Csa7G047380 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G047380
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Late embryogenesis abundant hydroxyproline-rich glycoprotein; contains IPR004864 (Late embryogenesis abundant protein, LEA-14)
Location	Chr7 : 2895166 .. 2896098 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAAAAAAAATACAACGAACAAACAGACAACAGCCTCTGTTTTTCCCCTTTCCCCTCATTTTGTTTAAACAAAGCTATGCCCATCAAACGGTCAACGCCCTTCAACTTCATTTTCAAATATATCTCTTCTCCTTTTTCCCCATTCTCATGGAAGCTCCACCTAAACCAAAATATGTTATGCTTTCCGATGACCACCACCAAGCCAGCCTCCGCCCTCCCCCCTATCGCCGCAACGTCCCTCGTTACCATTCCAAAGCCAACGGCGGAGGTGGTGGCGGTGTTGGTTGTTGTCTAAAATGCATCTGTTGTTGTTATTGTTTTATCTTCTTCCTTATCTTTGCTCTATTCGGCCTCGGCTATTTCCTTTTCTATTATTACAACCCCCAAGTCCCTTCTTACAAAGTATCTGATTTCAGTGTCCATGCCTTCAATGTCAAATCCGACTTCAGTTTATACACTGAATTCATCGTTATCGTTAAAGCCGATAACCCAAATGCAAACATTGGTTTCGTTTATGGGAAAGATAGCTCTGTTTCTGTTATGTACTCTAAATCGGAGCTCTGTTCCGGGCAGATTCCAAATTTCCGGCAGCCGTCGAAGAATGTAACGGATATAAGTATTTTGTTGAGTGGGAATAGTGAATTTGGAAGTGGGTTACAAGAAGCATTGATGCAGAACAGACATAGTGGGAAAATTCCGTTGCTTGTTAAGGTGAAAGTGCCGGTGACGGTGGTGATTGGGAGCTTGTCGTTGAAGAAGGTCAATGTGTTTGTTAATTGTTCATTGGTGGTTGATAAGTTGTCGCCGAATAAGAAAGTTGAGATTTTGTCGAGTAATTATACTTATGGTGCTTCTTTGTGAATCTAAAGCTTTACCCATAGTTTTGTTGCTCTTTCGTTTTTGTGCTATTTAATGGGAATTCCTTTTTTTTT

mRNA sequence

ATGGAAGCTCCACCTAAACCAAAATATGTTATGCTTTCCGATGACCACCACCAAGCCAGCCTCCGCCCTCCCCCCTATCGCCGCAACGTCCCTCGTTACCATTCCAAAGCCAACGGCGGAGGTGGTGGCGGTGTTGGTTGTTGTCTAAAATGCATCTGTTGTTGTTATTGTTTTATCTTCTTCCTTATCTTTGCTCTATTCGGCCTCGGCTATTTCCTTTTCTATTATTACAACCCCCAAGTCCCTTCTTACAAAGTATCTGATTTCAGTGTCCATGCCTTCAATGTCAAATCCGACTTCAGTTTATACACTGAATTCATCGTTATCGTTAAAGCCGATAACCCAAATGCAAACATTGGTTTCGTTTATGGGAAAGATAGCTCTGTTTCTGTTATGTACTCTAAATCGGAGCTCTGTTCCGGGCAGATTCCAAATTTCCGGCAGCCGTCGAAGAATGTAACGGATATAAGTATTTTGTTGAGTGGGAATAGTGAATTTGGAAGTGGGTTACAAGAAGCATTGATGCAGAACAGACATAGTGGGAAAATTCCGTTGCTTGTTAAGGTGAAAGTGCCGGTGACGGTGGTGATTGGGAGCTTGTCGTTGAAGAAGGTCAATGTGTTTGTTAATTGTTCATTGGTGGTTGATAAGTTGTCGCCGAATAAGAAAGTTGAGATTTTGTCGAGTAATTATACTTATGGTGCTTCTTTGTGA

Coding sequence (CDS)

ATGGAAGCTCCACCTAAACCAAAATATGTTATGCTTTCCGATGACCACCACCAAGCCAGCCTCCGCCCTCCCCCCTATCGCCGCAACGTCCCTCGTTACCATTCCAAAGCCAACGGCGGAGGTGGTGGCGGTGTTGGTTGTTGTCTAAAATGCATCTGTTGTTGTTATTGTTTTATCTTCTTCCTTATCTTTGCTCTATTCGGCCTCGGCTATTTCCTTTTCTATTATTACAACCCCCAAGTCCCTTCTTACAAAGTATCTGATTTCAGTGTCCATGCCTTCAATGTCAAATCCGACTTCAGTTTATACACTGAATTCATCGTTATCGTTAAAGCCGATAACCCAAATGCAAACATTGGTTTCGTTTATGGGAAAGATAGCTCTGTTTCTGTTATGTACTCTAAATCGGAGCTCTGTTCCGGGCAGATTCCAAATTTCCGGCAGCCGTCGAAGAATGTAACGGATATAAGTATTTTGTTGAGTGGGAATAGTGAATTTGGAAGTGGGTTACAAGAAGCATTGATGCAGAACAGACATAGTGGGAAAATTCCGTTGCTTGTTAAGGTGAAAGTGCCGGTGACGGTGGTGATTGGGAGCTTGTCGTTGAAGAAGGTCAATGTGTTTGTTAATTGTTCATTGGTGGTTGATAAGTTGTCGCCGAATAAGAAAGTTGAGATTTTGTCGAGTAATTATACTTATGGTGCTTCTTTGTGA

