Carg16200 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16200
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	COPII coat assembly protein SEC16, putative
Location	Cucurbita_argyrosperma_scaffold_077 : 2814 .. 5258 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGACATCTCCGCTCAAAAACCATACCCACCACCGCCGAATCTTCGCCGAAGAAACTCCATCGCGGTGCCCGTCGTCGTGCCATCAAAACTAAACCTTTTCGCCTTCGCCGCCACCAAGTCCTCTGGCGGCTCAGCTGCATCGCCGCCATTGGCTTTTGAGCTCTTCCCGATTAAATCCTCCTCCCACTCCCTTACCTACACTTCTCTCAGAGACATTTTGCCATCTCCGACTTCCATGAGCTCCCCCACCGCCGCCTCTGCAGCGAATTCGGGCTTTGAGATCTCGATCCGCAACCGCCTCGTGAAGCAAGCGGCTTGGGCGTATCTTCAACCCATGTCTTCCTTATCAAGTTTATGCAAAACTGTGCCTCACACTATTGAGGACATATTCTATTTATATTGGCAAAAGATTAACTAATAGATCCGATTTCATAGGAAACTAACGAAGTAAGCCTATTCTTATGGCATGACTAACTTCAAGCTATTCTAATGGATTGACCAATTCTAACAGTCCCCTTCAATCCCAACAAGTCTTGTACATGTTGAGATTGTTACAATGTGTGTAGTAAAAGGAGTTTTAGACAGTGGTTTTGTCAGGATATCAGCTACTTGATCACTTGATGAAATGGAACCGAACTTCCATTGCTTTACGTGCTACTTGTTCTCGAACAAAATGAAAATCAACTTCAATATGTTTCGTTCTAGCATGAAATACTGGATTTGAAGTTAAATATGTAGCTCCGAGGTTGTCACACCAGAGGCGAGGAGCCTTTGATTGATACAACGCCCAGTTCCTTCAGTAATGACTTGATCCAAATCATTTCTGCAGTAAGATTCGCAATGGCCTTGTATTCTGCTTCGGTGCTTGATCTTGACACTGTAGCCTGTTTTCTGGAACTCCATGAGATTAGATTTGCTCCAAGAAATACAGCAAAGCCGCTAGTTGAACGTCGATCATCGGGACAACCAGCCCAATCAGCATCAGAAAACCCCGACAAACATCATGGTTGATTTCTGAATTTTCACTCCTAATGCTAGTGTGCCTTTAACATAACGAAGAATTCTCTTCACAGCACCCCAATGAGCATCAGTAGGTGTATGAAGATATTGACACACTTTTATTGACAGCAAATGCCAAATCAGGCCTAGTCATTGTCAAATATTGTAGTGCTCCCACTGTACTTCTTGTATTTGAATTGTTCTTCAGCTGATAAGGGTATTCCTTGTTCTCTGAATAATTTTTCAGCAGAACCCATTGGTGTAGACATAGGTTTGCATTTTTCCATGTTTACCTCTTTTCAACAAAAATCTAAGGCATATCGTCTCTGTGACAGTATGATAACCATCTCGTGTTTTCTTGACTTCAATACCCAGAAATCTACTCAGAAGACCACCCAAATCTTTTTACTGCAAAATCTATTTTCAATTTCTGAATCAACTTTCGGTTGCTTGATCAGAGGAGCTCACAATAATATATATCATCAACATAGATGAGCATGATAGATAGTTATCTCTCTGTTTTTGAGAATAAAAAGATGATGAATCAGCTACTGAAAGCCTTGAAGCCTAACTCAATAAGTTTCCAGTCAACCTTTATTGATGCCAAAGCTTTTGGGGCTTGTTCAGGCCATTAAAGGCTTTCTTGAGCTTGCATATGATAATTCTTTGGTTGCTGAGTCTTAAATCCTAAGGTTGGTTGCGCATGTACACTTTTTCCTCTTTCAGAATTCATGCAAAAATGGCCATTTGATATCAAACTGTCTCATATTCCAGCCCTGGTTTACTGCCTAGCGAGAAAGAATGACCCTGCATTGTTTTTGGAACCCGTTTTTGATTACCCCCCCCCCAACCCCAGGGCTAAAAGTAATCAGTGTAATCAACACCAAAATCTTTGCCTAGCAACATCGTGCCTTTGCAACCTAATCTTTGCTTTTTAATCGCTTCAACTGACCATTCTGCTTTTCTTTTCACTTTATTACACACCCATTACTATCCAATGAGATTTATTCCAGGTTTGGGTGGAACTAGATCCCAAGTTGCCATTCCGTTTATAGCGCTGGAGAGCTCACATTCATTTAGCTCCTCTCCATTTGGAATGTTATTGCATGGCTTCCTGCGCAGGTTTCGGAGGTCAGTTAGCCATCTCTATTATTCTGGAGTTGTATATTACAGCGCTTGCCGAATTTTCTTGAGGTTTACCTGAAGATCTGATAGTTTCCCATCATGGTTGAAATTGTTTAGCTTGACAATGTATTTCTTCAACCTTGTTCGCATTGGATGTTACTAGCTTCTTCAGGTTGGTGTGGATCAGACACATTTCATGAGTTTGGTTTTGAGCATTGACTCGAATGCTCTGCAGCTTCATATTCTGCAATTTCTCTCTGAACTCTGTGTATTATCTGCAGAAGATAAGCTGACACCAGACAAAGTTGTCGACTAG

