Cp4.1LG07g08230 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG07g08230
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Photosystem I reaction center subunit IV
Location	Cp4.1LG07 : 7408080 .. 7409543 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTTCACTTCACCAAACCAAGAGAGCCCATGGCTGCCTCTAACCTTTCATGCATTGCTTCTGGTGTGATTATTCCATCTTCACCCACCATTTCTTCCTCTTCTAGGCCATCTTCTGTGGCTTTCTTCCCCAAGAATTCCATCTCGATTTCGAGATCATGTCGATTGGTTGTCCGGGCCGCCGCCGATGAGGCCGCTGCCCCTCCCCCTGCTGCCGCTGCCACCGCCGACGCCCCCGCCGAAGCGCCCAAGCCTAAGCCGGCCCCAATTGGCCCCAAGAGAGGTACCAAGGTGGGTGAAATCGATCGATCAGATTTGAATCTTTAATCTTTTGAGTAATTCTAGACGCTCAAATCTTGTCATGGATTTGAACAGGTGAAGATTTTAAGGAAAGAATCCTACTGGTACAAGGATGTTGGATCTGTTGTCACAGTTGACCAGGTTCGACCCTTACCATTTACTTAATTTTATGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNGGTTAAGGATGTTTTGTTTTGAAATGGGTTCTTGCTCATGATGACCATTTTGTTTTTAGTTTTCGAGAAAATCGTACTTATTTTCTTATAAATTTTTAGTACGCTAAGCTGTTGAGCTTGATTTCTCGAAAATCTAACGTTTCTTCTAACCATCTTTTAAAAACTTCTTCGTTTTGCGATTCACGTTTTAAACTGAAATTTGTTGGATGATGAAAGTCCCACATCGGCTAATTTAGGTAATGATCATGGGTTTACAAGCAAAGAATACTCTTCCCATTGAAATGAGGCCTTTTGGGGAAATCCAAAGCAAAGCCATGAAAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTTTTCCTCTAACTAAATTTACTAATCATTAATTCAGTGGTCGAGATTTTGCCGTAATGGGAAGCTTGAATAGACGACAAATGAGTTGTAGAACGTTCGTATAGATTGATTAACGATTAATGTGTGAATGATATTTTGCAGGACCCGAACACTCGATATCCAGTTGTGGTTAGATTTAACAAAGTAAATTATGCAAGTGTATCAACAAACAACTATGCACTTGATGAGATTGAAGAAGTTGCTTAAGCTTTTCTATGTGGTTTTGTATTTTTTAGTTAAATGTTTGTATAATACTTCCAATTTCAATCTATTTCTCCTCTCTCCATGAGTGTGTGCTTAGTAATTGTTCCCATAATTTCTCTTCCATTTTGCTTATATGCTTCACAAGAGTAGAAAATGAAGGAAAATGTACAAATTTCATTAAAATGTTTGAAAAGGATAAAAAAAGTTTATGAACGATAGCGTGATTCGATGATATTTAGATTATGAGCTCGATATGGGCACTTATTATGCAAACATATATGGGGTTGTGGTAGTCGTGTATTTCAGATAGCATACATGACTACCTTAACGTCA

mRNA sequence

CCTTCACTTCACCAAACCAAGAGAGCCCATGGCTGCCTCTAACCTTTCATGCATTGCTTCTGGTGTGATTATTCCATCTTCACCCACCATTTCTTCCTCTTCTAGGCCATCTTCTGTGGCTTTCTTCCCCAAGAATTCCATCTCGATTTCGAGATCATGTCGATTGGTTGTCCGGGCCGCCGCCGATGAGGCCGCTGCCCCTCCCCCTGCTGCCGCTGCCACCGCCGACGCCCCCGCCGAAGCGCCCAAGCCTAAGCCGGCCCCAATTGGCCCCAAGAGAGGTACCAAGGTGAAGATTTTAAGGAAAGAATCCTACTGGTACAAGGATGTTGGATCTGTTGTCACAGTTGACCAGGACCCGAACACTCGATATCCAGTTGTGGTTAGATTTAACAAAGTAAATTATGCAAGTGTATCAACAAACAACTATGCACTTGATGAGATTGAAGAAGTTGCTTAAGCTTTTCTATGTGGTTTTGTATTTTTTAGTTAAATGTTTGTATAATACTTCCAATTTCAATCTATTTCTCCTCTCTCCATGAGTGTGTGCTTAGTAATTGTTCCCATAATTTCTCTTCCATTTTGCTTATATGCTTCACAAGAGTAGAAAATGAAGGAAAATGTACAAATTTCATTAAAATGTTTGAAAAGGATAAAAAAAGTTTATGAACGATAGCGTGATTCGATGATATTTAGATTATGAGCTCGATATGGGCACTTATTATGCAAACATATATGGGGTTGTGGTAGTCGTGTATTTCAGATAGCATACATGACTACCTTAACGTCA