Protein sequence

MEAPPKPKYVMLSDDHHQASLRPPPYRRNVPRYHSKANGGGGGGVGCCLKCICCCYCFIFFLIFALFGLGYFLFYYYNPQVPSYKVSDFSVHAFNVKSDFSLYTEFIVIVKADNPNANIGFVYGKDSSVSVMYSKSELCSGQIPNFRQPSKNVTDISILLSGNSEFGSGLQEALMQNRHSGKIPLLVKVKVPVTVVIGSLSLKKVNVFVNCSLVVDKLSPNKKVEILSSNYTYGASL*

Homology

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BLAST of Csa7G047380 vs. Swiss-Prot
Match: NHL3_ARATH (NDR1/HIN1-Like protein 3 OS=Arabidopsis thaliana GN=NHL3 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.2e-06
Identity = 48/196 (24.49%), Postives = 76/196 (38.78%), Query Frame = 1


Query: 31  PRYHSKANGGGGGGVGCCLKCICCCYCFIFFLIF-------ALFGLGYFLFY-YYNPQVP 90
           P+  S ++G  GGG GC   C+ CC C I  +IF        L G+   + +  + P   
Sbjct: 16  PKKVSHSHGRRGGGCGCLGDCLGCCGCCILSVIFNILITIAVLLGIAALIIWLIFRPNAI 75

Query: 91  SYKVSDFSVHAFNVKSDFSLYTEFIVIVKADNPNANIGFVYGKDSSVSVMYSKSEL-CSG 150
            + V+D  +  F +    +L     +     NPN  IG VY  +  V   Y       S 
Sbjct: 76  KFHVTDAKLTEFTLDPTNNLRYNLDLNFTIRNPNRRIG-VYYDEIEVRGYYGDQRFGMSN 135

Query: 151 QIPNFRQPSKNVTDISILLSGNS--EFGSGLQEALMQNRHSGKIPLLVKVKVPVTVVIGS 210
            I  F Q  KN T +   L G        G ++ L ++ +S    +  K+++ +    G 
Sbjct: 136 NISKFYQGHKNTTVVGTKLVGQQLVLLDGGERKDLNEDVNSQIYRIDAKLRLKIRFKFGL 195

Query: 211 LSLKKVNVFVNCSLVV 216
           +   +    + C L V
Sbjct: 196 IKSWRFKPKIKCDLKV 210

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BLAST of Csa7G047380 vs. TrEMBL
Match: A0A0A0K2B4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G047380 PE=4 SV=1)

HSP 1 Score: 488.4 bits (1256), Expect = 4.9e-135
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 1


Query: 1   MEAPPKPKYVMLSDDHHQASLRPPPYRRNVPRYHSKANGGGGGGVGCCLKCICCCYCFIF 60
           MEAPPKPKYVMLSDDHHQASLRPPPYRRNVPRYHSKANGGGGGGVGCCLKCICCCYCFIF
Sbjct: 1   MEAPPKPKYVMLSDDHHQASLRPPPYRRNVPRYHSKANGGGGGGVGCCLKCICCCYCFIF 60

Query: 61  FLIFALFGLGYFLFYYYNPQVPSYKVSDFSVHAFNVKSDFSLYTEFIVIVKADNPNANIG 120
           FLIFALFGLGYFLFYYYNPQVPSYKVSDFSVHAFNVKSDFSLYTEFIVIVKADNPNANIG
Sbjct: 61  FLIFALFGLGYFLFYYYNPQVPSYKVSDFSVHAFNVKSDFSLYTEFIVIVKADNPNANIG 120

Query: 121 FVYGKDSSVSVMYSKSELCSGQIPNFRQPSKNVTDISILLSGNSEFGSGLQEALMQNRHS 180
           FVYGKDSSVSVMYSKSELCSGQIPNFRQPSKNVTDISILLSGNSEFGSGLQEALMQNRHS
Sbjct: 121 FVYGKDSSVSVMYSKSELCSGQIPNFRQPSKNVTDISILLSGNSEFGSGLQEALMQNRHS 180

Query: 181 GKIPLLVKVKVPVTVVIGSLSLKKVNVFVNCSLVVDKLSPNKKVEILSSNYTYGASL 238
           GKIPLLVKVKVPVTVVIGSLSLKKVNVFVNCSLVVDKLSPNKKVEILSSNYTYGASL
Sbjct: 181 GKIPLLVKVKVPVTVVIGSLSLKKVNVFVNCSLVVDKLSPNKKVEILSSNYTYGASL 237

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BLAST of Csa7G047380 vs. TrEMBL
Match: B9RW35_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1175710 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 7.4e-75
Identity = 142/239 (59.41%), Postives = 174/239 (72.80%), Query Frame = 1


Query: 1   MEAPP--KPKYVMLSDDHHQASLRPPPYRRNVPRYHSKANGGGGGGVGCCLKCICCCYCF 60
           ME PP  +PKYVML+ +H   +LRPPP RRN+PRYHS  NG  GG    CL+C+CCC+CF
Sbjct: 1   MENPPPYQPKYVMLNSNH-ATNLRPPPQRRNIPRYHSNNNGKSGGNG--CLRCLCCCFCF 60

Query: 61  IFFLIFALFGLGYFLFYYYNPQVPSYKVSDFSVHAFNVKSDFSLYTEFIVIVKADNPNAN 120
              L   L    + L+    P++P Y V  F VHAFNV+ DFSLYTEF+V VK+DNPN +
Sbjct: 61  WLLLFIFLAAALFALYSALQPEIPHYNVDRFDVHAFNVQPDFSLYTEFVVTVKSDNPNMH 120

