CmaCh05G007770 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh05G007770
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Photosystem I reaction center subunit IV A
Location	Cma_Chr05 : 4628925 .. 4630106 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCTTCAATCTGTGATGTTATCATTATTCAAAGCATTGATACTCAAACCCCAAAGCTGCTTTGAGCCAGACAAAGGCCATGGCTGCCTCTAACCTTTCATGCATAGCTTCTGGAGTGCTCATTCCATCTCCACCCACCATATCATCATCCTCCTCTTCTAGGTTATCTTCTTTCGCCATCTTCCCTAACCATTCTAGATCATCTAGATTCGTTATCCGTGCCGCCGCCGACGAAGCTGCTCCCCCAACCCCTGCTGCTCCCGCCACCGCCGCGGCCACTGAAGAACCCAAGCCTAAGCCTCCCCCTATTGGTCCCAAAAGAGGTGCCAAGGTGTGTGAGAACTTTTTGTTCCAAACTTTGAAAGATTCCAACTTCTAGTCTATAATCATTTAACTAAAAAATATTGTCATGTATTTAAACAGGTAAAGATTCTAAGGAAAGAATCCTACTGGTACAAAGATGTTGGATCGGTTGTAACAGTTGACCAGGTTTGACCCTTGAACTTTTGTTCATTTATGATTTTTCTTTCTCGGTGTGTGCAAATAGAAACTTTTTGGTTATAATAGAAACTTTTTGGTTATATTAATTATGGGATTGATGTTCGAAATTGATTTCTCAAAAAATTGGATGCTTCTTCTAATGCCCTTTTTGGAATTTTGATTTTATCGTATTTTTTTATGTATAAAATTGAAATTTATTGAACACTAGTTGAACTTATGTTACAGTCGATTTATGTGTATGATGGTGCTTCATTTTGCAGGACCCGAATACTCGATATCCCGTTGTAGTTAGATTTAACAAAGTAAATTATGCAAATGTATCAACAAACAACTATGCACTTGATGAGATTAAGGAAGTTGCTTAAGCTTTGAATGTGCTTGTGTATTTTTTGAGTTAAATGTTTGTATAATACTTTCAATTTCAATCTATTTCTCCTCTCCCCATGAGTGTGTTTCCACCCATAATTTCTCATCCTTAGATTTTTTTATGCTTAGTTAGGGAGTTGAAGTGTGTATGGATTGGTTAAAGAAATCTTTTAGACCAAAATTTGGGGTTAGTTAAGCCGGTGACCAGATCAATCCAAATAAAGTTATCCGACCCAACCCTCTATTTTTAGGTTGGATTGAGTTGAGTTGTCAGAGTTTTTTTTCAATTATTTAAAGAAAAATCTACATATCTAC

mRNA sequence

CTCCTTCAATCTGTGATGTTATCATTATTCAAAGCATTGATACTCAAACCCCAAAGCTGCTTTGAGCCAGACAAAGGCCATGGCTGCCTCTAACCTTTCATGCATAGCTTCTGGAGTGCTCATTCCATCTCCACCCACCATATCATCATCCTCCTCTTCTAGGTTATCTTCTTTCGCCATCTTCCCTAACCATTCTAGATCATCTAGATTCGTTATCCGTGCCGCCGCCGACGAAGCTGCTCCCCCAACCCCTGCTGCTCCCGCCACCGCCGCGGCCACTGAAGAACCCAAGCCTAAGCCTCCCCCTATTGGTCCCAAAAGAGGTGCCAAGGTAAAGATTCTAAGGAAAGAATCCTACTGGTACAAAGATGTTGGATCGGTTGTAACAGTTGACCAGGACCCGAATACTCGATATCCCGTTGTAGTTAGATTTAACAAAGTAAATTATGCAAATGTATCAACAAACAACTATGCACTTGATGAGATTAAGGAAGTTGCTTAAGCTTTGAATGTGCTTGTGTATTTTTTGAGTTAAATGTTTGTATAATACTTTCAATTTCAATCTATTTCTCCTCTCCCCATGAGTGTGTTTCCACCCATAATTTCTCATCCTTAGATTTTTTTATGCTTAGTTAGGGAGTTGAAGTGTGTATGGATTGGTTAAAGAAATCTTTTAGACCAAAATTTGGGGTTAGTTAAGCCGGTGACCAGATCAATCCAAATAAAGTTATCCGACCCAACCCTCTATTTTTAGGTTGGATTGAGTTGAGTTGTCAGAGTTTTTTTTCAATTATTTAAAGAAAAATCTACATATCTAC

