Carg23465 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23465
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Photosystem I reaction center subunit IV
Location	Cucurbita_argyrosperma_scaffold_196 : 211099 .. 212384 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCCATCATTATTTCATTGGTTTATCATATTGAACGTTCAAATCTCATCTTCAAGCCATTAACATTCAACCTTCCCTTCACTTCACCAAACCAAGAGAGCCCATGGCTGCCTCTAACCTTTCATGCATCGCTTCTGGTGTGATCATACCATCTTCAACCACCATTTCTTCCTCTTCTAGGCCATCTTCTGTGGCTTTCTTCCCCAAGAATTCCATCTCTATTTCGAGATCATGTCGATTGGTTGTCCGGGCCGCCGCCGATGAGGCCGCTGCCCCTCCCCCTGCTGCCGCTGCCACCGCCGACGCCCCCGCCGAAGCGCCCAAGCCTAAGCCGGCCCCAATTGGCCCCAAGAGAGGTACCAAGGTGGGTAAAAACGATCAGATTTGAATCTTTGATCTTTTGAGTAATTTTAGACGCTCAAATCTTGTCATGGATTTGAACAGGTGAAGATTTTAAGGAGAGAATCCTATTGGTACAAGGATGTTGGATCTGTTGTCACGGTTGACCAGGTTCGACACTTACAATTTACTTAATTTTATTATGTTTGTTTGTTCATGTTAGAGTGGTTAAGGTTTATGAGGATCTATGTCTTGTTAAGTGGTTAAGGATGTTTTGTTTTGAAATAGGTTCTTGTTTATGTTATAACCGACCGTGTTTTGTTGCTGTTCGATGACTATTTAGTTTTTAGTTTTCGAGAAAATCGTACTTATTTTCTTATAAATTTTTAGAACGATAAGTTGTTGAGCTTGATTTCTCGAAAATCTAGTATTTCTTCTAACCATCTTTCAAAATTTCTTCATTTTGCGATTCACGTTTTAAATTGAAATTTACTAATCACTAATTCAGTGGTCGAGATTAAGATATAATCTCGACCCGTAATAAGAAGTTTGAATAGACAGCAAATGAGTTGTAGAACGTTCGTATAGATTGATTAACGATTAATGTGTGAATGATATTTTGCAGGACCCGAACACTCGATATCCAGTTGTGGTTAGATTTAACAAAGTAAATTATGCAAGTGTATCAACAAACAACTATGCACTTGATGAGATTGAAGAAGTTGCTTAAGCTTTTTATGTGGTTTTGTATTTTTTAGTTAAATGTTTGTATAATACTTCCAATTTCAATCTATTTCTCCTCTCTCCATGAGTGTGTGTTAGTAATTCTTCCCATAATCTCTCTTCATTAATATATTTGAAAAGGATCGATAACGTGATTCGATGATATTTAGATTCTGAGCTCGATATGGATACTTATTATGCAAAGGTATATGGGGTCGTGGTAGT

mRNA sequence

GGCCATCATTATTTCATTGGTTTATCATATTGAACGTTCAAATCTCATCTTCAAGCCATTAACATTCAACCTTCCCTTCACTTCACCAAACCAAGAGAGCCCATGGCTGCCTCTAACCTTTCATGCATCGCTTCTGGTGTGATCATACCATCTTCAACCACCATTTCTTCCTCTTCTAGGCCATCTTCTGTGGCTTTCTTCCCCAAGAATTCCATCTCTATTTCGAGATCATGTCGATTGGTTGTCCGGGCCGCCGCCGATGAGGCCGCTGCCCCTCCCCCTGCTGCCGCTGCCACCGCCGACGCCCCCGCCGAAGCGCCCAAGCCTAAGCCGGCCCCAATTGGCCCCAAGAGAGGTACCAAGGTGAAGATTTTAAGGAGAGAATCCTATTGGTACAAGGATGTTGGATCTGTTGTCACGGTTGACCAGGACCCGAACACTCGATATCCAGTTGTGGTTAGATTTAACAAAGTAAATTATGCAAGTGTATCAACAAACAACTATGCACTTGATGAGATTGAAGAAGTTGCTTAAGCTTTTTATGTGGTTTTGTATTTTTTAGTTAAATGTTTGTATAATACTTCCAATTTCAATCTATTTCTCCTCTCTCCATGAGTGTGTGTTAGTAATTCTTCCCATAATCTCTCTTCATTAATATATTTGAAAAGGATCGATAACGTGATTCGATGATATTTAGATTCTGAGCTCGATATGGATACTTATTATGCAAAGGTATATGGGGTCGTGGTAGT