Query: 121 IGFVYGKDSSVSVMYSKSELCSGQIPNFRQPSKNVTDISILLSGNSEFGSGLQEALMQNR 180
           IGF YGK+SSV V Y  S LCSG IP F QP  N++ I I+L G SEFGSGLQEALMQNR
Sbjct: 121 IGFDYGKESSVVVTYRDSPLCSGSIPTFHQPHHNISLIPIVLKGKSEFGSGLQEALMQNR 180

Query: 181 HSGKIPLLVKVKVPVTVVIGSLSLKKVNVFVNCSLVVDKLSPNKKVEILSSNYTYGASL 238
           ++G+IPLLV+VK PV++V+  L L++V V +NCSLVVD LSPNKK +ILSS+Y YG  L
Sbjct: 181 NTGRIPLLVEVKAPVSIVVQELPLRQVTVLINCSLVVDNLSPNKKAKILSSSYQYGVEL 236

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BLAST of Csa7G047380 vs. TrEMBL
Match: A0A059A096_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00959 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 8.2e-74
Identity = 139/232 (59.91%), Postives = 173/232 (74.57%), Query Frame = 1


Query: 1   MEAPPK--PKYVMLSDDHHQASLRPPPYRRNVPRYHSKANGGGGGGVGCCLKCICCCYCF 60
           ME PP   PKYVML D   Q S+RPPPYRRN+PRYHS  +  GGG   CC++CICC  C 
Sbjct: 1   MEPPPPYPPKYVMLQDS--QGSIRPPPYRRNIPRYHSNHHKSGGGS--CCMRCICCFCCS 60

Query: 61  IFFLIFALFGLGYFLFYYYNPQVPSYKVSDFSVHAFNVKSDFSLYTEFIVIVKADNPNAN 120
           +F LIF +  L ++ +  + P+VPSY V  F+ +AFN++ DFSLYTEF+V VKADNPN+N
Sbjct: 61  LFILIFVVATLAFYFYAVFQPRVPSYTVDSFATNAFNMQPDFSLYTEFVVTVKADNPNSN 120

Query: 121 IGFVYGKDSSVSVMYSKSELCSGQIPNFRQPSKNVTDISILLSGNSEFGSGLQEALMQNR 180
           IGF YGKDSSV V Y  S LC+GQ+P F Q  KN+T I +LL G SEFGSGLQEALM+NR
Sbjct: 121 IGFNYGKDSSVMVAYQDSTLCNGQLPAFHQGHKNITMIKVLLKGKSEFGSGLQEALMENR 180

Query: 181 HSGKIPLLVKVKVPVTVVIGSLSLKKVNVFVNCSLVVDKLSPNKKVEILSSN 231
           H+G+IPL V VKVPV +VIG+  L++  V V C+LVVD LSPNKK +I+S++
Sbjct: 181 HTGRIPLNVIVKVPVGIVIGTFPLRRFTVRVICALVVDNLSPNKKTQIVSNS 228

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BLAST of Csa7G047380 vs. TrEMBL
Match: U5FEV5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s13360g PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 8.8e-68
Identity = 126/220 (57.27%), Postives = 163/220 (74.09%), Query Frame = 1


Query: 14  DDHHQASLRPPPYRRNVPRYHSKANGGGGGGVGCCLKCICCCYCFIFFLIFALFGLGYFL 73
           ++ + +S+RPPP RRN+PRYHS  +   G    CCLKC+CCC+CF   +I  L  L   L
Sbjct: 3   NNSNSSSVRPPPQRRNIPRYHSNHHHSHGH---CCLKCVCCCFCFSIVVIIVLASLLSVL 62

Query: 74  FYYYNPQVPSYKVSDFSVHAFNVKSDFSLYTEFIVIVKADNPNANIGFVYGKDSSVSVMY 133
           +   +P++P Y +  F V+AFN+  DFSLYTEF+V+VKA+NPN  I F YGKDSSV V Y
Sbjct: 63  YVTLDPKMPQYNIESFEVNAFNMAPDFSLYTEFVVVVKANNPNKEIAFTYGKDSSVVVAY 122

Query: 134 SKSELCSGQIPNFRQPSKNVTDISILLSGNSEFGSGLQEALMQNRHSGKIPLLVKVKVPV 193
           S S LCSG++P F QP +N T I ++L+G SEFGSGLQEALM NR +G+IPLLV VK P+
Sbjct: 123 SDSTLCSGKLPAFHQPFENTTMIRVVLTGKSEFGSGLQEALMDNRETGRIPLLVIVKAPI 182

Query: 194 TVVIGSLSLKKVNVFVNCSLVVDKLSPNKKVEILSSNYTY 234
           +V++ SL+L++V V VNCSLVVD L+PNK+V ILSS YTY
Sbjct: 183 SVMVKSLALRQVMVNVNCSLVVDNLAPNKRVRILSSTYTY 219

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BLAST of Csa7G047380 vs. TrEMBL
Match: B9I5K6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s13940g PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 2.2e-66
Identity = 129/231 (55.84%), Postives = 163/231 (70.56%), Query Frame = 1


Query: 6   KPKYVMLSDDHHQASLRPPPYRRNVPRYHSKANGGGGGGVGCCLKCICCCYCFIFFLIFA 65
           +P YVML+ ++  +S+RPPP RRN+PRY S  +   GG    CLKC+C C+CF+  +I  
Sbjct: 8   QPNYVMLNYNN-SSSVRPPPQRRNIPRYQSNHHHSHGG----CLKCVCFCFCFLIVMIIL 67