Coding sequence (CDS)

ATGGCTGCCTCTAACCTTTCATGCATAGCTTCTGGAGTGCTCATTCCATCTCCACCCACCATATCATCATCCTCCTCTTCTAGGTTATCTTCTTTCGCCATCTTCCCTAACCATTCTAGATCATCTAGATTCGTTATCCGTGCCGCCGCCGACGAAGCTGCTCCCCCAACCCCTGCTGCTCCCGCCACCGCCGCGGCCACTGAAGAACCCAAGCCTAAGCCTCCCCCTATTGGTCCCAAAAGAGGTGCCAAGGTAAAGATTCTAAGGAAAGAATCCTACTGGTACAAAGATGTTGGATCGGTTGTAACAGTTGACCAGGACCCGAATACTCGATATCCCGTTGTAGTTAGATTTAACAAAGTAAATTATGCAAATGTATCAACAAACAACTATGCACTTGATGAGATTAAGGAAGTTGCTTAA

Protein sequence

MAASNLSCIASGVLIPSPPTISSSSSSRLSSFAIFPNHSRSSRFVIRAAADEAAPPTPAAPATAAATEEPKPKPPPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYANVSTNNYALDEIKEVA

Homology

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BLAST of CmaCh05G007770 vs. Swiss-Prot
Match: PSAEB_NICSY (Photosystem I reaction center subunit IV B, chloroplastic OS=Nicotiana sylvestris GN=PSAEB PE=1 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 7.0e-34
Identity = 85/143 (59.44%), Postives = 107/143 (74.83%), Query Frame = 1


Query: 1   MAASNLSCIASGVLIPSPPTISSSSSSRLSS--FAIFPNHSRSS--RFVIRAAADEAAPP 60
           MA+S+++  ASG ++ +P   +S+++ R S   F+   N++ ++  R V+RAA +EAAPP
Sbjct: 1   MASSSMASAASGFMVATPNIATSNTAPRTSMLFFSSSKNNTTTNFPRLVVRAA-EEAAPP 60

Query: 61  TPAAPATAAATEEPKPKPPPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV 120
              A A   A      KPPPIGPKRG KV++LRKESYWYK VGSVV VDQDPNTRYPVVV
Sbjct: 61  AATATAEGEAPPAKAAKPPPIGPKRGTKVRVLRKESYWYKGVGSVVAVDQDPNTRYPVVV 120

Query: 121 RFNKVNYANVSTNNYALDEIKEV 140
           RFNKVNYANVSTNNYALDE++EV
Sbjct: 121 RFNKVNYANVSTNNYALDEVEEV 142

[Close]

BLAST of CmaCh05G007770 vs. Swiss-Prot
Match: PSAEA_NICSY (Photosystem I reaction center subunit IV A, chloroplastic OS=Nicotiana sylvestris GN=PSAEA PE=1 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.0e-33
Identity = 85/141 (60.28%), Postives = 101/141 (71.63%), Query Frame = 1


Query: 1   MAASNLSCIASGVLIPSPPTISSSSSSRLSSFAIFPNH--SRSSRFVIRAAADEAAPPTP 60
           MA+ N++  AS  L+ +P   S++++SR +       +  S + R V+RAA +EAAPP  
Sbjct: 1   MASCNMASAASNFLVATPNVASNTNTSRTTMLFFSSKNYGSTAPRLVVRAA-EEAAPPAA 60

Query: 61  AAPATAAATEEPKPKPPPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRF 120
           AA A  A       KPPPIGPKRG KV+ILRKESYWYK  GSVV  DQDPNTRYPVVVRF
Sbjct: 61  AATAEPAEAPVKAAKPPPIGPKRGTKVRILRKESYWYKGTGSVVACDQDPNTRYPVVVRF 120