Coding sequence (CDS)

ATGGCTGCCTCTAACCTTTCATGCATTGCTTCTGGTGTGATTATTCCATCTTCACCCACCATTTCTTCCTCTTCTAGGCCATCTTCTGTGGCTTTCTTCCCCAAGAATTCCATCTCGATTTCGAGATCATGTCGATTGGTTGTCCGGGCCGCCGCCGATGAGGCCGCTGCCCCTCCCCCTGCTGCCGCTGCCACCGCCGACGCCCCCGCCGAAGCGCCCAAGCCTAAGCCGGCCCCAATTGGCCCCAAGAGAGGTACCAAGGTGAAGATTTTAAGGAAAGAATCCTACTGGTACAAGGATGTTGGATCTGTTGTCACAGTTGACCAGGACCCGAACACTCGATATCCAGTTGTGGTTAGATTTAACAAAGTAAATTATGCAAGTGTATCAACAAACAACTATGCACTTGATGAGATTGAAGAAGTTGCTTAA

Protein sequence

MAASNLSCIASGVIIPSSPTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA

Homology

[Close]

BLAST of Cp4.1LG07g08230 vs. Swiss-Prot
Match: PSAEB_NICSY (Photosystem I reaction center subunit IV B, chloroplastic OS=Nicotiana sylvestris GN=PSAEB PE=1 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.2e-33
Identity = 88/145 (60.69%), Postives = 108/145 (74.48%), Query Frame = 1


Query: 1   MAASNLSCIASGVII--PSSPTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAP 60
           MA+S+++  ASG ++  P+  T +++ R S + F    + + +   RLVVRAA + A   
Sbjct: 1   MASSSMASAASGFMVATPNIATSNTAPRTSMLFFSSSKNNTTTNFPRLVVRAAEEAA--- 60

Query: 61  PPAAAATADAPAEAPKP-KPAPIGPKRGTKVKILRKESYWYKDVGSVVTVDQDPNTRYPV 120
           PPAA ATA+  A   K  KP PIGPKRGTKV++LRKESYWYK VGSVV VDQDPNTRYPV
Sbjct: 61  PPAATATAEGEAPPAKAAKPPPIGPKRGTKVRVLRKESYWYKGVGSVVAVDQDPNTRYPV 120

Query: 121 VVRFNKVNYASVSTNNYALDEIEEV 143
           VVRFNKVNYA+VSTNNYALDE+EEV
Sbjct: 121 VVRFNKVNYANVSTNNYALDEVEEV 142

[Close]

BLAST of Cp4.1LG07g08230 vs. Swiss-Prot
Match: PSAEA_NICSY (Photosystem I reaction center subunit IV A, chloroplastic OS=Nicotiana sylvestris GN=PSAEA PE=1 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.6e-33
Identity = 92/146 (63.01%), Postives = 111/146 (76.03%), Query Frame = 1


Query: 1   MAASNLSCIASGVIIPSSPTISSSSRPS--SVAFFPKNSISISRSCRLVVRAAADEAAAP 60
           MA+ N++  AS  ++ ++P ++S++  S  ++ FF   +   S + RLVVRAA + A   
Sbjct: 1   MASCNMASAASNFLV-ATPNVASNTNTSRTTMLFFSSKNYG-STAPRLVVRAAEEAA--- 60

Query: 61  PPAAAATADAPAEAP--KPKPAPIGPKRGTKVKILRKESYWYKDVGSVVTVDQDPNTRYP 120
           PPAAAATA+ PAEAP    KP PIGPKRGTKV+ILRKESYWYK  GSVV  DQDPNTRYP
Sbjct: 61  PPAAAATAE-PAEAPVKAAKPPPIGPKRGTKVRILRKESYWYKGTGSVVACDQDPNTRYP 120