mRNA sequence

ATGGATGACATCTCCGCTCAAAAACCATACCCACCACCGCCGAATCTTCGCCGAAGAAACTCCATCGCGGTGCCCGTCGTCGTGCCATCAAAACTAAACCTTTTCGCCTTCGCCGCCACCAAGTCCTCTGGCGGCTCAGCTGCATCGCCGCCATTGGCTTTTGAGCTCTTCCCGATTAAATCCTCCTCCCACTCCCTTACCTACACTTCTCTCAGAGACATTTTGCCATCTCCGACTTCCATGAGCTCCCCCACCGCCGCCTCTGCAGCGAATTCGGGCTTTGAGATCTCGATCCGCAACCGCCTCGTGAAGCAAGCGGCTTGGGCGTATCTTCAACCCATGTCTTCCTTATCAAGTTTATGCAAAACTCTCCGAGGTTGTCACACCAGAGGCGAGGAGCCTTTGATTGATACAACGCCCAGTTCCTTCAGTAATGACTTGATCCAAATCATTTCTGCAGTAAGATTCGCAATGGCCTTGTATTCTGCTTCGGTGCTTGATCTTGACACTGTAGCCTGTTTTCTGGAACTCCATGAGATTAGATTTGCTCCAAGAAATACAGCAAAGCCGCTAGTTGAACGTCGATCATCGGGACAACCAGCCCAATCAGCATCAGAAAACCCCGACAAACATCATGCTGATAAGGGTATTCCTTGTTCTCTGAATAATTTTTCAGCAGAACCCATTGGTGTAGACATAGGTTTGGGTGGAACTAGATCCCAAGTTGCCATTCCGTTTATAGCGCTGGAGAGCTCACATTCATTTAGCTCCTCTCCATTTGGAATGTTATTGCATGGCTTCCTGCGCAGGTTTCGGAGGTCAGTTAGCCATCTCTATTATTCTGGAGTTGTTGGTGTGGATCAGACACATTTCATGAGTTTGGTTTTGAGCATTGACTCGAATGCTCTGCAGCTTCATATTCTGCAATTTCTCTCTGAACTCTGTGTATTATCTGCAGAAGATAAGCTGACACCAGACAAAGTTGTCGACTAG

Coding sequence (CDS)

ATGGATGACATCTCCGCTCAAAAACCATACCCACCACCGCCGAATCTTCGCCGAAGAAACTCCATCGCGGTGCCCGTCGTCGTGCCATCAAAACTAAACCTTTTCGCCTTCGCCGCCACCAAGTCCTCTGGCGGCTCAGCTGCATCGCCGCCATTGGCTTTTGAGCTCTTCCCGATTAAATCCTCCTCCCACTCCCTTACCTACACTTCTCTCAGAGACATTTTGCCATCTCCGACTTCCATGAGCTCCCCCACCGCCGCCTCTGCAGCGAATTCGGGCTTTGAGATCTCGATCCGCAACCGCCTCGTGAAGCAAGCGGCTTGGGCGTATCTTCAACCCATGTCTTCCTTATCAAGTTTATGCAAAACTCTCCGAGGTTGTCACACCAGAGGCGAGGAGCCTTTGATTGATACAACGCCCAGTTCCTTCAGTAATGACTTGATCCAAATCATTTCTGCAGTAAGATTCGCAATGGCCTTGTATTCTGCTTCGGTGCTTGATCTTGACACTGTAGCCTGTTTTCTGGAACTCCATGAGATTAGATTTGCTCCAAGAAATACAGCAAAGCCGCTAGTTGAACGTCGATCATCGGGACAACCAGCCCAATCAGCATCAGAAAACCCCGACAAACATCATGCTGATAAGGGTATTCCTTGTTCTCTGAATAATTTTTCAGCAGAACCCATTGGTGTAGACATAGGTTTGGGTGGAACTAGATCCCAAGTTGCCATTCCGTTTATAGCGCTGGAGAGCTCACATTCATTTAGCTCCTCTCCATTTGGAATGTTATTGCATGGCTTCCTGCGCAGGTTTCGGAGGTCAGTTAGCCATCTCTATTATTCTGGAGTTGTTGGTGTGGATCAGACACATTTCATGAGTTTGGTTTTGAGCATTGACTCGAATGCTCTGCAGCTTCATATTCTGCAATTTCTCTCTGAACTCTGTGTATTATCTGCAGAAGATAAGCTGACACCAGACAAAGTTGTCGACTAG