Query: 121 NKVNYANVSTNNYALDEIKEV 140
           NKVNYANVSTNNYALDEI+EV
Sbjct: 121 NKVNYANVSTNNYALDEIEEV 140

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BLAST of CmaCh05G007770 vs. Swiss-Prot
Match: PSAE1_ARATH (Photosystem I reaction center subunit IV A, chloroplastic OS=Arabidopsis thaliana GN=PSAE1 PE=1 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.0e-32
Identity = 82/135 (60.74%), Postives = 98/135 (72.59%), Query Frame = 1


Query: 14  LIPSPPTISSSSSSRLSSFAIFPNHSRSSRFVIRAAADEA--------APPTPAAPATAA 73
           ++P+  T  + +SS  SS +  P  +  SR V+RAA D A        +P   AAP  A 
Sbjct: 11  VLPANVTSVAGASSSRSSVSFLPMRNAGSRLVVRAAEDPAPASSSSKDSPAAAAAPDGAT 70

Query: 74  ATEEPKPKPPPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYAN 133
           AT   KPKPPPIGPKRG+KVKILR+ESYW+K+VGSVV VDQDP TRYPVVVRF KVNYAN
Sbjct: 71  AT---KPKPPPIGPKRGSKVKILRRESYWFKNVGSVVAVDQDPKTRYPVVVRFAKVNYAN 130

Query: 134 VSTNNYALDEIKEVA 141
           +STNNYALDE++EVA
Sbjct: 131 ISTNNYALDEVEEVA 142

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BLAST of CmaCh05G007770 vs. Swiss-Prot
Match: PSAE_SPIOL (Photosystem I reaction center subunit IV, chloroplastic OS=Spinacia oleracea GN=PSAE-1 PE=1 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.3e-32
Identity = 81/125 (64.80%), Postives = 95/125 (76.00%), Query Frame = 1


Query: 20  TISSSSSSRLSSFAIFPNHS----RSSRFVIRAAADEAAPPTPAAPATAAATEEPKPKPP 79
           +I+SS + RL    + PN +    RS+R V+RAA + AA P  A+P   A   +   KPP
Sbjct: 3   SIASSVAVRLGLTQVLPNKNFSSPRSTRLVVRAAEEAAAAPAAASPEGEA--PKAAAKPP 62

Query: 80  PIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYANVSTNNYALDE 139
           PIGPKRG+KV+I+RKESYWYK VGSVV VDQDP TRYPVVVRFNKVNYANVSTNNYALDE
Sbjct: 63  PIGPKRGSKVRIMRKESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDE 122

Query: 140 IKEVA 141
           I+EVA
Sbjct: 123 IQEVA 125

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BLAST of CmaCh05G007770 vs. Swiss-Prot
Match: PSAE2_ARATH (Photosystem I reaction center subunit IV B, chloroplastic OS=Arabidopsis thaliana GN=PSAE2 PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 8.0e-30
Identity = 80/142 (56.34%), Postives = 98/142 (69.01%), Query Frame = 1


Query: 6   LSCIASGVLIPS--PPTISSSSSSRLSSFAIFPNHSRSSRFVIRAAADE----AAPPTPA 65
           ++  A+G ++ +  P  I   SS   +  +  P  S  SR V+RAA D     A+  + +
Sbjct: 3   MTSAATGFILTANVPAAIGGGSSKSTTIVSFLPMRSFGSRLVVRAAEDTPPATASSDSSS 62

Query: 66  APATAAATEEP--KPKPPPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVR 125
             A AA  + P  K KPPPIGPKRG+KVKILRKESYWYK+VGSVV VDQDP TRYPVVVR
Sbjct: 63  TTAAAAPAKVPAAKAKPPPIGPKRGSKVKILRKESYWYKNVGSVVAVDQDPKTRYPVVVR 122

Query: 126 FNKVNYANVSTNNYALDEIKEV 140
           F KVNYAN+STNNYALDE++EV
Sbjct: 123 FAKVNYANISTNNYALDEVEEV 144

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BLAST of CmaCh05G007770 vs. TrEMBL
Match: A0A0A0LJQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G079660 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.1e-49
Identity = 120/144 (83.33%), Postives = 125/144 (86.81%), Query Frame = 1


Query: 1   MAASNLSCIASGVLIPSPPTISSSSSSRLSSFAIFPNHS----RSSRFVIRAAADEAAPP 60
           MAASNLSCIASGV+IPS  TISSSSS RLSS A FP +S    RSSR VIRA+ DEAAPP
Sbjct: 79  MAASNLSCIASGVVIPSSTTISSSSS-RLSSLAFFPKNSNSISRSSRLVIRAS-DEAAPP 138