Query: 121 VVVRFNKVNYASVSTNNYALDEIEEV 143
           VVVRFNKVNYA+VSTNNYALDEIEEV
Sbjct: 121 VVVRFNKVNYANVSTNNYALDEIEEV 140

[Close]

BLAST of Cp4.1LG07g08230 vs. Swiss-Prot
Match: PSAE_SPIOL (Photosystem I reaction center subunit IV, chloroplastic OS=Spinacia oleracea GN=PSAE-1 PE=1 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.8e-32
Identity = 80/110 (72.73%), Postives = 89/110 (80.91%), Query Frame = 1


Query: 34  PKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKVKILRK 93
           P  + S  RS RLVVRAA +EAAA P AA+   +AP  A KP   PIGPKRG+KV+I+RK
Sbjct: 19  PNKNFSSPRSTRLVVRAA-EEAAAAPAAASPEGEAPKAAAKPP--PIGPKRGSKVRIMRK 78

Query: 94  ESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA 144
           ESYWYK VGSVV VDQDP TRYPVVVRFNKVNYA+VSTNNYALDEI+EVA
Sbjct: 79  ESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDEIQEVA 125

[Close]

BLAST of Cp4.1LG07g08230 vs. Swiss-Prot
Match: PSAE1_ARATH (Photosystem I reaction center subunit IV A, chloroplastic OS=Arabidopsis thaliana GN=PSAE1 PE=1 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.5e-31
Identity = 86/137 (62.77%), Postives = 100/137 (72.99%), Query Frame = 1


Query: 14  IIPSSPT--ISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPP-----PAAAATA 73
           ++P++ T    +SS  SSV+F P  +       RLVVRAA D A A       PAAAA  
Sbjct: 11  VLPANVTSVAGASSSRSSVSFLPMRNAG----SRLVVRAAEDPAPASSSSKDSPAAAAAP 70

Query: 74  DAPAEAPKPKPAPIGPKRGTKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNY 133
           D  A A KPKP PIGPKRG+KVKILR+ESYW+K+VGSVV VDQDP TRYPVVVRF KVNY
Sbjct: 71  DG-ATATKPKPPPIGPKRGSKVKILRRESYWFKNVGSVVAVDQDPKTRYPVVVRFAKVNY 130

Query: 134 ASVSTNNYALDEIEEVA 144
           A++STNNYALDE+EEVA
Sbjct: 131 ANISTNNYALDEVEEVA 142

[Close]

BLAST of Cp4.1LG07g08230 vs. Swiss-Prot
Match: PSAE2_ARATH (Photosystem I reaction center subunit IV B, chloroplastic OS=Arabidopsis thaliana GN=PSAE2 PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 8.2e-30
Identity = 83/137 (60.58%), Postives = 96/137 (70.07%), Query Frame = 1


Query: 15  IPSSPTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAAT-------AD 74
           +P++    SS   + V+F P  S       RLVVRAA D     PPA A++       A 
Sbjct: 16  VPAAIGGGSSKSTTIVSFLPMRSFG----SRLVVRAAEDT----PPATASSDSSSTTAAA 75

Query: 75  APAEAP--KPKPAPIGPKRGTKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVN 134
           APA+ P  K KP PIGPKRG+KVKILRKESYWYK+VGSVV VDQDP TRYPVVVRF KVN
Sbjct: 76  APAKVPAAKAKPPPIGPKRGSKVKILRKESYWYKNVGSVVAVDQDPKTRYPVVVRFAKVN 135

Query: 135 YASVSTNNYALDEIEEV 143
           YA++STNNYALDE+EEV
Sbjct: 136 YANISTNNYALDEVEEV 144

[Close]

BLAST of Cp4.1LG07g08230 vs. TrEMBL
Match: A0A0A0LJQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G079660 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 5.3e-52
Identity = 122/144 (84.72%), Postives = 128/144 (88.89%), Query Frame = 1


