Carg23465 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GGCCATCATTATTTCATTGGTTTATCATATTGAACGTTCAAATCTCATCTTCAAGCCATTAACATTCAACCTTCCCTTCACTTCACCAAACCAAGAGAGCCCATGGCTGCCTCTAACCTTTCATGCATCGCTTCTGGTGTGATCATACCATCTTCAACCACCATTTCTTCCTCTTCTAGGCCATCTTCTGTGGCTTTCTTCCCCAAGAATTCCATCTCTATTTCGAGATCATGTCGATTGGTTGTCCGGGCCGCCGCCGATGAGGCCGCTGCCCCTCCCCCTGCTGCCGCTGCCACCGCCGACGCCCCCGCCGAAGCGCCCAAGCCTAAGCCGGCCCCAATTGGCCCCAAGAGAGGTACCAAGGTGGGTAAAAACGATCAGATTTGAATCTTTGATCTTTTGAGTAATTTTAGACGCTCAAATCTTGTCATGGATTTGAACAGGTGAAGATTTTAAGGAGAGAATCCTATTGGTACAAGGATGTTGGATCTGTTGTCACGGTTGACCAGGTTCGACACTTACAATTTACTTAATTTTATTATGTTTGTTTGTTCATGTTAGAGTGGTTAAGGTTTATGAGGATCTATGTCTTGTTAAGTGGTTAAGGATGTTTTGTTTTGAAATAGGTTCTTGTTTATGTTATAACCGACCGTGTTTTGTTGCTGTTCGATGACTATTTAGTTTTTAGTTTTCGAGAAAATCGTACTTATTTTCTTATAAATTTTTAGAACGATAAGTTGTTGAGCTTGATTTCTCGAAAATCTAGTATTTCTTCTAACCATCTTTCAAAATTTCTTCATTTTGCGATTCACGTTTTAAATTGAAATTTACTAATCACTAATTCAGTGGTCGAGATTAAGATATAATCTCGACCCGTAATAAGAAGTTTGAATAGACAGCAAATGAGTTGTAGAACGTTCGTATAGATTGATTAACGATTAATGTGTGAATGATATTTTGCAGGACCCGAACACTCGATATCCAGTTGTGGTTAGATTTAACAAAGTAAATTATGCAAGTGTATCAACAAACAACTATGCACTTGATGAGATTGAAGAAGTTGCTTAAGCTTTTTATGTGGTTTTGTATTTTTTAGTTAAATGTTTGTATAATACTTCCAATTTCAATCTATTTCTCCTCTCTCCATGAGTGTGTGTTAGTAATTCTTCCCATAATCTCTCTTCATTAATATATTTGAAAAGGATCGATAACGTGATTCGATGATATTTAGATTCTGAGCTCGATATGGATACTTATTATGCAAAGGTATATGGGGTCGTGGTAGT GGCCATCATTATTTCATTGGTTTATCATATTGAACGTTCAAATCTCATCTTCAAGCCATTAACATTCAACCTTCCCTTCACTTCACCAAACCAAGAGAGCCCATGGCTGCCTCTAACCTTTCATGCATCGCTTCTGGTGTGATCATACCATCTTCAACCACCATTTCTTCCTCTTCTAGGCCATCTTCTGTGGCTTTCTTCCCCAAGAATTCCATCTCTATTTCGAGATCATGTCGATTGGTTGTCCGGGCCGCCGCCGATGAGGCCGCTGCCCCTCCCCCTGCTGCCGCTGCCACCGCCGACGCCCCCGCCGAAGCGCCCAAGCCTAAGCCGGCCCCAATTGGCCCCAAGAGAGGTACCAAGGTGAAGATTTTAAGGAGAGAATCCTATTGGTACAAGGATGTTGGATCTGTTGTCACGGTTGACCAGGACCCGAACACTCGATATCCAGTTGTGGTTAGATTTAACAAAGTAAATTATGCAAGTGTATCAACAAACAACTATGCACTTGATGAGATTGAAGAAGTTGCTTAAGCTTTTTATGTGGTTTTGTATTTTTTAGTTAAATGTTTGTATAATACTTCCAATTTCAATCTATTTCTCCTCTCTCCATGAGTGTGTGTTAGTAATTCTTCCCATAATCTCTCTTCATTAATATATTTGAAAAGGATCGATAACGTGATTCGATGATATTTAGATTCTGAGCTCGATATGGATACTTATTATGCAAAGGTATATGGGGTCGTGGTAGT ATGGCTGCCTCTAACCTTTCATGCATCGCTTCTGGTGTGATCATACCATCTTCAACCACCATTTCTTCCTCTTCTAGGCCATCTTCTGTGGCTTTCTTCCCCAAGAATTCCATCTCTATTTCGAGATCATGTCGATTGGTTGTCCGGGCCGCCGCCGATGAGGCCGCTGCCCCTCCCCCTGCTGCCGCTGCCACCGCCGACGCCCCCGCCGAAGCGCCCAAGCCTAAGCCGGCCCCAATTGGCCCCAAGAGAGGTACCAAGGTGAAGATTTTAAGGAGAGAATCCTATTGGTACAAGGATGTTGGATCTGTTGTCACGGTTGACCAGGACCCGAACACTCGATATCCAGTTGTGGTTAGATTTAACAAAGTAAATTATGCAAGTGTATCAACAAACAACTATGCACTTGATGAGATTGAAGAAGTTGCTTAA MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
BLAST of Carg23465 vs. NCBI nr
Match: XP_022937722.1 (photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita moschata]) HSP 1 Score: 205.3 bits (521), Expect = 1.4e-49 Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0
BLAST of Carg23465 vs. NCBI nr
Match: XP_022965997.1 (photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita maxima]) HSP 1 Score: 203.0 bits (515), Expect = 6.9e-49 Identity = 141/143 (98.60%), Postives = 141/143 (98.60%), Query Frame = 0
BLAST of Carg23465 vs. NCBI nr
Match: XP_023536804.1 (photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 201.8 bits (512), Expect = 1.5e-48 Identity = 140/143 (97.90%), Postives = 141/143 (98.60%), Query Frame = 0
BLAST of Carg23465 vs. NCBI nr
Match: XP_022144405.1 (photosystem I reaction center subunit IV, chloroplastic-like [Momordica charantia]) HSP 1 Score: 165.2 bits (417), Expect = 1.6e-37 Identity = 110/143 (76.92%), Postives = 115/143 (80.42%), Query Frame = 0