Query: 61  TPAAPATAAATEEPKPKPPPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV 120
             A   TAA TEEPKPKP PIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV
Sbjct: 139 PAATAPTAATTEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV 198

Query: 121 RFNKVNYANVSTNNYALDEIKEVA 141
           RFNKVNYA+VSTNNYALDEI+EVA
Sbjct: 199 RFNKVNYASVSTNNYALDEIQEVA 220

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BLAST of CmaCh05G007770 vs. TrEMBL
Match: A0A067JR52_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17594 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.0e-35
Identity = 93/144 (64.58%), Postives = 111/144 (77.08%), Query Frame = 1


Query: 1   MAASNLSCIASGVLIPSPPTISSSSSSRLSSFAIFP----NHSRSSRFVIRAAADEAAPP 60
           MA+ +++  ASG L+ +P   S+++S   ++ A FP    N++ SSR V+RAA + AAPP
Sbjct: 1   MASCSMASAASGFLL-TPNVSSNTNSGSRTNMAFFPAKNNNNNNSSRLVVRAAEEGAAPP 60

Query: 61  -TPAAPATAAATEEPKPKPPPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVV 120
            T  AP   AATE PKPKPPPIGPKRG KVKILR+ESYWY  +GSVV VDQDP TRYPVV
Sbjct: 61  ATTEAP---AATEAPKPKPPPIGPKRGTKVKILRRESYWYNGIGSVVAVDQDPKTRYPVV 120

Query: 121 VRFNKVNYANVSTNNYALDEIKEV 140
           VRFNKVNYANVSTNNYALDEI+EV
Sbjct: 121 VRFNKVNYANVSTNNYALDEIEEV 140

[Close]

BLAST of CmaCh05G007770 vs. TrEMBL
Match: A0A061DN75_THECC (Photosystem I subunit E-2 OS=Theobroma cacao GN=TCM_003771 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 9.8e-35
Identity = 93/144 (64.58%), Postives = 108/144 (75.00%), Query Frame = 1


Query: 1   MAASNLSCIASGVLIPSPPTISSSSSSRLSSFAIFP-----NHSRSSRFVIRAAADEAAP 60
           MA+ +++  ASG L+ +P    ++SS+  +S A FP     N+S SSR V+RAA +EAA 
Sbjct: 1   MASCSMASAASGFLL-TPNVTGNASSASKTSMAFFPSKNSNNNSNSSRLVVRAA-EEAAA 60

Query: 61  PTPAAPATAAATEEPKPKPPPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVV 120
           P PA   T A  E PKPKP PIGPKRG KVKILR+ESYWY   GSVVTVDQDP TRYPVV
Sbjct: 61  PAPAT--TTAPPEAPKPKPAPIGPKRGTKVKILRRESYWYNSYGSVVTVDQDPKTRYPVV 120

Query: 121 VRFNKVNYANVSTNNYALDEIKEV 140
           VRFNKVNYANVSTNNYALDEI+EV
Sbjct: 121 VRFNKVNYANVSTNNYALDEIEEV 140

[Close]

BLAST of CmaCh05G007770 vs. TrEMBL
Match: A0A0B0NME8_GOSAR (Photosystem I reaction center subunit IV, chloroplastic OS=Gossypium arboreum GN=F383_21733 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.2e-34
Identity = 90/141 (63.83%), Postives = 107/141 (75.89%), Query Frame = 1


Query: 1   MAASNLSCIASGVLIPSPPTISSSSSSRLSSFAIFPN-HSRSSRFVIRAAADEAAPPTPA 60
           MA S+++  ASG L+ +P   ++SSS+  ++   FP+ ++ +SR V+  AADEAA P PA
Sbjct: 1   MATSSMASAASGFLL-TPNVAANSSSTSKTTTVFFPSKNNNNSRLVVTRAADEAAAPAPA 60

Query: 61  AP-ATAAATEEPKPKPPPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRF 120
              A +   E PKPKPPPIGPKRG KVKILR+ESYWY   GSVVTVDQDP TRYPVVVRF
Sbjct: 61  TTTAPSEGGEAPKPKPPPIGPKRGTKVKILRRESYWYNSFGSVVTVDQDPKTRYPVVVRF 120