Query: 66  LFGLGYFLFYYYNPQVPSYKVSDFSVHAFNVKSDFSLYTEFIVIVKADNPNANIGFVYGK 125
           L  +  F++   NP++P Y V+ F V+AFN+  DFSLYTEF V VKA+NPN  I F+YGK
Sbjct: 68  LASVIAFIYMTLNPKMPEYNVASFDVNAFNMAPDFSLYTEFAVTVKANNPNTGISFIYGK 127

Query: 126 DSSVSVMYSKSELCSGQIPNFRQPSKNVTDISILLSGNSEFGSGLQEALMQNRHSGKIPL 185
           +SSV V YS S LCSG++P F QP  N T I ++L G SEFGSGLQE LM NR +GKIPL
Sbjct: 128 ESSVVVAYSDSTLCSGKLPAFHQPGVNTTMIQVVLKGKSEFGSGLQEVLMDNRETGKIPL 187

Query: 186 LVKVKVPVTVVIGSLSLKKVNVFVNCSLVVDKLSPNKKVEILSSNYTYGAS 237
           LV V  PV+VV+ S  L++V V VNCSLVVD LSPNK+V ILSS Y Y  +
Sbjct: 188 LVMVNAPVSVVLKSFPLREVIVNVNCSLVVDNLSPNKRVRILSSEYAYAVN 233

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BLAST of Csa7G047380 vs. TAIR10
Match: AT1G54540.1 (AT1G54540.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 141.4 bits (355), Expect = 7.4e-34
Identity = 67/190 (35.26%), Postives = 109/190 (57.37%), Query Frame = 1


Query: 48  CLKCICCCYCFIFFLIFALFGLGYFLFYYYNPQVPSYKVSDFSVHAFNVKSDFSLYTEFI 107
           C K  C     +   + AL      +++ ++P++PSY+V+   V    +  D SL  EF 
Sbjct: 50  CCKIFCWVLSLLVIALIALAIAVAVVYFVFHPKLPSYEVNSLRVTNLGINLDLSLSAEFK 109

Query: 108 VIVKADNPNANIGFVYGKDSSVSVMYSKSELCSGQIPNFRQPSKNVTDISILLSGNSEFG 167
           V + A NPN  IG  Y K   + V Y K++LC G IP F Q  +NVT +++ L+G +++G
Sbjct: 110 VEITARNPNEKIGIYYEKGGHIGVWYDKTKLCEGPIPRFYQGHRNVTKLNVALTGRAQYG 169

Query: 168 SGLQEALMQNRHSGKIPLLVKVKVPVTVVIGSLSLKKVNVFVNCSLVVDKLSPNKKVEIL 227
           + +  AL Q + +G++PL +KV  PV + +G+L +KK+ +  +C LVVD LS N  + I 
Sbjct: 170 NTVLAALQQQQQTGRVPLDLKVNAPVAIKLGNLKMKKIRILGSCKLVVDSLSTNNNINIK 229

Query: 228 SSNYTYGASL 238
           +S+ ++ A L
Sbjct: 230 ASDCSFKAKL 239

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BLAST of Csa7G047380 vs. TAIR10
Match: AT1G65690.1 (AT1G65690.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 126.7 bits (317), Expect = 1.9e-29
Identity = 64/185 (34.59%), Postives = 99/185 (53.51%), Query Frame = 1


Query: 47  CCLKCICCCYCFIFFLIFALFGLGYFLFYYYNPQVPSYKVSDFSVHAFNVKSDFSLYTEF 106
           CC +C C  +CF+  L+ A+      L+  + P++P Y +    +  F +  D SL T F
Sbjct: 61  CCCRCFCYTFCFLLLLVVAVGASIGILYLVFKPKLPDYSIDRLQLTRFALNQDSSLTTAF 120

Query: 107 IVIVKADNPNANIGFVYGKDSSVSVMYSKSELCSGQIPNFRQPSKNVTDISILLSGNSEF 166
            V + A NPN  IG  Y   S ++V Y + +L +G +P F Q  +N T I + ++G ++ 
Sbjct: 121 NVTITAKNPNEKIGIYYEDGSKITVWYMEHQLSNGSLPKFYQGHENTTVIYVEMTGQTQN 180

Query: 167 GSGLQEAL-MQNRHSGKIPLLVKVKVPVTVVIGSLSLKKVNVFVNCSLVVDKLSPNKKVE 226
            SGL+  L  Q + +G IPL ++V  PV V  G L L +V   V C + VD L+ N  ++
Sbjct: 181 ASGLRTTLEEQQQRTGNIPLRIRVNQPVRVKFGKLKLFEVRFLVRCGVFVDSLATNNVIK 240

Query: 227 ILSSN 231
           I SS+
Sbjct: 241 IQSSS 245

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BLAST of Csa7G047380 vs. TAIR10
Match: AT5G36970.1 (AT5G36970.1 NDR1/HIN1-like 25)

HSP 1 Score: 122.5 bits (306), Expect = 3.6e-28
Identity = 63/192 (32.81%), Postives = 97/192 (50.52%), Query Frame = 1


Query: 43  GGVGCCLKCICCCYCFIFFLIFALFGLGYFLFYYYNPQVPSYKVSDFSVHAFNVKSDFSL 102
           G   C  +C+C     +F LI  +  +   L+  + P+ P Y +    +  F +  D SL
Sbjct: 53  GSRSCWCRCVCYTLLVLFLLIVIVGAIVGILYLVFRPKFPDYNIDRLQLTRFQLNQDLSL 112