Query: 1   MAASNLSCIASGVIIPSSPTISSSS-RPSSVAFFPKNSISISRSCRLVVRAAADEAAAPP 60
           MAASNLSCIASGV+IPSS TISSSS R SS+AFFPKNS SISRS RLV+RA+  + AAPP
Sbjct: 79  MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAS--DEAAPP 138

Query: 61  PAAAATADAPAEAPKPKPAPIGPKRGTKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV 120
           PAA A   A  E PKPKPAPIGPKRG KVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV
Sbjct: 139 PAATAPTAATTEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV 198

Query: 121 RFNKVNYASVSTNNYALDEIEEVA 144
           RFNKVNYASVSTNNYALDEI+EVA
Sbjct: 199 RFNKVNYASVSTNNYALDEIQEVA 220

[Close]

BLAST of Cp4.1LG07g08230 vs. TrEMBL
Match: A0A061DN75_THECC (Photosystem I subunit E-2 OS=Theobroma cacao GN=TCM_003771 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 4.4e-38
Identity = 101/144 (70.14%), Postives = 116/144 (80.56%), Query Frame = 1


Query: 1   MAASNLSCIASGVII-PSSPTISSSSRPSSVAFFP-KNSISISRSCRLVVRAAADEAAAP 60
           MA+ +++  ASG ++ P+    +SS+  +S+AFFP KNS + S S RLVVRAA +EAAAP
Sbjct: 1   MASCSMASAASGFLLTPNVTGNASSASKTSMAFFPSKNSNNNSNSSRLVVRAA-EEAAAP 60

Query: 61  PPAAAATADAPAEAPKPKPAPIGPKRGTKVKILRKESYWYKDVGSVVTVDQDPNTRYPVV 120
            PA   T  AP EAPKPKPAPIGPKRGTKVKILR+ESYWY   GSVVTVDQDP TRYPVV
Sbjct: 61  APA---TTTAPPEAPKPKPAPIGPKRGTKVKILRRESYWYNSYGSVVTVDQDPKTRYPVV 120

Query: 121 VRFNKVNYASVSTNNYALDEIEEV 143
           VRFNKVNYA+VSTNNYALDEIEEV
Sbjct: 121 VRFNKVNYANVSTNNYALDEIEEV 140

[Close]

BLAST of Cp4.1LG07g08230 vs. TrEMBL
Match: B9S592_RICCO (Photosystem I reaction center subunit IV A, chloroplast OS=Ricinus communis GN=RCOM_1723530 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.6e-35
Identity = 94/143 (65.73%), Postives = 114/143 (79.72%), Query Frame = 1


Query: 1   MAASNLSCIASGVII-PSSPTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPP 60
           MA+ +++  ASG ++ P+ P  ++SS  S++ +FP  + +I+ S RLVVR AA+EAAAP 
Sbjct: 1   MASCSMASAASGFLLTPNVPANTNSSSRSNMVYFPSKNNNINNS-RLVVR-AAEEAAAPA 60

Query: 61  PAAAATADAPAEAPKPKPAPIGPKRGTKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV 120
           P A  TA A  EAPKPKP PIGPKRGTKVKILR+ESYWY  +GSVV VDQDP TRYPVVV
Sbjct: 61  P-ATTTAPAEGEAPKPKPPPIGPKRGTKVKILRRESYWYNGIGSVVAVDQDPKTRYPVVV 120

Query: 121 RFNKVNYASVSTNNYALDEIEEV 143
           RF+KVNYA+VSTNNYALDEIEEV
Sbjct: 121 RFDKVNYANVSTNNYALDEIEEV 140

[Close]

BLAST of Cp4.1LG07g08230 vs. TrEMBL
Match: A0A067JR52_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17594 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.0e-35
Identity = 95/147 (64.63%), Postives = 114/147 (77.55%), Query Frame = 1


Query: 1   MAASNLSCIASGVIIPSSPTISSSSRPSS---VAFFPKNSISISRSCRLVVRAAADEAAA 60
           MA+ +++  ASG ++  +P +SS++   S   +AFFP  + + + S RLVVRAA +E AA
Sbjct: 1   MASCSMASAASGFLL--TPNVSSNTNSGSRTNMAFFPAKNNNNNNSSRLVVRAA-EEGAA 60