Query: 121 NKVNYANVSTNNYALDEIKEV 140
           NKVNYANVSTNNYALDEI EV
Sbjct: 121 NKVNYANVSTNNYALDEIAEV 140

[Close]

BLAST of CmaCh05G007770 vs. TrEMBL
Match: I3SXG8_MEDTR (Photosystem I reaction center subunit IV A OS=Medicago truncatula GN=MTR_1g069235 PE=2 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 3.7e-34
Identity = 95/148 (64.19%), Postives = 109/148 (73.65%), Query Frame = 1


Query: 1   MAASNLSCIASGVLIP-----SPPTISSSSSSRLSSFAIFPNH--SRSSRFVIRAAADEA 60
           MA+S+++  A+G L+      +  T S+SS S +  F +  N+  S SSR V+RA  DEA
Sbjct: 1   MASSSMASAATGFLLSLNVAANSTTSSASSRSTMLMFPLKSNNIGSSSSRLVVRAT-DEA 60

Query: 61  APPTPAAPATAAA--TEEPKPKPPPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTR 120
           AP  PAAPA  AA     PKPKPPPIGPKRG+KVKILRKESYWYK  GSVV VDQDP TR
Sbjct: 61  APAAPAAPAAPAADAAPTPKPKPPPIGPKRGSKVKILRKESYWYKGTGSVVAVDQDPKTR 120

Query: 121 YPVVVRFNKVNYANVSTNNYALDEIKEV 140
           YPVVVRF KVNYANVSTNNYALDEI+EV
Sbjct: 121 YPVVVRFQKVNYANVSTNNYALDEIEEV 147

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BLAST of CmaCh05G007770 vs. TAIR10
Match: AT4G28750.1 (AT4G28750.1 Photosystem I reaction centre subunit IV / PsaE protein)

HSP 1 Score: 141.0 bits (354), Expect = 5.7e-34
Identity = 82/135 (60.74%), Postives = 98/135 (72.59%), Query Frame = 1


Query: 14  LIPSPPTISSSSSSRLSSFAIFPNHSRSSRFVIRAAADEA--------APPTPAAPATAA 73
           ++P+  T  + +SS  SS +  P  +  SR V+RAA D A        +P   AAP  A 
Sbjct: 11  VLPANVTSVAGASSSRSSVSFLPMRNAGSRLVVRAAEDPAPASSSSKDSPAAAAAPDGAT 70

Query: 74  ATEEPKPKPPPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYAN 133
           AT   KPKPPPIGPKRG+KVKILR+ESYW+K+VGSVV VDQDP TRYPVVVRF KVNYAN
Sbjct: 71  AT---KPKPPPIGPKRGSKVKILRRESYWFKNVGSVVAVDQDPKTRYPVVVRFAKVNYAN 130

Query: 134 VSTNNYALDEIKEVA 141
           +STNNYALDE++EVA
Sbjct: 131 ISTNNYALDEVEEVA 142

[Close]

BLAST of CmaCh05G007770 vs. TAIR10
Match: AT2G20260.1 (AT2G20260.1 photosystem I subunit E-2)

HSP 1 Score: 131.3 bits (329), Expect = 4.5e-31
Identity = 80/142 (56.34%), Postives = 98/142 (69.01%), Query Frame = 1


Query: 6   LSCIASGVLIPS--PPTISSSSSSRLSSFAIFPNHSRSSRFVIRAAADE----AAPPTPA 65
           ++  A+G ++ +  P  I   SS   +  +  P  S  SR V+RAA D     A+  + +
Sbjct: 3   MTSAATGFILTANVPAAIGGGSSKSTTIVSFLPMRSFGSRLVVRAAEDTPPATASSDSSS 62

Query: 66  APATAAATEEP--KPKPPPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVR 125
             A AA  + P  K KPPPIGPKRG+KVKILRKESYWYK+VGSVV VDQDP TRYPVVVR
Sbjct: 63  TTAAAAPAKVPAAKAKPPPIGPKRGSKVKILRKESYWYKNVGSVVAVDQDPKTRYPVVVR 122

Query: 126 FNKVNYANVSTNNYALDEIKEV 140
           F KVNYAN+STNNYALDE++EV
Sbjct: 123 FAKVNYANISTNNYALDEVEEV 144

[Close]

