA_2 subgroup	PFAM	PF03168	LEA_2	coord: 109..209 e-value: 1.1E-7 score: 32.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..23
None	No IPR available	PANTHER	PTHR31852	FAMILY NOT NAMED	coord: 19..232
None	No IPR available	PANTHER	PTHR31852:SF35	SUBFAMILY NOT NAMED	coord: 19..232

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19116	Cla007744	Watermelon (97103) v1	carwmB0718
Carg19116	Csa7G047380	Cucumber (Chinese Long) v2	carcuB0739
Carg19116	MELO3C018746	Melon (DHL92) v3.5.1	carmeB0715
Carg19116	ClCG02G001110	Watermelon (Charleston Gray)	carwcgB0696
Carg19116	CSPI07G04520	Wild cucumber (PI 183967)	carcpiB0755
Carg19116	Cucsa.147780	Cucumber (Gy14) v1	carcgyB0810
Carg19116	CmaCh19G009810	Cucurbita maxima (Rimu)	carcmaB1008
Carg19116	CmaCh11G018710	Cucurbita maxima (Rimu)	carcmaB1006
Carg19116	CmoCh19G010160	Cucurbita moschata (Rifu)	carcmoB0981
Carg19116	CmoCh11G019480	Cucurbita moschata (Rifu)	carcmoB0979
Carg19116	Lsi11G015400	Bottle gourd (USVL1VR-Ls)	carlsiB659
Carg19116	Cp4.1LG15g07910	Cucurbita pepo (Zucchini)	carcpeB1013
Carg19116	Cp4.1LG04g03100	Cucurbita pepo (Zucchini)	carcpeB1015
Carg19116	CsGy7G004120	Cucumber (Gy14) v2	carcgybB0717
Carg19116	MELO3C018746.2	Melon (DHL92) v3.6.1	carmedB0728
Carg19116	CsaV3_7G004330	Cucumber (Chinese Long) v3	carcucB0758
Carg19116	Cla97C02G027530	Watermelon (97103) v2	carwmbB0752
Carg19116	Bhi05G001598	Wax gourd	carwgoB0847

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg19116	Carg19230	Silver-seed gourd	carcarB590

The following block(s) are covering this gene:


Gene	Organism	Block
Carg19116	Cucumber (Chinese Long) v3	carcucB0757
Carg19116	Bottle gourd (USVL1VR-Ls)	carlsiB657
Carg19116	Melon (DHL92) v3.5.1	carmeB0714
Carg19116	Melon (DHL92) v3.6.1	carmedB0727
Carg19116	Watermelon (Charleston Gray)	carwcgB0695
Carg19116	Watermelon (97103) v1	carwmB0719
Carg19116	Watermelon (97103) v2	carwmbB0751
Carg19116	Wax gourd	carwgoB0849
Carg19116	Silver-seed gourd	carcarB035
Carg19116	Silver-seed gourd	carcarB176
Carg19116	Cucumber (Gy14) v2	carcgybB0716
Carg19116	Cucumber (Gy14) v1	carcgyB0808
Carg19116	Cucumber (Gy14) v1	carcgyB0809
Carg19116	Cucurbita maxima (Rimu)	carcmaB1007
Carg19116	Cucurbita maxima (Rimu)	carcmaB1010
Carg19116	Cucurbita moschata (Rifu)	carcmoB0980
Carg19116	Cucurbita moschata (Rifu)	carcmoB0983
Carg19116	Cucurbita pepo (Zucchini)	carcpeB1012
Carg19116	Cucurbita pepo (Zucchini)	carcpeB1016