Query: 61  PPPAAAATADAPA--EAPKPKPAPIGPKRGTKVKILRKESYWYKDVGSVVTVDQDPNTRY 120
           PP    AT +APA  EAPKPKP PIGPKRGTKVKILR+ESYWY  +GSVV VDQDP TRY
Sbjct: 61  PP----ATTEAPAATEAPKPKPPPIGPKRGTKVKILRRESYWYNGIGSVVAVDQDPKTRY 120

Query: 121 PVVVRFNKVNYASVSTNNYALDEIEEV 143
           PVVVRFNKVNYA+VSTNNYALDEIEEV
Sbjct: 121 PVVVRFNKVNYANVSTNNYALDEIEEV 140

[Close]

BLAST of Cp4.1LG07g08230 vs. TrEMBL
Match: M5VP59_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012923mg PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 3.5e-35
Identity = 93/147 (63.27%), Postives = 110/147 (74.83%), Query Frame = 1


Query: 1   MAASNLSCIASGVIIP-----SSPTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEA 60
           MA+  ++  ASG ++      ++ T S+SSR S + F  K + +   + R V+RAA DEA
Sbjct: 3   MASCGMASAASGFVVAPNVAAANNTGSASSRSSMLFFSSKPNTNTRNNARFVIRAA-DEA 62

Query: 61  AAPPPAAAATADAPAEAPKPKPAPIGPKRGTKVKILRKESYWYKDVGSVVTVDQDPNTRY 120
           AA PPAA   A   A APKPKP PIGPKRGTKVKILR+ESYW+K +GSVV VDQDPNTRY
Sbjct: 63  AAAPPAATKEAPEGAAAPKPKPPPIGPKRGTKVKILRRESYWFKGIGSVVAVDQDPNTRY 122

Query: 121 PVVVRFNKVNYASVSTNNYALDEIEEV 143
           PVVVRFNKVNYA+VSTNNYALDEIEEV
Sbjct: 123 PVVVRFNKVNYANVSTNNYALDEIEEV 148

[Close]

BLAST of Cp4.1LG07g08230 vs. TAIR10
Match: AT4G28750.1 (AT4G28750.1 Photosystem I reaction centre subunit IV / PsaE protein)

HSP 1 Score: 137.1 bits (344), Expect = 8.4e-33
Identity = 86/137 (62.77%), Postives = 100/137 (72.99%), Query Frame = 1


Query: 14  IIPSSPT--ISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPP-----PAAAATA 73
           ++P++ T    +SS  SSV+F P  +       RLVVRAA D A A       PAAAA  
Sbjct: 11  VLPANVTSVAGASSSRSSVSFLPMRNAG----SRLVVRAAEDPAPASSSSKDSPAAAAAP 70

Query: 74  DAPAEAPKPKPAPIGPKRGTKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNY 133
           D  A A KPKP PIGPKRG+KVKILR+ESYW+K+VGSVV VDQDP TRYPVVVRF KVNY
Sbjct: 71  DG-ATATKPKPPPIGPKRGSKVKILRRESYWFKNVGSVVAVDQDPKTRYPVVVRFAKVNY 130

Query: 134 ASVSTNNYALDEIEEVA 144
           A++STNNYALDE+EEVA
Sbjct: 131 ANISTNNYALDEVEEVA 142

[Close]

BLAST of Cp4.1LG07g08230 vs. TAIR10
Match: AT2G20260.1 (AT2G20260.1 photosystem I subunit E-2)

HSP 1 Score: 131.3 bits (329), Expect = 4.6e-31
Identity = 83/137 (60.58%), Postives = 96/137 (70.07%), Query Frame = 1


Query: 15  IPSSPTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAAT-------AD 74
           +P++    SS   + V+F P  S       RLVVRAA D     PPA A++       A 
Sbjct: 16  VPAAIGGGSSKSTTIVSFLPMRSFG----SRLVVRAAEDT----PPATASSDSSSTTAAA 75

Query: 75  APAEAP--KPKPAPIGPKRGTKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVN 134
           APA+ P  K KP PIGPKRG+KVKILRKESYWYK+VGSVV VDQDP TRYPVVVRF KVN
Sbjct: 76  APAKVPAAKAKPPPIGPKRGSKVKILRKESYWYKNVGSVVAVDQDPKTRYPVVVRFAKVN 135