Query: 103 YTEFIVIVKADNPNANIGFVYGKDSSVSVMYSKSELCSGQIPNFRQPSKNVTDISILLSG 162
            T F V + A NPN  IG  Y   S +SV+Y ++ + +G +P F Q  +N T I + ++G
Sbjct: 113 STAFNVTITAKNPNEKIGIYYEDGSKISVLYMQTRISNGSLPKFYQGHENTTIILVEMTG 172

Query: 163 NSEFGSGLQEALM-QNRHSGKIPLLVKVKVPVTVVIGSLSLKKVNVFVNCSLVVDKLSPN 222
            ++  + L   L  Q R +G IPL ++V  PV + +G L L KV   V C + VD L+ N
Sbjct: 173 FTQNATSLMTTLQEQQRLTGSIPLRIRVTQPVRIKLGKLKLMKVRFLVRCGVSVDSLAAN 232

Query: 223 KKVEILSSNYTY 234
             + + SSN  Y
Sbjct: 233 SVIRVRSSNCKY 244

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BLAST of Csa7G047380 vs. TAIR10
Match: AT2G27080.1 (AT2G27080.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-25
Identity = 65/224 (29.02%), Postives = 107/224 (47.77%), Query Frame = 1


Query: 3   APPKPKYVMLSDDHHQASLRPPPYRRNVPRYHSKANGGGGGGVGCCLKCICCCYCFIFFL 62
           APP   YV+         + PP       +   K             +C  C +    F+
Sbjct: 31  APPPSTYVIQVPKDQIYRIPPPENAHRFEQLSRKKTNRSN------CRCCFCSFLAAVFI 90

Query: 63  IFALFGLGYFLFYY-YNPQVPSYKVSDFSVHAFNVKSDFSLYTEFIVIVKADNPNANIGF 122
           +  L G+ + + Y  Y P+ P Y +  FSV   N+ S   +   F V V++ N N  IG 
Sbjct: 91  LIVLAGISFAVLYLIYRPEAPKYSIEGFSVSGINLNSTSPISPSFNVTVRSRNGNGKIGV 150

Query: 123 VYGKDSSVSVMYSKSELCSGQIPNFRQPSKNVTDISILLSGNS-EFGSGLQEALMQNRHS 182
            Y K+SSV V Y+  ++ +G +P F QP+KNVT + ++LSG+  +  SG+++ +      
Sbjct: 151 YYEKESSVDVYYNDVDISNGVMPVFYQPAKNVTVVKLVLSGSKIQLTSGMRKEMRNEVSK 210

Query: 183 GKIPLLVKVKVPVTVVIGSLSLKKVNVFVNCSLVVDKLSPNKKV 225
             +P  +K+K PV +  GS+    + V V+C + VDKL+   ++
Sbjct: 211 KTVPFKLKIKAPVKIKFGSVKTWTMIVNVDCDVTVDKLTAPSRI 248

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BLAST of Csa7G047380 vs. TAIR10
Match: AT1G17620.1 (AT1G17620.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-11
Identity = 53/206 (25.73%), Postives = 85/206 (41.26%), Query Frame = 1


Query: 17  HQASLRPPPYRRNVPRYHSKANGGGGGGVGCCLKCICCCYCFIFFLIFALFGLGYFLFYY 76
           ++ + RPP  RR     H++         GCC +C C     I  L+  +      ++  
Sbjct: 38  NRPAYRPPAGRRRTS--HTR---------GCCCRCCCWTIFVIILLLLIVAAASAVVYLI 97

Query: 77  YNPQVPSYKVSDFSVHAFNVKSDFSLYTEFIVIVKADNPNANIGFVYGKDSSVSVMYSKS 136
           Y PQ PS+ VS+  +   N  S   L T   + V A NPN N+GF+Y  D +   +Y  S
Sbjct: 98  YRPQRPSFTVSELKISTLNFTSAVRLTTAISLSVIARNPNKNVGFIY--DVTDITLYKAS 157

Query: 137 E-------LCSGQIPNFRQPSKNVTDISILLSGN----SEFGSGLQEALMQNRHSGKIPL 196
                   +  G I  F    KN T +   +        E  +G  +  ++ + +  I +
Sbjct: 158 TGGDDDVVIGKGTIAAFSHGKKNTTTLRSTIGSPPDELDEISAGKLKGDLKAKKAVAIKI 217

Query: 197 LVKVKVPVTVVIGSLSLKKVNVFVNC 212
           ++  KV V   +G+L   K  + V C
Sbjct: 218 VLNSKVKVK--MGALKTPKSGIRVTC 228

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BLAST of Csa7G047380 vs. NCBI nr
Match: gi|778724056|ref|XP_011658744.1| (PREDICTED: uncharacterized protein LOC105436081 [Cucumis sativus])

HSP 1 Score: 488.4 bits (1256), Expect = 7.0e-135
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 1


Query: 1   MEAPPKPKYVMLSDDHHQASLRPPPYRRNVPRYHSKANGGGGGGVGCCLKCICCCYCFIF 60
           MEAPPKPKYVMLSDDHHQASLRPPPYRRNVPRYHSKANGGGGGGVGCCLKCICCCYCFIF
Sbjct: 1   MEAPPKPKYVMLSDDHHQASLRPPPYRRNVPRYHSKANGGGGGGVGCCLKCICCCYCFIF 60