Coding sequence (CDS)

ATGGCTGCCTCTAACCTTTCATGCATCGCTTCTGGTGTGATCATACCATCTTCAACCACCATTTCTTCCTCTTCTAGGCCATCTTCTGTGGCTTTCTTCCCCAAGAATTCCATCTCTATTTCGAGATCATGTCGATTGGTTGTCCGGGCCGCCGCCGATGAGGCCGCTGCCCCTCCCCCTGCTGCCGCTGCCACCGCCGACGCCCCCGCCGAAGCGCCCAAGCCTAAGCCGGCCCCAATTGGCCCCAAGAGAGGTACCAAGGTGAAGATTTTAAGGAGAGAATCCTATTGGTACAAGGATGTTGGATCTGTTGTCACGGTTGACCAGGACCCGAACACTCGATATCCAGTTGTGGTTAGATTTAACAAAGTAAATTATGCAAGTGTATCAACAAACAACTATGCACTTGATGAGATTGAAGAAGTTGCTTAA

Protein sequence

MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA

Homology

[Close]

BLAST of Carg23465 vs. NCBI nr
Match: XP_022937722.1 (photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 205.3 bits (521), Expect = 1.4e-49
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAXXXXXXXXX 60
           MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAXXXXXXXXX
Sbjct: 1   MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVR 120
           XXXXXXXXXXXXXXXXXXXXGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVR
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVR 120

Query: 121 FNKVNYASVSTNNYALDEIEEVA 144
           FNKVNYASVSTNNYALDEIEEVA
Sbjct: 121 FNKVNYASVSTNNYALDEIEEVA 143

[Close]

BLAST of Carg23465 vs. NCBI nr
Match: XP_022965997.1 (photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 203.0 bits (515), Expect = 6.9e-49
Identity = 141/143 (98.60%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 1   MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAXXXXXXXXX 60
           MAASNLSCIASGVIIPSS TISSSSRPSSVAFFPKNSISISRSCRLVVRAAXXXXXXXXX
Sbjct: 1   MAASNLSCIASGVIIPSSPTISSSSRPSSVAFFPKNSISISRSCRLVVRAAXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVR 120
           XXXXXXXXXXXXXXXXXXX GPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVR
Sbjct: 61  XXXXXXXXXXXXXXXXXXXIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVR 120

Query: 121 FNKVNYASVSTNNYALDEIEEVA 144
           FNKVNYASVSTNNYALDEIEEVA
Sbjct: 121 FNKVNYASVSTNNYALDEIEEVA 143

[Close]

BLAST of Carg23465 vs. NCBI nr
Match: XP_023536804.1 (photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 201.8 bits (512), Expect = 1.5e-48
Identity = 140/143 (97.90%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 1   MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAXXXXXXXXX 60
           MAASNLSCIASGVIIPSS TISSSSRPSSVAFFPKNSISISRSCRLVVRAA XXXXXXXX
Sbjct: 1   MAASNLSCIASGVIIPSSPTISSSSRPSSVAFFPKNSISISRSCRLVVRAAAXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVR 120
           XXXXXXXXXXXXXXXXXXXXGPKRGTKVKILR+ESYWYKDVGSVVTVDQDPNTRYPVVVR
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXGPKRGTKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVR 120

Query: 121 FNKVNYASVSTNNYALDEIEEVA 144
           FNKVNYASVSTNNYALDEIEEVA
Sbjct: 121 FNKVNYASVSTNNYALDEIEEVA 143

[Close]

BLAST of Carg23465 vs. NCBI nr
Match: XP_022144405.1 (photosystem I reaction center subunit IV, chloroplastic-like [Momordica charantia])

HSP 1 Score: 165.2 bits (417), Expect = 1.6e-37
Identity = 110/143 (76.92%), Postives = 115/143 (80.42%), Query Frame = 0


Query: 1   MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAXXXXXXXXX 60
           MAA+NLSCIASGV+IPSS TISSSSR +SVAFFPKN   ISR  R      XXXXXXXXX
Sbjct: 1   MAATNLSCIASGVVIPSSATISSSSRLTSVAFFPKNPNPISR--RXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVR 120
           XXXXXX              GPKRG KVKILR+ESYWYKDVGSVVTVDQDPNTRYPVVVR
Sbjct: 61  XXXXXXDAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVR 120