Query: 135 YASVSTNNYALDEIEEV 143
           YA++STNNYALDE+EEV
Sbjct: 136 YANISTNNYALDEVEEV 144

[Close]

BLAST of Cp4.1LG07g08230 vs. NCBI nr
Match: gi|659082368|ref|XP_008441802.1| (PREDICTED: photosystem I reaction center subunit IV, chloroplastic-like [Cucumis melo])

HSP 1 Score: 223.0 bits (567), Expect = 3.3e-55
Identity = 127/144 (88.19%), Postives = 131/144 (90.97%), Query Frame = 1


Query: 1   MAASNLSCIASGVIIPSSPTIS-SSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPP 60
           MAASNLSCIASGV+IPSS TIS SSSR SS+AFFPKNS SISRS RLV+RAAA + AAPP
Sbjct: 3   MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEAAPP 62

Query: 61  PAAAATADAPAEAPKPKPAPIGPKRGTKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV 120
           P AAA A A AE PKPKPAPIGPKRG KVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV
Sbjct: 63  PPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV 122

Query: 121 RFNKVNYASVSTNNYALDEIEEVA 144
           RFNKVNYASVSTNNYALDEIEEVA
Sbjct: 123 RFNKVNYASVSTNNYALDEIEEVA 146

[Close]

BLAST of Cp4.1LG07g08230 vs. NCBI nr
Match: gi|778668006|ref|XP_004152807.2| (PREDICTED: photosystem I reaction center subunit IV, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 211.8 bits (538), Expect = 7.6e-52
Identity = 122/144 (84.72%), Postives = 128/144 (88.89%), Query Frame = 1


Query: 1   MAASNLSCIASGVIIPSSPTISSSS-RPSSVAFFPKNSISISRSCRLVVRAAADEAAAPP 60
           MAASNLSCIASGV+IPSS TISSSS R SS+AFFPKNS SISRS RLV+RA+  + AAPP
Sbjct: 3   MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAS--DEAAPP 62

Query: 61  PAAAATADAPAEAPKPKPAPIGPKRGTKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV 120
           PAA A   A  E PKPKPAPIGPKRG KVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV
Sbjct: 63  PAATAPTAATTEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV 122

Query: 121 RFNKVNYASVSTNNYALDEIEEVA 144
           RFNKVNYASVSTNNYALDEI+EVA
Sbjct: 123 RFNKVNYASVSTNNYALDEIQEVA 144

[Close]

BLAST of Cp4.1LG07g08230 vs. NCBI nr
Match: gi|700206195|gb|KGN61314.1| (hypothetical protein Csa_2G079660 [Cucumis sativus])

HSP 1 Score: 211.8 bits (538), Expect = 7.6e-52
Identity = 122/144 (84.72%), Postives = 128/144 (88.89%), Query Frame = 1


Query: 1   MAASNLSCIASGVIIPSSPTISSSS-RPSSVAFFPKNSISISRSCRLVVRAAADEAAAPP 60
           MAASNLSCIASGV+IPSS TISSSS R SS+AFFPKNS SISRS RLV+RA+  + AAPP
Sbjct: 79  MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAS--DEAAPP 138

Query: 61  PAAAATADAPAEAPKPKPAPIGPKRGTKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV 120
           PAA A   A  E PKPKPAPIGPKRG KVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV
Sbjct: 139 PAATAPTAATTEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV 198

Query: 121 RFNKVNYASVSTNNYALDEIEEVA 144
           RFNKVNYASVSTNNYALDEI+EVA
Sbjct: 199 RFNKVNYASVSTNNYALDEIQEVA 220

[Close]

BLAST of Cp4.1LG07g08230 vs. NCBI nr
Match: gi|590715020|ref|XP_007050077.1| (Photosystem I subunit E-2 [Theobroma cacao])

HSP 1 Score: 165.6 bits (418), Expect = 6.3e-38
Identity = 101/144 (70.14%), Postives = 116/144 (80.56%), Query Frame = 1


Query: 1   MAASNLSCIASGVII-PSSPTISSSSRPSSVAFFP-KNSISISRSCRLVVRAAADEAAAP 60
           MA+ +++  ASG ++ P+    +SS+  +S+AFFP KNS + S S RLVVRAA +EAAAP
Sbjct: 1   MASCSMASAASGFLLTPNVTGNASSASKTSMAFFPSKNSNNNSNSSRLVVRAA-EEAAAP 60