Query: 61  FLIFALFGLGYFLFYYYNPQVPSYKVSDFSVHAFNVKSDFSLYTEFIVIVKADNPNANIG 120
           FLIFALFGLGYFLFYYYNPQVPSYKVSDFSVHAFNVKSDFSLYTEFIVIVKADNPNANIG
Sbjct: 61  FLIFALFGLGYFLFYYYNPQVPSYKVSDFSVHAFNVKSDFSLYTEFIVIVKADNPNANIG 120

Query: 121 FVYGKDSSVSVMYSKSELCSGQIPNFRQPSKNVTDISILLSGNSEFGSGLQEALMQNRHS 180
           FVYGKDSSVSVMYSKSELCSGQIPNFRQPSKNVTDISILLSGNSEFGSGLQEALMQNRHS
Sbjct: 121 FVYGKDSSVSVMYSKSELCSGQIPNFRQPSKNVTDISILLSGNSEFGSGLQEALMQNRHS 180

Query: 181 GKIPLLVKVKVPVTVVIGSLSLKKVNVFVNCSLVVDKLSPNKKVEILSSNYTYGASL 238
           GKIPLLVKVKVPVTVVIGSLSLKKVNVFVNCSLVVDKLSPNKKVEILSSNYTYGASL
Sbjct: 181 GKIPLLVKVKVPVTVVIGSLSLKKVNVFVNCSLVVDKLSPNKKVEILSSNYTYGASL 237

[Close]

BLAST of Csa7G047380 vs. NCBI nr
Match: gi|659110639|ref|XP_008455332.1| (PREDICTED: uncharacterized protein LOC103495521 [Cucumis melo])

HSP 1 Score: 446.4 bits (1147), Expect = 3.1e-122
Identity = 217/237 (91.56%), Postives = 227/237 (95.78%), Query Frame = 1


Query: 1   MEAPPKPKYVMLSDDHHQASLRPPPYRRNVPRYHSKAN-GGGGGGVGCCLKCICCCYCFI 60
           MEAPPKPKYVMLSD+HHQ SLRPPPYRRNVPRY SKA+ GGGGGGVGCCLKCICC YCFI
Sbjct: 1   MEAPPKPKYVMLSDNHHQTSLRPPPYRRNVPRYQSKAHGGGGGGGVGCCLKCICCFYCFI 60

Query: 61  FFLIFALFGLGYFLFYYYNPQVPSYKVSDFSVHAFNVKSDFSLYTEFIVIVKADNPNANI 120
           FFLIFALFG GYFL+YYY+PQ+PSYKVS+FSVHAFNVK DFSLYTEFIVIVKADNPN NI
Sbjct: 61  FFLIFALFGFGYFLYYYYDPQIPSYKVSNFSVHAFNVKPDFSLYTEFIVIVKADNPNQNI 120

Query: 121 GFVYGKDSSVSVMYSKSELCSGQIPNFRQPSKNVTDISILLSGNSEFGSGLQEALMQNRH 180
           GF+YGK+SSVSVMYSKSELCSG+IPNFRQPSKNVTDISILLSGNSEFGSGLQEALMQNRH
Sbjct: 121 GFIYGKNSSVSVMYSKSELCSGKIPNFRQPSKNVTDISILLSGNSEFGSGLQEALMQNRH 180

Query: 181 SGKIPLLVKVKVPVTVVIGSLSLKKVNVFVNCSLVVDKLSPNKKVEILSSNYTYGAS 237
           SGKIPLLV+VKVPVTVVIGSLSLKKVNV VNCSLVVD LSPNKKV ILSSNYTYGAS
Sbjct: 181 SGKIPLLVEVKVPVTVVIGSLSLKKVNVLVNCSLVVDNLSPNKKVGILSSNYTYGAS 237

[Close]

BLAST of Csa7G047380 vs. NCBI nr
Match: gi|255553827|ref|XP_002517954.1| (PREDICTED: uncharacterized protein LOC8262102 [Ricinus communis])

HSP 1 Score: 288.5 bits (737), Expect = 1.1e-74
Identity = 142/239 (59.41%), Postives = 174/239 (72.80%), Query Frame = 1


Query: 1   MEAPP--KPKYVMLSDDHHQASLRPPPYRRNVPRYHSKANGGGGGGVGCCLKCICCCYCF 60
           ME PP  +PKYVML+ +H   +LRPPP RRN+PRYHS  NG  GG    CL+C+CCC+CF
Sbjct: 1   MENPPPYQPKYVMLNSNH-ATNLRPPPQRRNIPRYHSNNNGKSGGNG--CLRCLCCCFCF 60

Query: 61  IFFLIFALFGLGYFLFYYYNPQVPSYKVSDFSVHAFNVKSDFSLYTEFIVIVKADNPNAN 120
              L   L    + L+    P++P Y V  F VHAFNV+ DFSLYTEF+V VK+DNPN +
Sbjct: 61  WLLLFIFLAAALFALYSALQPEIPHYNVDRFDVHAFNVQPDFSLYTEFVVTVKSDNPNMH 120

Query: 121 IGFVYGKDSSVSVMYSKSELCSGQIPNFRQPSKNVTDISILLSGNSEFGSGLQEALMQNR 180
           IGF YGK+SSV V Y  S LCSG IP F QP  N++ I I+L G SEFGSGLQEALMQNR
Sbjct: 121 IGFDYGKESSVVVTYRDSPLCSGSIPTFHQPHHNISLIPIVLKGKSEFGSGLQEALMQNR 180