Query: 121 FNKVNYASVSTNNYALDEIEEVA 144
           FNKVNYASVSTNNYALDE+EEVA
Sbjct: 121 FNKVNYASVSTNNYALDEVEEVA 141

[Close]

BLAST of Carg23465 vs. NCBI nr
Match: XP_022929705.1 (photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 157.9 bits (398), Expect = 2.5e-35
Identity = 123/145 (84.83%), Postives = 128/145 (88.28%), Query Frame = 0


Query: 1   MAASNLSCIASGVIIPSSTTISSSS--RPSSVAFFPKNSISISRSCRLVVRAAXXXXXXX 60
           MAASNLSCIASGV+IPS  TISSSS  R SS A FP N    SRS R V+RAA XXXXXX
Sbjct: 1   MAASNLSCIASGVLIPSPPTISSSSSFRLSSFAIFPNN----SRSSRFVIRAA-XXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVV 120
           XXXXXXXXXXXXXXXXXXXXX GPKRG KVKILR+ES+WYKDVGSVVTVDQDPNTRYPVV
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXIGPKRGAKVKILRKESFWYKDVGSVVTVDQDPNTRYPVV 120

Query: 121 VRFNKVNYASVSTNNYALDEIEEVA 144
           VRFNKVNYASVSTNNYALDEI+EVA
Sbjct: 121 VRFNKVNYASVSTNNYALDEIKEVA 140

[Close]

BLAST of Carg23465 vs. TAIR10
Match: AT2G20260.1 (photosystem I subunit E-2)

HSP 1 Score: 115.5 bits (288), Expect = 2.6e-26
Identity = 53/62 (85.48%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 81  GPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIE 140
           GPKRG+KVKILR+ESYWYK+VGSVV VDQDP TRYPVVVRF KVNYA++STNNYALDE+E
Sbjct: 83  GPKRGSKVKILRKESYWYKNVGSVVAVDQDPKTRYPVVVRFAKVNYANISTNNYALDEVE 142

Query: 141 EV 143
           EV
Sbjct: 143 EV 144

[Close]

BLAST of Carg23465 vs. TAIR10
Match: AT4G28750.1 (Photosystem I reaction centre subunit IV / PsaE protein)

HSP 1 Score: 114.8 bits (286), Expect = 4.5e-26
Identity = 98/136 (72.06%), Postives = 111/136 (81.62%), Query Frame = 0


Query: 14  IIPSSTT--ISSSSRPSSVAFFPKNSISISRSCRLVVRAA----XXXXXXXXXXXXXXXX 73
           ++P++ T    +SS  SSV+F P      +   RLVVRAA    XXXXXXXXXXXXXXXX
Sbjct: 11  VLPANVTSVAGASSSRSSVSFLPMR----NAGSRLVVRAAEDPXXXXXXXXXXXXXXXXX 70

Query: 74  XXXXXXXXXXXXXGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYA 133
           XXXXXXXXXXXX GPKRG+KVKILRRESYW+K+VGSVV VDQDP TRYPVVVRF KVNYA
Sbjct: 71  XXXXXXXXXXXXIGPKRGSKVKILRRESYWFKNVGSVVAVDQDPKTRYPVVVRFAKVNYA 130

Query: 134 SVSTNNYALDEIEEVA 144
           ++STNNYALDE+EEVA
Sbjct: 131 NISTNNYALDEVEEVA 142

[Close]

BLAST of Carg23465 vs. Swiss-Prot
Match: sp|Q41229|PSAEB_NICSY (Photosystem I reaction center subunit IV B, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=PSAEB PE=1 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.5e-26
Identity = 55/62 (88.71%), Postives = 60/62 (96.77%), Query Frame = 0


Query: 81  GPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIE 140
           GPKRGTKV++LR+ESYWYK VGSVV VDQDPNTRYPVVVRFNKVNYA+VSTNNYALDE+E
Sbjct: 81  GPKRGTKVRVLRKESYWYKGVGSVVAVDQDPNTRYPVVVRFNKVNYANVSTNNYALDEVE 140

Query: 141 EV 143
           EV
Sbjct: 141 EV 142

[Close]