Query: 61  PPAAAATADAPAEAPKPKPAPIGPKRGTKVKILRKESYWYKDVGSVVTVDQDPNTRYPVV 120
            PA   T  AP EAPKPKPAPIGPKRGTKVKILR+ESYWY   GSVVTVDQDP TRYPVV
Sbjct: 61  APA---TTTAPPEAPKPKPAPIGPKRGTKVKILRRESYWYNSYGSVVTVDQDPKTRYPVV 120

Query: 121 VRFNKVNYASVSTNNYALDEIEEV 143
           VRFNKVNYA+VSTNNYALDEIEEV
Sbjct: 121 VRFNKVNYANVSTNNYALDEIEEV 140

[Close]

BLAST of Cp4.1LG07g08230 vs. NCBI nr
Match: gi|255560287|ref|XP_002521161.1| (PREDICTED: photosystem I reaction center subunit IV A, chloroplastic [Ricinus communis])

HSP 1 Score: 157.1 bits (396), Expect = 2.2e-35
Identity = 94/143 (65.73%), Postives = 114/143 (79.72%), Query Frame = 1


Query: 1   MAASNLSCIASGVII-PSSPTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPP 60
           MA+ +++  ASG ++ P+ P  ++SS  S++ +FP  + +I+ S RLVVR AA+EAAAP 
Sbjct: 1   MASCSMASAASGFLLTPNVPANTNSSSRSNMVYFPSKNNNINNS-RLVVR-AAEEAAAPA 60

Query: 61  PAAAATADAPAEAPKPKPAPIGPKRGTKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV 120
           P A  TA A  EAPKPKP PIGPKRGTKVKILR+ESYWY  +GSVV VDQDP TRYPVVV
Sbjct: 61  P-ATTTAPAEGEAPKPKPPPIGPKRGTKVKILRRESYWYNGIGSVVAVDQDPKTRYPVVV 120

Query: 121 RFNKVNYASVSTNNYALDEIEEV 143
           RF+KVNYA+VSTNNYALDEIEEV
Sbjct: 121 RFDKVNYANVSTNNYALDEIEEV 140

The following BLAST results are available for this feature:

BLAST of Cp4.1LG07g08230 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSAEB_NICSY	1.2e-33	60.69	Photosystem I reaction center subunit IV B, chloroplastic OS=Nicotiana sylvestri...	[more]
PSAEA_NICSY	1.6e-33	63.01	Photosystem I reaction center subunit IV A, chloroplastic OS=Nicotiana sylvestri...	[more]
PSAE_SPIOL	1.8e-32	72.73	Photosystem I reaction center subunit IV, chloroplastic OS=Spinacia oleracea GN=...	[more]
PSAE1_ARATH	1.5e-31	62.77	Photosystem I reaction center subunit IV A, chloroplastic OS=Arabidopsis thalian...	[more]
PSAE2_ARATH	8.2e-30	60.58	Photosystem I reaction center subunit IV B, chloroplastic OS=Arabidopsis thalian...	[more]

BLAST of Cp4.1LG07g08230 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJQ1_CUCSA	5.3e-52	84.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G079660 PE=4 SV=1	[more]
A0A061DN75_THECC	4.4e-38	70.14	Photosystem I subunit E-2 OS=Theobroma cacao GN=TCM_003771 PE=4 SV=1	[more]
B9S592_RICCO	1.6e-35	65.73	Photosystem I reaction center subunit IV A, chloroplast OS=Ricinus communis GN=R...	[more]
A0A067JR52_JATCU	2.0e-35	64.63	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17594 PE=4 SV=1	[more]
M5VP59_PRUPE	3.5e-35	63.27	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012923mg PE=4 SV=1	[more]

BLAST of Cp4.1LG07g08230 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G28750.1	8.4e-33	62.77	Photosystem I reaction centre subunit IV / PsaE protein	[more]
AT2G20260.1	4.6e-31	60.58	photosystem I subunit E-2	[more]