Protein sequence

MDDISAQKPYPPPPNLRRRNSIAVPVVVPSKLNLFAFAATKSSGGSAASPPLAFELFPIKSSSHSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSSLSSLCKTLRGCHTRGEEPLIDTTPSSFSNDLIQIISAVRFAMALYSASVLDLDTVACFLELHEIRFAPRNTAKPLVERRSSGQPAQSASENPDKHHADKGIPCSLNNFSAEPIGVDIGLGGTRSQVAIPFIALESSHSFSSSPFGMLLHGFLRRFRRSVSHLYYSGVVGVDQTHFMSLVLSIDSNALQLHILQFLSELCVLSAEDKLTPDKVVD

Homology

[Close]

BLAST of Carg16200 vs. NCBI nr
Match: XP_022957964.1 (uncharacterized protein LOC111459312 [Cucurbita moschata])

HSP 1 Score: 221.5 bits (563), Expect = 4.3e-54
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MDDISAQKPYPPPPNLRRRNSIAVPVVVPSKLNLFAFAATKSSGGSAASPPLAFELFPIK 60
           MDDISAQKPYPPPPNLRRRNSIAVPVVVPSKLNLFAFAATKSSGGSAASPPLAFELFPIK
Sbjct: 1   MDDISAQKPYPPPPNLRRRNSIAVPVVVPSKLNLFAFAATKSSGGSAASPPLAFELFPIK 60

Query: 61  SSSHSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSS 117
           SSSHSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSS
Sbjct: 61  SSSHSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSS 116

[Close]

BLAST of Carg16200 vs. NCBI nr
Match: XP_023005655.1 (uncharacterized protein LOC111498593 [Cucurbita maxima])

HSP 1 Score: 219.9 bits (559), Expect = 1.3e-53
Identity = 114/116 (98.28%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MDDISAQKPYPPPPNLRRRNSIAVPVVVPSKLNLFAFAATKSSGGSAASPPLAFELFPIK 60
           MDDISAQKPYPPPPNLRRRNSIAVPVVVPSKLNLFAF+ATKSSGGSAASPPLAFELFP+K
Sbjct: 1   MDDISAQKPYPPPPNLRRRNSIAVPVVVPSKLNLFAFSATKSSGGSAASPPLAFELFPVK 60

Query: 61  SSSHSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSS 117
           SSSHSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSS
Sbjct: 61  SSSHSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSS 116

[Close]

BLAST of Carg16200 vs. NCBI nr
Match: XP_023539526.1 (uncharacterized protein LOC111800166 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 213.8 bits (543), Expect = 9.0e-52
Identity = 113/116 (97.41%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 1   MDDISAQKPYPPPPNLRRRNSIAVPVVVPSKLNLFAFAATKSSGGSAASPPLAFELFPIK 60
           MDDISA KP+PPPPNLRRRNSIAVPVVVPSKLNLFAFAATKSSGGSAASPPLAFELFPIK
Sbjct: 1   MDDISALKPHPPPPNLRRRNSIAVPVVVPSKLNLFAFAATKSSGGSAASPPLAFELFPIK 60

Query: 61  SSSHSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSS 117
           SSSHSLTYTSLRDILPS TSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSS
Sbjct: 61  SSSHSLTYTSLRDILPSSTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSS 116

[Close]