BLAST of Carg23465 vs. NCBI nr
Match: XP_022929705.1 (photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita moschata]) HSP 1 Score: 157.9 bits (398), Expect = 2.5e-35 Identity = 123/145 (84.83%), Postives = 128/145 (88.28%), Query Frame = 0
BLAST of Carg23465 vs. TAIR10
Match: AT2G20260.1 (photosystem I subunit E-2) HSP 1 Score: 115.5 bits (288), Expect = 2.6e-26 Identity = 53/62 (85.48%), Postives = 59/62 (95.16%), Query Frame = 0
BLAST of Carg23465 vs. TAIR10
Match: AT4G28750.1 (Photosystem I reaction centre subunit IV / PsaE protein) HSP 1 Score: 114.8 bits (286), Expect = 4.5e-26 Identity = 98/136 (72.06%), Postives = 111/136 (81.62%), Query Frame = 0
BLAST of Carg23465 vs. Swiss-Prot
Match: sp|Q41229|PSAEB_NICSY (Photosystem I reaction center subunit IV B, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=PSAEB PE=1 SV=1) HSP 1 Score: 120.6 bits (301), Expect = 1.5e-26 Identity = 55/62 (88.71%), Postives = 60/62 (96.77%), Query Frame = 0
BLAST of Carg23465 vs. Swiss-Prot
Match: sp|Q41228|PSAEA_NICSY (Photosystem I reaction center subunit IV A, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=PSAEA PE=1 SV=1) HSP 1 Score: 117.9 bits (294), Expect = 9.5e-26 Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0
BLAST of Carg23465 vs. Swiss-Prot
Match: sp|P12354|PSAE_SPIOL (Photosystem I reaction center subunit IV, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSAE-1 PE=1 SV=1) HSP 1 Score: 115.9 bits (289), Expect = 3.6e-25 Identity = 92/127 (72.44%), Postives = 101/127 (79.53%), Query Frame = 0
BLAST of Carg23465 vs. Swiss-Prot
Match: sp|Q9S714|PSAE2_ARATH (Photosystem I reaction center subunit IV B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAE2 PE=2 SV=1) HSP 1 Score: 115.5 bits (288), Expect = 4.7e-25 Identity = 53/62 (85.48%), Postives = 59/62 (95.16%), Query Frame = 0
BLAST of Carg23465 vs. Swiss-Prot
Match: sp|Q9S831|PSAE1_ARATH (Photosystem I reaction center subunit IV A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAE1 PE=1 SV=1) HSP 1 Score: 114.8 bits (286), Expect = 8.1e-25 Identity = 98/136 (72.06%), Postives = 111/136 (81.62%), Query Frame = 0
BLAST of Carg23465 vs. TrEMBL
Match: tr|A0A1S3B3T3|A0A1S3B3T3_CUCME (photosystem I reaction center subunit IV, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103485855 PE=4 SV=1) HSP 1 Score: 127.9 bits (320), Expect = 1.9e-26 Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0
BLAST of Carg23465 vs. TrEMBL
Match: tr|A0A0A0LJQ1|A0A0A0LJQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G079660 PE=4 SV=1) HSP 1 Score: 126.7 bits (317), Expect = 4.1e-26 Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 0
BLAST of Carg23465 vs. TrEMBL
Match: tr|I3SXG8|I3SXG8_MEDTR (Photosystem I reaction center subunit IV A OS=Medicago truncatula OX=3880 GN=25484169 PE=2 SV=1) HSP 1 Score: 124.8 bits (312), Expect = 1.6e-25 Identity = 100/147 (68.03%), Postives = 117/147 (79.59%), Query Frame = 0
BLAST of Carg23465 vs. TrEMBL
Match: tr|A0A059D406|A0A059D406_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B02162 PE=4 SV=1) HSP 1 Score: 124.0 bits (310), Expect = 2.7e-25 Identity = 88/135 (65.19%), Postives = 100/135 (74.07%), Query Frame = 0
BLAST of Carg23465 vs. TrEMBL
Match: tr|A0A2P5AKU0|A0A2P5AKU0_PARAD (Photosystem I PsaE, reaction centre subunit IV OS=Parasponia andersonii OX=3476 GN=PanWU01x14_322740 PE=4 SV=1) HSP 1 Score: 124.0 bits (310), Expect = 2.7e-25 Identity = 59/62 (95.16%), Postives = 60/62 (96.77%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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