BLAST of CmaCh05G007770 vs. NCBI nr
Match: gi|659082368|ref|XP_008441802.1| (PREDICTED: photosystem I reaction center subunit IV, chloroplastic-like [Cucumis melo])

HSP 1 Score: 207.2 bits (526), Expect = 1.8e-50
Identity = 122/145 (84.14%), Postives = 126/145 (86.90%), Query Frame = 1


Query: 1   MAASNLSCIASGVLIPSPPTISSSSSSRLSSFAIFPNHS----RSSRFVIRAAA-DEAAP 60
           MAASNLSCIASGV+IPS  TISSSSS RLSS A FP +S    RSSR VIRAAA DEAAP
Sbjct: 3   MAASNLSCIASGVVIPSSTTISSSSS-RLSSLAFFPKNSNSISRSSRLVIRAAASDEAAP 62

Query: 61  PTPAAPATAAATEEPKPKPPPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVV 120
           P PAA   AA  EEPKPKP PIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVV
Sbjct: 63  PPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVV 122

Query: 121 VRFNKVNYANVSTNNYALDEIKEVA 141
           VRFNKVNYA+VSTNNYALDEI+EVA
Sbjct: 123 VRFNKVNYASVSTNNYALDEIEEVA 146

[Close]

BLAST of CmaCh05G007770 vs. NCBI nr
Match: gi|778668006|ref|XP_004152807.2| (PREDICTED: photosystem I reaction center subunit IV, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 204.1 bits (518), Expect = 1.6e-49
Identity = 120/144 (83.33%), Postives = 125/144 (86.81%), Query Frame = 1


Query: 1   MAASNLSCIASGVLIPSPPTISSSSSSRLSSFAIFPNHS----RSSRFVIRAAADEAAPP 60
           MAASNLSCIASGV+IPS  TISSSSS RLSS A FP +S    RSSR VIRA+ DEAAPP
Sbjct: 3   MAASNLSCIASGVVIPSSTTISSSSS-RLSSLAFFPKNSNSISRSSRLVIRAS-DEAAPP 62

Query: 61  TPAAPATAAATEEPKPKPPPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV 120
             A   TAA TEEPKPKP PIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV
Sbjct: 63  PAATAPTAATTEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV 122

Query: 121 RFNKVNYANVSTNNYALDEIKEVA 141
           RFNKVNYA+VSTNNYALDEI+EVA
Sbjct: 123 RFNKVNYASVSTNNYALDEIQEVA 144

[Close]

BLAST of CmaCh05G007770 vs. NCBI nr
Match: gi|700206195|gb|KGN61314.1| (hypothetical protein Csa_2G079660 [Cucumis sativus])

HSP 1 Score: 204.1 bits (518), Expect = 1.6e-49
Identity = 120/144 (83.33%), Postives = 125/144 (86.81%), Query Frame = 1


Query: 1   MAASNLSCIASGVLIPSPPTISSSSSSRLSSFAIFPNHS----RSSRFVIRAAADEAAPP 60
           MAASNLSCIASGV+IPS  TISSSSS RLSS A FP +S    RSSR VIRA+ DEAAPP
Sbjct: 79  MAASNLSCIASGVVIPSSTTISSSSS-RLSSLAFFPKNSNSISRSSRLVIRAS-DEAAPP 138

Query: 61  TPAAPATAAATEEPKPKPPPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV 120
             A   TAA TEEPKPKP PIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV
Sbjct: 139 PAATAPTAATTEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV 198

Query: 121 RFNKVNYANVSTNNYALDEIKEVA 141
           RFNKVNYA+VSTNNYALDEI+EVA
Sbjct: 199 RFNKVNYASVSTNNYALDEIQEVA 220

[Close]

BLAST of CmaCh05G007770 vs. NCBI nr
Match: gi|1021480010|ref|XP_016183198.1| (PREDICTED: photosystem I reaction center subunit IV, chloroplastic [Arachis ipaensis])

HSP 1 Score: 164.1 bits (414), Expect = 1.8e-37
Identity = 101/151 (66.89%), Postives = 114/151 (75.50%), Query Frame = 1