BLAST of Carg16200 vs. NCBI nr
Match: XP_023526406.1 (uncharacterized protein LOC111789917 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 158.7 bits (400), Expect = 3.4e-35
Identity = 96/124 (77.42%), Postives = 101/124 (81.45%), Query Frame = 0


Query: 1   MDDISAQKPYPPPPNLRRRNSIAVPVVVPSKLNLFAFAATKSSGGSAASP--PLAFELFP 60
           MD  SA KP PP PNLRRRNSI VPVVVPSKLNL   AATKSS G A+SP  PLAFEL P
Sbjct: 1   MDQTSALKPDPPLPNLRRRNSITVPVVVPSKLNL--LAATKSSRGVASSPPLPLAFELVP 60

Query: 61  IKS---SSHSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMS 120
           IKS   SS SL YTSLRDILPS T++ SPTAASAANSG+EISIRNRLVKQAAWAYLQPM+
Sbjct: 61  IKSSSPSSPSLAYTSLRDILPSATAIYSPTAASAANSGYEISIRNRLVKQAAWAYLQPMA 120

[Close]

BLAST of Carg16200 vs. NCBI nr
Match: XP_022935679.1 (uncharacterized protein LOC111442465 [Cucurbita moschata])

HSP 1 Score: 157.5 bits (397), Expect = 7.6e-35
Identity = 95/123 (77.24%), Postives = 101/123 (82.11%), Query Frame = 0


Query: 1   MDDISAQKPYPPPPNLRRRNSIAVPVVVPSKLNLFAFAATKSSGGSAASP--PLAFELFP 60
           MD  SA KP PP PNLRRRNSI VPVVVPSKL+L   AATKSS G A+SP  PLAFEL P
Sbjct: 1   MDQTSALKPDPPLPNLRRRNSITVPVVVPSKLSL--LAATKSSRGVASSPQLPLAFELVP 60

Query: 61  IKSSSH--SLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSS 120
           IKSSS   SL YTSLRDILPS T++ SPTAASAANSG+EISIRNRLVKQAAWAYLQPM+S
Sbjct: 61  IKSSSSSPSLAYTSLRDILPSATAIYSPTAASAANSGYEISIRNRLVKQAAWAYLQPMAS 120

[Close]

BLAST of Carg16200 vs. TAIR10
Match: AT5G06280.1 (unknown protein)

HSP 1 Score: 52.8 bits (125), Expect = 4.8e-07
Identity = 48/120 (40.00%), Postives = 62/120 (51.67%), Query Frame = 0


Query: 12  PPPNLRRRNSIAVPVVVPSKLNLFAFAATKSSGGSAASPPLAF--ELFPIKSSSHSLTYT 71
           P   LRR  SI+         N+      +     A++PP +F  EL  +K SS  + YT
Sbjct: 9   PATQLRRTKSIS---------NMTTLTPPEVPFDIASTPPSSFDYELISVKPSSF-VAYT 68

Query: 72  SLRDILPSPTSMS----------SPTAASAANSGFEISIRNRLVKQAAWAYLQPMSSLSS 120
           SLRDI+ SP + S          SP  ++AA    +ISIRNRLVKQAA +YLQP    SS
Sbjct: 69  SLRDIISSPINSSLNLPSINGSCSPVISTAAG---DISIRNRLVKQAALSYLQPTVLTSS 115

[Close]

BLAST of Carg16200 vs. TAIR10
Match: AT3G52520.1 (unknown protein)

HSP 1 Score: 50.8 bits (120), Expect = 1.8e-06
Identity = 39/79 (49.37%), Postives = 48/79 (60.76%), Query Frame = 0


Query: 47  AASPPLAFELFPIKSSSHS--LTYTSLRDILP-SPTSMSSPT---AASAANSGFEISIRN 106
           A S  L  EL  +  SS      YTSL+DILP S T++ SP    A ++A SG  I+IRN
Sbjct: 18  AVSQTLDLELVSVNKSSEDPLPCYTSLKDILPSSSTTVDSPAISFAVASAVSGPTITIRN 77

Query: 107 RLVKQAAWAYLQPMSSLSS 120
           RLVKQAA +YLQP +   S
Sbjct: 78  RLVKQAACSYLQPSTPTPS 96

[Close]

BLAST of Carg16200 vs. TrEMBL
Match: tr|A0A0A0LE45|A0A0A0LE45_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778400 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.5e-34
Identity = 94/122 (77.05%), Postives = 98/122 (80.33%), Query Frame = 0