BLAST of Carg23465 vs. Swiss-Prot
Match: sp|Q41228|PSAEA_NICSY (Photosystem I reaction center subunit IV A, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=PSAEA PE=1 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 9.5e-26
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 81  GPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIE 140
           GPKRGTKV+ILR+ESYWYK  GSVV  DQDPNTRYPVVVRFNKVNYA+VSTNNYALDEIE
Sbjct: 79  GPKRGTKVRILRKESYWYKGTGSVVACDQDPNTRYPVVVRFNKVNYANVSTNNYALDEIE 138

Query: 141 EV 143
           EV
Sbjct: 139 EV 140

[Close]

BLAST of Carg23465 vs. Swiss-Prot
Match: sp|P12354|PSAE_SPIOL (Photosystem I reaction center subunit IV, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSAE-1 PE=1 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.6e-25
Identity = 92/127 (72.44%), Postives = 101/127 (79.53%), Query Frame = 0


Query: 17  SSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAXXXXXXXXXXXXXXXXXXXXXXXXX 76
           +S   S + R       P  + S  RS RLVVRAA     XXXXXXXXXXXXXXXXXXXX
Sbjct: 2   ASIASSVAVRLGLTQVLPNKNFSSPRSTRLVVRAA---EEXXXXXXXXXXXXXXXXXXXX 61

Query: 77  XXXXGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYAL 136
           XXXXGPKRG+KV+I+R+ESYWYK VGSVV VDQDP TRYPVVVRFNKVNYA+VSTNNYAL
Sbjct: 62  XXXXGPKRGSKVRIMRKESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYAL 121

Query: 137 DEIEEVA 144
           DEI+EVA
Sbjct: 122 DEIQEVA 125

[Close]

BLAST of Carg23465 vs. Swiss-Prot
Match: sp|Q9S714|PSAE2_ARATH (Photosystem I reaction center subunit IV B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAE2 PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 4.7e-25
Identity = 53/62 (85.48%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 81  GPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIE 140
           GPKRG+KVKILR+ESYWYK+VGSVV VDQDP TRYPVVVRF KVNYA++STNNYALDE+E
Sbjct: 83  GPKRGSKVKILRKESYWYKNVGSVVAVDQDPKTRYPVVVRFAKVNYANISTNNYALDEVE 142

Query: 141 EV 143
           EV
Sbjct: 143 EV 144

[Close]

BLAST of Carg23465 vs. Swiss-Prot
Match: sp|Q9S831|PSAE1_ARATH (Photosystem I reaction center subunit IV A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAE1 PE=1 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 8.1e-25
Identity = 98/136 (72.06%), Postives = 111/136 (81.62%), Query Frame = 0


Query: 14  IIPSSTT--ISSSSRPSSVAFFPKNSISISRSCRLVVRAA----XXXXXXXXXXXXXXXX 73
           ++P++ T    +SS  SSV+F P      +   RLVVRAA    XXXXXXXXXXXXXXXX
Sbjct: 11  VLPANVTSVAGASSSRSSVSFLPMR----NAGSRLVVRAAEDPXXXXXXXXXXXXXXXXX 70

Query: 74  XXXXXXXXXXXXXGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYA 133
           XXXXXXXXXXXX GPKRG+KVKILRRESYW+K+VGSVV VDQDP TRYPVVVRF KVNYA
Sbjct: 71  XXXXXXXXXXXXIGPKRGSKVKILRRESYWFKNVGSVVAVDQDPKTRYPVVVRFAKVNYA 130

Query: 134 SVSTNNYALDEIEEVA 144
           ++STNNYALDE+EEVA
Sbjct: 131 NISTNNYALDEVEEVA 142

[Close]

BLAST of Carg23465 vs. TrEMBL
Match: tr|A0A1S3B3T3|A0A1S3B3T3_CUCME (photosystem I reaction center subunit IV, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103485855 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.9e-26
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 81  GPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIE 140
           GPKRG KVKILR+ESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIE
Sbjct: 84  GPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIE 143

Query: 141 EVA 144
           EVA
Sbjct: 144 EVA 146

[Close]

BLAST of Carg23465 vs. TrEMBL
Match: tr|A0A0A0LJQ1|A0A0A0LJQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G079660 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.1e-26
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 81  GPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIE 140
           GPKRG KVKILR+ESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEI+
Sbjct: 158 GPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIQ 217

Query: 141 EVA 144
           EVA
Sbjct: 218 EVA 220

[Close]

BLAST of Carg23465 vs. TrEMBL
Match: tr|I3SXG8|I3SXG8_MEDTR (Photosystem I reaction center subunit IV A OS=Medicago truncatula OX=3880 GN=25484169 PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.6e-25
Identity = 100/147 (68.03%), Postives = 117/147 (79.59%), Query Frame = 0