Query: 1   MAASNLSCIASGVLIPSPPTISSSSSSRLSSFAIFP---NHSRS---SRFVIRA----AA 60
           MA+ N++  ASG ++ S  TISSSSSSR+SS  +FP   N+++S   +R V+RA    AA
Sbjct: 1   MASCNMASAASGFVLSSGKTISSSSSSRISSMVMFPSKFNNNKSGSFNRLVVRAEDEGAA 60

Query: 61  DEAAPPTPAAPATA-AATEEPKPKPPPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPN 120
             AAP T   PA   AA   PKPKPPPIGPKRG KVKILRKESYWYK  GSVV VDQDP 
Sbjct: 61  ASAAPATATPPAEGEAAATAPKPKPPPIGPKRGTKVKILRKESYWYKGYGSVVAVDQDPK 120

Query: 121 TRYPVVVRFNKVNYANVSTNNYALDEIKEVA 141
           TRYPVVVRFNKVNYANVSTNNYALDEI+EVA
Sbjct: 121 TRYPVVVRFNKVNYANVSTNNYALDEIEEVA 151

[Close]

BLAST of CmaCh05G007770 vs. NCBI nr
Match: gi|1021551751|ref|XP_016167229.1| (PREDICTED: photosystem I reaction center subunit IV B, chloroplastic-like [Arachis ipaensis])

HSP 1 Score: 158.3 bits (399), Expect = 9.8e-36
Identity = 95/151 (62.91%), Postives = 108/151 (71.52%), Query Frame = 1


Query: 1   MAASNLSCIASGVLIPSPPTISSSSSSRLSSFAIFP-------NHSRSSRFVIRA----A 60
           MA+ N++  ASG ++ +   ISSSSSSR++S  +FP       N    +R V++A    A
Sbjct: 1   MASCNMASAASGFVLSAGNVISSSSSSRVTSTVMFPSRFNNNNNGGSFNRLVVKAEDEAA 60

Query: 61  ADEAAPPTPAAPATAAATEEPKPKPPPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPN 120
           A  AAP T   PA   A   PKPKPPPIGPKRG KVKILRKESYWYK  GSVV VDQDP 
Sbjct: 61  AASAAPATATPPAEGEAAAVPKPKPPPIGPKRGTKVKILRKESYWYKGYGSVVAVDQDPK 120

Query: 121 TRYPVVVRFNKVNYANVSTNNYALDEIKEVA 141
           TRYPVVVRFNKVNYANVSTNNYALDEI+EVA
Sbjct: 121 TRYPVVVRFNKVNYANVSTNNYALDEIEEVA 151

The following BLAST results are available for this feature:

BLAST of CmaCh05G007770 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSAEB_NICSY	7.0e-34	59.44	Photosystem I reaction center subunit IV B, chloroplastic OS=Nicotiana sylvestri...	[more]
PSAEA_NICSY	2.0e-33	60.28	Photosystem I reaction center subunit IV A, chloroplastic OS=Nicotiana sylvestri...	[more]
PSAE1_ARATH	1.0e-32	60.74	Photosystem I reaction center subunit IV A, chloroplastic OS=Arabidopsis thalian...	[more]
PSAE_SPIOL	2.3e-32	64.80	Photosystem I reaction center subunit IV, chloroplastic OS=Spinacia oleracea GN=...	[more]
PSAE2_ARATH	8.0e-30	56.34	Photosystem I reaction center subunit IV B, chloroplastic OS=Arabidopsis thalian...	[more]

BLAST of CmaCh05G007770 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJQ1_CUCSA	1.1e-49	83.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G079660 PE=4 SV=1	[more]
A0A067JR52_JATCU	2.0e-35	64.58	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17594 PE=4 SV=1	[more]
A0A061DN75_THECC	9.8e-35	64.58	Photosystem I subunit E-2 OS=Theobroma cacao GN=TCM_003771 PE=4 SV=1	[more]
A0A0B0NME8_GOSAR	2.2e-34	63.83	Photosystem I reaction center subunit IV, chloroplastic OS=Gossypium arboreum GN...	[more]
I3SXG8_MEDTR	3.7e-34	64.19	Photosystem I reaction center subunit IV A OS=Medicago truncatula GN=MTR_1g06923...	[more]

BLAST of CmaCh05G007770 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G28750.1	5.7e-34	60.74	Photosystem I reaction centre subunit IV / PsaE protein	[more]
AT2G20260.1	4.5e-31	56.34	photosystem I subunit E-2	[more]