Query: 1   MDDISAQKPYPPPPNLRRRNSIAVPVVVPSKLNLFAFAATKSSGGSAASP--PLAFELFP 60
           MDD SA KP  P  NLRRRNSI VPV VPSKLNL   AATKSS G+ ASP  PLAFEL P
Sbjct: 1   MDDTSALKPDSPFSNLRRRNSITVPVAVPSKLNL--LAATKSSRGAEASPRLPLAFELVP 60

Query: 61  IKSSSH----SLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPM 117
           IKSSS     SL YTSL+DILPSPT+ SSPTA SAANSG+EISIRNRLVKQAAWAYLQPM
Sbjct: 61  IKSSSSESSPSLAYTSLKDILPSPTASSSPTAVSAANSGYEISIRNRLVKQAAWAYLQPM 120

[Close]

BLAST of Carg16200 vs. TrEMBL
Match: tr|A0A1S3B6B1|A0A1S3B6B1_CUCME (uncharacterized protein LOC103486660 OS=Cucumis melo OX=3656 GN=LOC103486660 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 3.3e-34
Identity = 94/122 (77.05%), Postives = 98/122 (80.33%), Query Frame = 0


Query: 1   MDDISAQKPYPPPPNLRRRNSIAVPVVVPSKLNLFAFAATKSSGGSAASP--PLAFELFP 60
           MD+ SA KP PP  NLRRRNSI VPV VPSKLNL   AATK S G+ ASP  PLAFEL P
Sbjct: 1   MDETSALKPDPPFSNLRRRNSITVPVAVPSKLNL--LAATKPSRGAEASPPLPLAFELVP 60

Query: 61  IKSSSH----SLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPM 117
           IKSSS     SL YTSLRDILPS T+ SSPTAASAANSG+EISIRNRLVKQAAWAYLQPM
Sbjct: 61  IKSSSSGSSPSLAYTSLRDILPSNTASSSPTAASAANSGYEISIRNRLVKQAAWAYLQPM 120

[Close]

BLAST of Carg16200 vs. TrEMBL
Match: tr|A0A2P5FHZ6|A0A2P5FHZ6_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_068630 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.3e-19
Identity = 71/122 (58.20%), Postives = 82/122 (67.21%), Query Frame = 0


Query: 12  PPPNLRRRNSIAVPVVVPSKLNLFAFAATKS-------SGGSAAS----PPLAFELFPIK 71
           P  NLRRRNSIA   VVP++L+L    A            GSAAS    P L FEL   K
Sbjct: 8   PSSNLRRRNSIATS-VVPTRLSLPTVTAKPRHSSSFPIQNGSAASRPPPPSLDFELISFK 67

Query: 72  SSSHSLTYTSLRDILPSPTS---MSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSSL 120
           +S  SL+YTSL+D++PS  S   ++SPTAASA NSG+EISIRNRLVKQAAWAYLQPMSS 
Sbjct: 68  TSPSSLSYTSLKDLIPSSPSGAGINSPTAASAVNSGYEISIRNRLVKQAAWAYLQPMSSS 127

[Close]

BLAST of Carg16200 vs. TrEMBL
Match: tr|A0A1R3IIV5|A0A1R3IIV5_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_11929 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.5e-18
Identity = 68/121 (56.20%), Postives = 86/121 (71.07%), Query Frame = 0


Query: 1   MDDISAQKPYPPPPNLRRRNSIAVPVVVPSKLNLFA---FAATKSSGGSAASPPLAFELF 60
           MDD + Q   P    LRRRNSI+ PV +P+KL+L        + S    +ASPPL  EL 
Sbjct: 1   MDDEAEQ---PSLSTLRRRNSISSPVQLPTKLSLLTPNPLETSNSLPNGSASPPLDLELI 60

Query: 61  PIKSSSHSLTYTSLRDILP-SPTSMSSPTAA-SAANSGFEISIRNRLVKQAAWAYLQPMS 117
            +K+S +S  YTSL+DILP S  +++SPTAA SA+NSG+EISIRNRLVKQAAWAYLQPM+
Sbjct: 61  SLKASFNS--YTSLKDILPSSAVAINSPTAAGSASNSGYEISIRNRLVKQAAWAYLQPMA 116

[Close]

BLAST of Carg16200 vs. TrEMBL
Match: tr|A0A1R3HDV1|A0A1R3HDV1_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_29613 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.9e-18
Identity = 68/121 (56.20%), Postives = 85/121 (70.25%), Query Frame = 0