Query: 1   MAASNLSCIASGVI----IPSSTTISSSSRPSSVAFFPKNSISI-SRSCRLVVRAAXXXX 60
           MA+S+++  A+G +    + +++T SS+S  S++  FP  S +I S S RLVVRA     
Sbjct: 1   MASSSMASAATGFLLSLNVAANSTTSSASSRSTMLMFPLKSNNIGSSSSRLVVRATDEAA 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRY 120
           XXXXXXXXXXXXXXXXXXXXXXXX GPKRG+KVKILR+ESYWYK  GSVV VDQDP TRY
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXIGPKRGSKVKILRKESYWYKGTGSVVAVDQDPKTRY 120

Query: 121 PVVVRFNKVNYASVSTNNYALDEIEEV 143
           PVVVRF KVNYA+VSTNNYALDEIEEV
Sbjct: 121 PVVVRFQKVNYANVSTNNYALDEIEEV 147

[Close]

BLAST of Carg23465 vs. TrEMBL
Match: tr|A0A059D406|A0A059D406_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B02162 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.7e-25
Identity = 88/135 (65.19%), Postives = 100/135 (74.07%), Query Frame = 0


Query: 9   IASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAA-XXXXXXXXXXXXXXXX 68
           +AS V+ PS  + +SSS   S+A+FP+++ S S + RLVVRAA              XXX
Sbjct: 6   MASFVLSPSIGSNASSSTARSIAYFPRDANSRS-ARRLVVRAAEGEAAPPAATTTEAXXX 65

Query: 69  XXXXXXXXXXXXXGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYA 128
           XXXXXXXX     GPKRGTKVKILRRESYW+KDVGSVV VDQDP TRYPVVVRF KVNYA
Sbjct: 66  XXXXXXXXKPPPIGPKRGTKVKILRRESYWFKDVGSVVAVDQDPKTRYPVVVRFQKVNYA 125

Query: 129 SVSTNNYALDEIEEV 143
           +VSTNNYALDEI EV
Sbjct: 126 NVSTNNYALDEIIEV 139

[Close]

BLAST of Carg23465 vs. TrEMBL
Match: tr|A0A2P5AKU0|A0A2P5AKU0_PARAD (Photosystem I PsaE, reaction centre subunit IV OS=Parasponia andersonii OX=3476 GN=PanWU01x14_322740 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.7e-25
Identity = 59/62 (95.16%), Postives = 60/62 (96.77%), Query Frame = 0


Query: 81  GPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIE 140
           GPKRGTKV+ILRRESYWYKDVGSVV VDQDP TRYPVVVRFNKVNYASVSTNNYALDEIE
Sbjct: 86  GPKRGTKVRILRRESYWYKDVGSVVAVDQDPKTRYPVVVRFNKVNYASVSTNNYALDEIE 145

Query: 141 EV 143
           EV
Sbjct: 146 EV 147

The following BLAST results are available for this feature:

BLAST of Carg23465 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937722.1	1.4e-49	100.00	photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita moschata...	[more]
XP_022965997.1	6.9e-49	98.60	photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita maxima]	[more]
XP_023536804.1	1.5e-48	97.90	photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita pepo sub...	[more]
XP_022144405.1	1.6e-37	76.92	photosystem I reaction center subunit IV, chloroplastic-like [Momordica charanti...	[more]
XP_022929705.1	2.5e-35	84.83	photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita moschata...	[more]

BLAST of Carg23465 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G20260.1	2.6e-26	85.48	photosystem I subunit E-2	[more]
AT4G28750.1	4.5e-26	72.06	Photosystem I reaction centre subunit IV / PsaE protein	[more]

BLAST of Carg23465 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q41229\|PSAEB_NICSY	1.5e-26	88.71	Photosystem I reaction center subunit IV B, chloroplastic OS=Nicotiana sylvestri...	[more]
sp\|Q41228\|PSAEA_NICSY	9.5e-26	88.71	Photosystem I reaction center subunit IV A, chloroplastic OS=Nicotiana sylvestri...	[more]
sp\|P12354\|PSAE_SPIOL	3.6e-25	72.44	Photosystem I reaction center subunit IV, chloroplastic OS=Spinacia oleracea OX=...	[more]
sp\|Q9S714\|PSAE2_ARATH	4.7e-25	85.48	Photosystem I reaction center subunit IV B, chloroplastic OS=Arabidopsis thalian...	[more]
sp\|Q9S831\|PSAE1_ARATH	8.1e-25	72.06	Photosystem I reaction center subunit IV A, chloroplastic OS=Arabidopsis thalian...	[more]