Query: 181 HSGKIPLLVKVKVPVTVVIGSLSLKKVNVFVNCSLVVDKLSPNKKVEILSSNYTYGASL 238
           ++G+IPLLV+VK PV++V+  L L++V V +NCSLVVD LSPNKK +ILSS+Y YG  L
Sbjct: 181 NTGRIPLLVEVKAPVSIVVQELPLRQVTVLINCSLVVDNLSPNKKAKILSSSYQYGVEL 236

[Close]

BLAST of Csa7G047380 vs. NCBI nr
Match: gi|702501996|ref|XP_010038643.1| (PREDICTED: uncharacterized protein LOC104427219 [Eucalyptus grandis])

HSP 1 Score: 285.0 bits (728), Expect = 1.2e-73
Identity = 139/232 (59.91%), Postives = 173/232 (74.57%), Query Frame = 1


Query: 1   MEAPPK--PKYVMLSDDHHQASLRPPPYRRNVPRYHSKANGGGGGGVGCCLKCICCCYCF 60
           ME PP   PKYVML D   Q S+RPPPYRRN+PRYHS  +  GGG   CC++CICC  C 
Sbjct: 1   MEPPPPYPPKYVMLQDS--QGSIRPPPYRRNIPRYHSNHHKSGGGS--CCMRCICCFCCS 60

Query: 61  IFFLIFALFGLGYFLFYYYNPQVPSYKVSDFSVHAFNVKSDFSLYTEFIVIVKADNPNAN 120
           +F LIF +  L ++ +  + P+VPSY V  F+ +AFN++ DFSLYTEF+V VKADNPN+N
Sbjct: 61  LFILIFVVATLAFYFYAVFQPRVPSYTVDSFATNAFNMQPDFSLYTEFVVTVKADNPNSN 120

Query: 121 IGFVYGKDSSVSVMYSKSELCSGQIPNFRQPSKNVTDISILLSGNSEFGSGLQEALMQNR 180
           IGF YGKDSSV V Y  S LC+GQ+P F Q  KN+T I +LL G SEFGSGLQEALM+NR
Sbjct: 121 IGFNYGKDSSVMVAYQDSTLCNGQLPAFHQGHKNITMIKVLLKGKSEFGSGLQEALMENR 180

Query: 181 HSGKIPLLVKVKVPVTVVIGSLSLKKVNVFVNCSLVVDKLSPNKKVEILSSN 231
           H+G+IPL V VKVPV +VIG+  L++  V V C+LVVD LSPNKK +I+S++
Sbjct: 181 HTGRIPLNVIVKVPVGIVIGTFPLRRFTVRVICALVVDNLSPNKKTQIVSNS 228

[Close]

BLAST of Csa7G047380 vs. NCBI nr
Match: gi|731409878|ref|XP_010657352.1| (PREDICTED: uncharacterized protein LOC104880896 [Vitis vinifera])

HSP 1 Score: 281.2 bits (718), Expect = 1.7e-72
Identity = 133/227 (58.59%), Postives = 171/227 (75.33%), Query Frame = 1


Query: 5   PKPKYVMLSDDHHQASLRPPPYRRNVPRYHSKANGGGGGGVGCCLKCICCCYCFIFFLIF 64
           P  KY ML     Q+SL PPPYRRNVPRYHS  +  GGG    CLKCICCCYCF+  LIF
Sbjct: 6   PPQKYAMLEQ---QSSLHPPPYRRNVPRYHSGHHKSGGG----CLKCICCCYCFLIILIF 65

Query: 65  ALFGLGYFLFYYYNPQVPSYKVSDFSVHAFNVKSDFSLYTEFIVIVKADNPNANIGFVYG 124
            L G+ ++ +  + P+VPSY+V    V AF+++ DFSL TEF+V VKADNPN +IGF+YG
Sbjct: 66  LLAGITFYFYTVFQPKVPSYQVEHLDVKAFDMQMDFSLNTEFLVTVKADNPNQHIGFIYG 125

Query: 125 KDSSVSVMYSKSELCSGQIPNFRQPSKNVTDISILLSGNSEFGSGLQEALMQNRHSGKIP 184
           KDSS  VMYS S+LCSG++P F+Q  KN+T + +++ G SEFGSGLQ+AL++NR +GKIP
Sbjct: 126 KDSSAIVMYSDSQLCSGRLPAFQQGPKNITLMKVVMKGKSEFGSGLQQALIENRENGKIP 185

Query: 185 LLVKVKVPVTVVIGSLSLKKVNVFVNCSLVVDKLSPNKKVEILSSNY 232
           LL+KV VPV VV+GS+ +++  V VNCSLV+D L+P KKV ILS+ Y
Sbjct: 186 LLIKVVVPVRVVVGSVQMRQFKVLVNCSLVIDNLAPKKKVRILSTKY 225

The following BLAST results are available for this feature:

BLAST of Csa7G047380 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NHL3_ARATH	6.2e-06	24.49	NDR1/HIN1-Like protein 3 OS=Arabidopsis thaliana GN=NHL3 PE=1 SV=1	[more]

BLAST of Csa7G047380 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2B4_CUCSA	4.9e-135	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G047380 PE=4 SV=1	[more]
B9RW35_RICCO	7.4e-75	59.41	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1175710 PE=4 SV=1	[more]
A0A059A096_EUCGR	8.2e-74	59.91	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00959 PE=4 SV=1	[more]
U5FEV5_POPTR	8.8e-68	57.27	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s13360g PE=4 SV=1	[more]
B9I5K6_POPTR	2.2e-66	55.84	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s13940g PE=4 SV=1	[more]