Query: 1   MDDISAQKPYPPPPNLRRRNSIAVPVVVPSKLNLFA---FAATKSSGGSAASPPLAFELF 60
           MDD + Q   P    LRRRNSI+ PV +P+KL+L          S    +ASPPL  EL 
Sbjct: 1   MDDEAEQ---PSLSTLRRRNSISSPVQLPTKLSLLTPDPLQTANSLPNGSASPPLDLELI 60

Query: 61  PIKSSSHSLTYTSLRDILP-SPTSMSSPTAA-SAANSGFEISIRNRLVKQAAWAYLQPMS 117
            +K+S +S  YTSL+DILP S  +++SPTAA SA+NSG+EISIRNRLVKQAAWAYLQPM+
Sbjct: 61  SLKASFNS--YTSLKDILPSSAVAINSPTAAGSASNSGYEISIRNRLVKQAAWAYLQPMA 116

The following BLAST results are available for this feature:

BLAST of Carg16200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022957964.1	4.3e-54	100.00	uncharacterized protein LOC111459312 [Cucurbita moschata]	[more]
XP_023005655.1	1.3e-53	98.28	uncharacterized protein LOC111498593 [Cucurbita maxima]	[more]
XP_023539526.1	9.0e-52	97.41	uncharacterized protein LOC111800166 [Cucurbita pepo subsp. pepo]	[more]
XP_023526406.1	3.4e-35	77.42	uncharacterized protein LOC111789917 [Cucurbita pepo subsp. pepo]	[more]
XP_022935679.1	7.6e-35	77.24	uncharacterized protein LOC111442465 [Cucurbita moschata]	[more]

BLAST of Carg16200 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G06280.1	4.8e-07	40.00	unknown protein	[more]
AT3G52520.1	1.8e-06	49.37	unknown protein	[more]

BLAST of Carg16200 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg16200 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LE45\|A0A0A0LE45_CUCSA	1.5e-34	77.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778400 PE=4 SV=1	[more]
tr\|A0A1S3B6B1\|A0A1S3B6B1_CUCME	3.3e-34	77.05	uncharacterized protein LOC103486660 OS=Cucumis melo OX=3656 GN=LOC103486660 PE=...	[more]
tr\|A0A2P5FHZ6\|A0A2P5FHZ6_9ROSA	2.3e-19	58.20	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_068630 PE=4 S...	[more]
tr\|A0A1R3IIV5\|A0A1R3IIV5_COCAP	1.5e-18	56.20	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_11929 PE=4 ...	[more]
tr\|A0A1R3HDV1\|A0A1R3HDV1_9ROSI	1.9e-18	56.20	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_29613 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16200-RA	Carg16200-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 192..206
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 191..213
None	No IPR available	PANTHER	PTHR34569	FAMILY NOT NAMED	coord: 3..118
None	No IPR available	PANTHER	PTHR34569:SF2	SUBFAMILY NOT NAMED	coord: 3..118

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg16200	Cla017647	Watermelon (97103) v1	carwmB0677
Carg16200	Csa3G778400	Cucumber (Chinese Long) v2	carcuB0700
Carg16200	MELO3C009518	Melon (DHL92) v3.5.1	carmeB0679
Carg16200	ClCG10G018510	Watermelon (Charleston Gray)	carwcgB0656
Carg16200	CSPI03G35400	Wild cucumber (PI 183967)	carcpiB0712
Carg16200	CmaCh14G003450	Cucurbita maxima (Rimu)	carcmaB0955
Carg16200	CmoCh14G003400	Cucurbita moschata (Rifu)	carcmoB0931
Carg16200	CmoCh06G005090	Cucurbita moschata (Rifu)	carcmoB0933
Carg16200	Lsi03G018470	Bottle gourd (USVL1VR-Ls)	carlsiB620
Carg16200	Cp4.1LG08g09700	Cucurbita pepo (Zucchini)	carcpeB0957
Carg16200	Cp4.1LG03g00460	Cucurbita pepo (Zucchini)	carcpeB0956
Carg16200	MELO3C009518.2	Melon (DHL92) v3.6.1	carmedB0691
Carg16200	CsaV3_3G037750	Cucumber (Chinese Long) v3	carcucB0714
Carg16200	Bhi11G002022	Wax gourd	carwgoB0796

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg16200	Carg03643	Silver-seed gourd	carcarB291

The following block(s) are covering this gene:

None