BLAST of Cp4.1LG07g08230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082368\|ref\|XP_008441802.1\|	3.3e-55	88.19	PREDICTED: photosystem I reaction center subunit IV, chloroplastic-like [Cucumis...	[more]
gi\|778668006\|ref\|XP_004152807.2\|	7.6e-52	84.72	PREDICTED: photosystem I reaction center subunit IV, chloroplastic-like [Cucumis...	[more]
gi\|700206195\|gb\|KGN61314.1\|	7.6e-52	84.72	hypothetical protein Csa_2G079660 [Cucumis sativus]	[more]
gi\|590715020\|ref\|XP_007050077.1\|	6.3e-38	70.14	Photosystem I subunit E-2 [Theobroma cacao]	[more]
gi\|255560287\|ref\|XP_002521161.1\|	2.2e-35	65.73	PREDICTED: photosystem I reaction center subunit IV A, chloroplastic [Ricinus co...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

Vocabulary: **Cellular Component**
Term	Definition
GO:0009538	photosystem I reaction center
GO:0009522	photosystem I

Vocabulary: **INTERPRO**
Term	Definition
IPR008990	Elect_transpt_acc-like_dom_sf
IPR003375	PSI_PsaE

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009538	photosystem I reaction center
cellular_component	GO:0009522	photosystem I
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG07g08230.1	Cp4.1LG07g08230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003375	Photosystem I PsaE, reaction centre subunit IV	PRODOM	PD004772		coord: 89..142 score: 3.0
IPR003375	Photosystem I PsaE, reaction centre subunit IV	PFAM	PF02427	PSI_PsaE	coord: 83..142 score: 6.9
IPR008990	Electron transport accessory protein-like domain	unknown	SSF50090	Electron transport accessory proteins	coord: 82..142 score: 9.12
None	No IPR available	GENE3D	G3DSA:2.30.30.50		coord: 82..142 score: 1.2
None	No IPR available	PANTHER	PTHR34549	FAMILY NOT NAMED	coord: 2..143 score: 4.0
None	No IPR available	PANTHER	PTHR34549:SF2	PHOTOSYSTEM I REACTION CENTER SUBUNIT IV A, CHLOROPLASTIC-RELATED	coord: 2..143 score: 4.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG07g08230	Cucsa.178170	Cucumber (Gy14) v1	cgycpeB0492
Cp4.1LG07g08230	CmaCh12G009820	Cucurbita maxima (Rimu)	cmacpeB203
Cp4.1LG07g08230	CmaCh05G007770	Cucurbita maxima (Rimu)	cmacpeB790
Cp4.1LG07g08230	CmoCh05G008160	Cucurbita moschata (Rifu)	cmocpeB743
Cp4.1LG07g08230	CmoCh12G009900	Cucurbita moschata (Rifu)	cmocpeB175
Cp4.1LG07g08230	Cla007871	Watermelon (97103) v1	cpewmB811
Cp4.1LG07g08230	Csa2G079660	Cucumber (Chinese Long) v2	cpecuB811
Cp4.1LG07g08230	MELO3C008663	Melon (DHL92) v3.5.1	cpemeB775
Cp4.1LG07g08230	ClCG11G010230	Watermelon (Charleston Gray)	cpewcgB723
Cp4.1LG07g08230	CSPI02G07690	Wild cucumber (PI 183967)	cpecpiB812
Cp4.1LG07g08230	Lsi11G009110	Bottle gourd (USVL1VR-Ls)	cpelsiB654
Cp4.1LG07g08230	MELO3C008663.2	Melon (DHL92) v3.6.1	cpemedB911
Cp4.1LG07g08230	CsaV3_2G010090	Cucumber (Chinese Long) v3	cpecucB1005
Cp4.1LG07g08230	Bhi06G000917	Wax gourd	cpewgoB1016
Cp4.1LG07g08230	CsGy2G007920	Cucumber (Gy14) v2	cgybcpeB261
Cp4.1LG07g08230	Carg23465	Silver-seed gourd	carcpeB0676

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG07g08230	Cp4.1LG11g06910	Cucurbita pepo (Zucchini)	cpecpeB142

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG07g08230	Melon (DHL92) v3.5.1	cpemeB780
Cp4.1LG07g08230	Melon (DHL92) v3.6.1	cpemedB913
Cp4.1LG07g08230	Melon (DHL92) v3.6.1	cpemedB916