BLAST of Csa7G047380 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G54540.1	7.4e-34	35.26	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT1G65690.1	1.9e-29	34.59	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT5G36970.1	3.6e-28	32.81	NDR1/HIN1-like 25	[more]
AT2G27080.1	1.3e-25	29.02	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT1G17620.1	1.4e-11	25.73	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]

BLAST of Csa7G047380 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778724056\|ref\|XP_011658744.1\|	7.0e-135	100.00	PREDICTED: uncharacterized protein LOC105436081 [Cucumis sativus]	[more]
gi\|659110639\|ref\|XP_008455332.1\|	3.1e-122	91.56	PREDICTED: uncharacterized protein LOC103495521 [Cucumis melo]	[more]
gi\|255553827\|ref\|XP_002517954.1\|	1.1e-74	59.41	PREDICTED: uncharacterized protein LOC8262102 [Ricinus communis]	[more]
gi\|702501996\|ref\|XP_010038643.1\|	1.2e-73	59.91	PREDICTED: uncharacterized protein LOC104427219 [Eucalyptus grandis]	[more]
gi\|731409878\|ref\|XP_010657352.1\|	1.7e-72	58.59	PREDICTED: uncharacterized protein LOC104880896 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004864	LEA_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0015031	protein transport
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU135011	cucumber EST collection version 3.0	transcribed_cluster
CU174992	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G047380.1	Csa7G047380.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU135011	CU135011	transcribed_cluster
CU174992	CU174992	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA-14	PFAM	PF03168	LEA_2	coord: 110..211 score: 1.
None	No IPR available	PANTHER	PTHR31852	FAMILY NOT NAMED	coord: 20..225 score: 1.7
None	No IPR available	PANTHER	PTHR31852:SF26	SUBFAMILY NOT NAMED	coord: 20..225 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa7G047380	Cla007744	Watermelon (97103) v1	cuwmB596
Csa7G047380	MELO3C018746	Melon (DHL92) v3.5.1	cumeB530
Csa7G047380	ClCG02G001110	Watermelon (Charleston Gray)	cuwcgB546
Csa7G047380	Lsi11G015400	Bottle gourd (USVL1VR-Ls)	culsiB494
Csa7G047380	MELO3C018746.2	Melon (DHL92) v3.6.1	cumedB509
Csa7G047380	Cla97C02G027530	Watermelon (97103) v2	cuwmbB529
Csa7G047380	Bhi05G001598	Wax gourd	cuwgoB662
Csa7G047380	CSPI07G04520	Wild cucumber (PI 183967)	cpicuB354
Csa7G047380	Cucsa.147780	Cucumber (Gy14) v1	cgycuB215
Csa7G047380	CmaCh19G009810	Cucurbita maxima (Rimu)	cmacuB527
Csa7G047380	CmaCh11G018710	Cucurbita maxima (Rimu)	cmacuB147
Csa7G047380	CmoCh11G019480	Cucurbita moschata (Rifu)	cmocuB132
Csa7G047380	CmoCh19G010160	Cucurbita moschata (Rifu)	cmocuB518
Csa7G047380	Cp4.1LG04g03100	Cucurbita pepo (Zucchini)	cpecuB690
Csa7G047380	Cp4.1LG15g07910	Cucurbita pepo (Zucchini)	cpecuB257
Csa7G047380	CsGy7G004120	Cucumber (Gy14) v2	cgybcuB324
Csa7G047380	Carg19116	Silver-seed gourd	carcuB0739
Csa7G047380	Carg19230	Silver-seed gourd	carcuB0891

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G047380	Wax gourd	cuwgoB683
Csa7G047380	Cucumber (Chinese Long) v2	cucuB174
Csa7G047380	Cucumber (Gy14) v1	cgycuB028
Csa7G047380	Cucumber (Gy14) v1	cgycuB158
Csa7G047380	Cucumber (Gy14) v1	cgycuB173
Csa7G047380	Cucurbita maxima (Rimu)	cmacuB231
Csa7G047380	Cucurbita maxima (Rimu)	cmacuB426
Csa7G047380	Cucurbita maxima (Rimu)	cmacuB643
Csa7G047380	Cucurbita moschata (Rifu)	cmocuB415
Csa7G047380	Cucurbita moschata (Rifu)	cmocuB632
Csa7G047380	Melon (DHL92) v3.5.1	cumeB514
Csa7G047380	Melon (DHL92) v3.5.1	cumeB564
Csa7G047380	Watermelon (Charleston Gray)	cuwcgB537
Csa7G047380	Watermelon (Charleston Gray)	cuwcgB541
Csa7G047380	Watermelon (97103) v1	cuwmB593
Csa7G047380	Watermelon (97103) v1	cuwmB598
Csa7G047380	Cucurbita pepo (Zucchini)	cpecuB765
Csa7G047380	Bottle gourd (USVL1VR-Ls)	culsiB490
Csa7G047380	Bottle gourd (USVL1VR-Ls)	culsiB502
Csa7G047380	Cucumber (Gy14) v2	cgybcuB289
Csa7G047380	Cucumber (Gy14) v2	cgybcuB292
Csa7G047380	Melon (DHL92) v3.6.1	cumedB494
Csa7G047380	Melon (DHL92) v3.6.1	cumedB541
Csa7G047380	Silver-seed gourd	carcuB0032
Csa7G047380	Silver-seed gourd	carcuB0170
Csa7G047380	Watermelon (97103) v2	cuwmbB514
Csa7G047380	Watermelon (97103) v2	cuwmbB523