BLAST of CmaCh05G007770 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082368\|ref\|XP_008441802.1\|	1.8e-50	84.14	PREDICTED: photosystem I reaction center subunit IV, chloroplastic-like [Cucumis...	[more]
gi\|778668006\|ref\|XP_004152807.2\|	1.6e-49	83.33	PREDICTED: photosystem I reaction center subunit IV, chloroplastic-like [Cucumis...	[more]
gi\|700206195\|gb\|KGN61314.1\|	1.6e-49	83.33	hypothetical protein Csa_2G079660 [Cucumis sativus]	[more]
gi\|1021480010\|ref\|XP_016183198.1\|	1.8e-37	66.89	PREDICTED: photosystem I reaction center subunit IV, chloroplastic [Arachis ipae...	[more]
gi\|1021551751\|ref\|XP_016167229.1\|	9.8e-36	62.91	PREDICTED: photosystem I reaction center subunit IV B, chloroplastic-like [Arach...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003375	PSI_PsaE
IPR008990	Elect_transpt_acc-like_dom_sf

Vocabulary: **Cellular Component**
Term	Definition
GO:0009522	photosystem I
GO:0009538	photosystem I reaction center

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009538	photosystem I reaction center
cellular_component	GO:0009522	photosystem I
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G007770.1	CmaCh05G007770.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003375	Photosystem I PsaE, reaction centre subunit IV	PRODOM	PD004772		coord: 86..140 score: 2.0
IPR003375	Photosystem I PsaE, reaction centre subunit IV	PFAM	PF02427	PSI_PsaE	coord: 80..139 score: 5.8
IPR008990	Electron transport accessory protein-like domain	unknown	SSF50090	Electron transport accessory proteins	coord: 79..139 score: 7.06
None	No IPR available	GENE3D	G3DSA:2.30.30.50		coord: 79..139 score: 1.1
None	No IPR available	PANTHER	PTHR34549	FAMILY NOT NAMED	coord: 2..140 score: 2.0
None	No IPR available	PANTHER	PTHR34549:SF2	PHOTOSYSTEM I REACTION CENTER SUBUNIT IV A, CHLOROPLASTIC-RELATED	coord: 2..140 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh05G007770	Cucsa.178170	Cucumber (Gy14) v1	cgycmaB0510
CmaCh05G007770	Cla007871	Watermelon (97103) v1	cmawmB767
CmaCh05G007770	Csa2G079660	Cucumber (Chinese Long) v2	cmacuB786
CmaCh05G007770	ClCG11G010230	Watermelon (Charleston Gray)	cmawcgB690
CmaCh05G007770	CSPI02G07690	Wild cucumber (PI 183967)	cmacpiB795
CmaCh05G007770	CmoCh05G008160	Cucurbita moschata (Rifu)	cmacmoB786
CmaCh05G007770	CmoCh12G009900	Cucurbita moschata (Rifu)	cmacmoB764
CmaCh05G007770	Lsi11G009110	Bottle gourd (USVL1VR-Ls)	cmalsiB709
CmaCh05G007770	Cp4.1LG11g06910	Cucurbita pepo (Zucchini)	cmacpeB766
CmaCh05G007770	Cp4.1LG07g08230	Cucurbita pepo (Zucchini)	cmacpeB790
CmaCh05G007770	CsaV3_2G010090	Cucumber (Chinese Long) v3	cmacucB0928
CmaCh05G007770	Cla97C11G216530	Watermelon (97103) v2	cmawmbB808
CmaCh05G007770	Bhi06G000917	Wax gourd	cmawgoB0930
CmaCh05G007770	CsGy2G007920	Cucumber (Gy14) v2	cgybcmaB252
CmaCh05G007770	Carg23465	Silver-seed gourd	carcmaB0671

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh05G007770	CmaCh12G009820	Cucurbita maxima (Rimu)	cmacmaB191

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh05G007770	Melon (DHL92) v3.5.1	cmameB737
CmaCh05G007770	Melon (DHL92) v3.5.1	cmameB739
CmaCh05G007770	Melon (DHL92) v3.6.1	cmamedB831
CmaCh05G007770	Melon (DHL92) v3.6.1	cmamedB833
CmaCh05G007770	Silver-seed gourd	carcmaB0553