BLAST of Carg23465 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B3T3\|A0A1S3B3T3_CUCME	1.9e-26	96.83	photosystem I reaction center subunit IV, chloroplastic-like OS=Cucumis melo OX=...	[more]
tr\|A0A0A0LJQ1\|A0A0A0LJQ1_CUCSA	4.1e-26	95.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G079660 PE=4 SV=1	[more]
tr\|I3SXG8\|I3SXG8_MEDTR	1.6e-25	68.03	Photosystem I reaction center subunit IV A OS=Medicago truncatula OX=3880 GN=254...	[more]
tr\|A0A059D406\|A0A059D406_EUCGR	2.7e-25	65.19	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B02162 PE=4 SV...	[more]
tr\|A0A2P5AKU0\|A0A2P5AKU0_PARAD	2.7e-25	95.16	Photosystem I PsaE, reaction centre subunit IV OS=Parasponia andersonii OX=3476 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0009538	photosystem I reaction center
GO:0009522	photosystem I

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

Vocabulary: **INTERPRO**
Term	Definition
IPR008990	Elect_transpt_acc-like_dom_sf
IPR003375	PSI_PsaE

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009538	photosystem I reaction center
cellular_component	GO:0009522	photosystem I
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23465-RA	Carg23465-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003375	Photosystem I PsaE, reaction centre subunit IV	PFAM	PF02427	PSI_PsaE	coord: 83..142 e-value: 1.8E-30 score: 104.3
IPR003375	Photosystem I PsaE, reaction centre subunit IV	PANTHER	PTHR34549	FAMILY NOT NAMED	coord: 6..143
IPR003375	Photosystem I PsaE, reaction centre subunit IV	PRODOM	PD004772		coord: 89..142 e-value: 7.0E-22 score: 252.0
None	No IPR available	GENE3D	G3DSA:2.30.30.50		coord: 78..143 e-value: 9.8E-36 score: 123.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..85
None	No IPR available	PANTHER	PTHR34549:SF4	PHOTOSYSTEM I REACTION CENTER SUBUNIT IV A, CHLOROPLASTIC-RELATED	coord: 6..143
IPR008990	Electron transport accessory-like domain superfamily	SUPERFAMILY	SSF50090	Electron transport accessory proteins	coord: 82..142

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23465	Cla007871	Watermelon (97103) v1	carwmB0478
Carg23465	Csa2G079660	Cucumber (Chinese Long) v2	carcuB0514
Carg23465	MELO3C008663	Melon (DHL92) v3.5.1	carmeB0486
Carg23465	ClCG11G010230	Watermelon (Charleston Gray)	carwcgB0466
Carg23465	CSPI02G07690	Wild cucumber (PI 183967)	carcpiB0521
Carg23465	Cucsa.178170	Cucumber (Gy14) v1	carcgyB0554
Carg23465	CmaCh05G007770	Cucurbita maxima (Rimu)	carcmaB0671
Carg23465	CmaCh12G009820	Cucurbita maxima (Rimu)	carcmaB0670
Carg23465	CmoCh05G008160	Cucurbita moschata (Rifu)	carcmoB0653
Carg23465	CmoCh12G009900	Cucurbita moschata (Rifu)	carcmoB0652
Carg23465	Lsi11G009110	Bottle gourd (USVL1VR-Ls)	carlsiB436
Carg23465	Cp4.1LG11g06910	Cucurbita pepo (Zucchini)	carcpeB0675
Carg23465	Cp4.1LG07g08230	Cucurbita pepo (Zucchini)	carcpeB0676
Carg23465	CsGy2G007920	Cucumber (Gy14) v2	carcgybB0490
Carg23465	MELO3C008663.2	Melon (DHL92) v3.6.1	carmedB0492
Carg23465	CsaV3_2G010090	Cucumber (Chinese Long) v3	carcucB0519
Carg23465	Cla97C11G216530	Watermelon (97103) v2	carwmbB0505
Carg23465	Bhi06G000917	Wax gourd	carwgoB0585

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23465	Melon (DHL92) v3.5.1	carmeB0487
Carg23465	Melon (DHL92) v3.6.1	carmedB0493