Carg21424 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg21424
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS like
Location	Cucurbita_argyrosperma_scaffold_103 : 246457 .. 246996 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGCCGCCGTAGCAGCAGCCGCCGCCGCCGCCCTAGCCAGACGGAGCTCCTCCTCTTCCTCCTCGTCCACTACCTCCAACCGATCCTCCTCCGGCTCTTTCTACAGTCAATACTACCCGTCGCCCTCTGTATCGGTCCGACAGCCGCCATTGGCCAGCCGGTATGAGTGCCGGAAACGGCTAGACTGGAGTAAATTCCGGCAGTATCTGAGAAGTCGGTGCCCGACATTGAGCCTCTCCACCTGCACCGGAGCGGATATTGTCGAGTTCCTCTGCTATTTAGACGAATTCGGCGACACCAAAGTACACGCCGACACCTGCCCTAATTTCGGCCACCGCTACCCGGTCGATCCCTACTGCGATTGCCCCACACAACAACCGTGGAACAGCGTCGCCGGTCTCATCAGCCGCCTCCGCGTCGCCTTCGAGGAAAACGGCGGCAACCCAGTCACCAACCCCTTTAACGCCGTCGACGTCAAAATTTACCTCGACGACATTAAGGACTCCCAAAACAGATCCCGAGGAATTGATCGGTAA

mRNA sequence

ATGTCAGCCGCCGTAGCAGCAGCCGCCGCCGCCGCCCTAGCCAGACGGAGCTCCTCCTCTTCCTCCTCGTCCACTACCTCCAACCGATCCTCCTCCGGCTCTTTCTACAGTCAATACTACCCGTCGCCCTCTGTATCGGTCCGACAGCCGCCATTGGCCAGCCGGTATGAGTGCCGGAAACGGCTAGACTGGAGTAAATTCCGGCAGTATCTGAGAAGTCGGTGCCCGACATTGAGCCTCTCCACCTGCACCGGAGCGGATATTGTCGAGTTCCTCTGCTATTTAGACGAATTCGGCGACACCAAAGTACACGCCGACACCTGCCCTAATTTCGGCCACCGCTACCCGGTCGATCCCTACTGCGATTGCCCCACACAACAACCGTGGAACAGCGTCGCCGGTCTCATCAGCCGCCTCCGCGTCGCCTTCGAGGAAAACGGCGGCAACCCAGTCACCAACCCCTTTAACGCCGTCGACGTCAAAATTTACCTCGACGACATTAAGGACTCCCAAAACAGATCCCGAGGAATTGATCGGTAA

Coding sequence (CDS)

ATGTCAGCCGCCGTAGCAGCAGCCGCCGCCGCCGCCCTAGCCAGACGGAGCTCCTCCTCTTCCTCCTCGTCCACTACCTCCAACCGATCCTCCTCCGGCTCTTTCTACAGTCAATACTACCCGTCGCCCTCTGTATCGGTCCGACAGCCGCCATTGGCCAGCCGGTATGAGTGCCGGAAACGGCTAGACTGGAGTAAATTCCGGCAGTATCTGAGAAGTCGGTGCCCGACATTGAGCCTCTCCACCTGCACCGGAGCGGATATTGTCGAGTTCCTCTGCTATTTAGACGAATTCGGCGACACCAAAGTACACGCCGACACCTGCCCTAATTTCGGCCACCGCTACCCGGTCGATCCCTACTGCGATTGCCCCACACAACAACCGTGGAACAGCGTCGCCGGTCTCATCAGCCGCCTCCGCGTCGCCTTCGAGGAAAACGGCGGCAACCCAGTCACCAACCCCTTTAACGCCGTCGACGTCAAAATTTACCTCGACGACATTAAGGACTCCCAAAACAGATCCCGAGGAATTGATCGGTAA

Protein sequence

MSAAVAAAAAAALARRSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYECRKRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVDPYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIKDSQNRSRGIDR

Homology

[Close]

BLAST of Carg21424 vs. NCBI nr
Match: XP_022927089.1 (protein G1-like6 [Cucurbita moschata])

HSP 1 Score: 305.8 bits (782), Expect = 9.4e-80
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 40  YPSPSVSVRQPPLASRYECRKRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFG 99
           YPSPSVSVRQPPLASRYECRKRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFG
Sbjct: 41  YPSPSVSVRQPPLASRYECRKRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFG 100

Query: 100 DTKVHADTCPNFGHRYPVDPYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVD 159
           DTKVHADTCPNFGHRYPVDPYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVD
Sbjct: 101 DTKVHADTCPNFGHRYPVDPYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVD 160

Query: 160 VKIYLDDIKDSQNRSRGIDR 180
           VKIYLDDIKDSQNRSRGIDR
Sbjct: 161 VKIYLDDIKDSQNRSRGIDR 180

[Close]

BLAST of Carg21424 vs. NCBI nr
Match: XP_023519738.1 (protein G1-like6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 304.3 bits (778), Expect = 2.7e-79
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 40  YPSPSVSVRQPPLASRYECRKRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFG 99
           YPSPSVSVRQPPLASRYECRKRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFG
Sbjct: 42  YPSPSVSVRQPPLASRYECRKRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFG 101

Query: 100 DTKVHADTCPNFGHRYPVDPYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVD 159
           DTKVH DTCPNFGHRYPVDPYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVD
Sbjct: 102 DTKVHTDTCPNFGHRYPVDPYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVD 161

Query: 160 VKIYLDDIKDSQNRSRGIDR 180
           VKIYLDDIKDSQNRSRGIDR
Sbjct: 162 VKIYLDDIKDSQNRSRGIDR 181

[Close]

BLAST of Carg21424 vs. NCBI nr
Match: XP_023001367.1 (protein G1-like6 [Cucurbita maxima])

HSP 1 Score: 302.0 bits (772), Expect = 1.4e-78
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 40  YPSPSVSVRQPPLASRYECRKRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFG 99
           YPSPSVSVRQPPLASRYECRKRLDWSKFRQYLRSRCPTLSL+TCTGADIVEFLCYLDEFG
Sbjct: 42  YPSPSVSVRQPPLASRYECRKRLDWSKFRQYLRSRCPTLSLATCTGADIVEFLCYLDEFG 101

Query: 100 DTKVHADTCPNFGHRYPVDPYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVD 159
           DTKVHADTCPNFGHRYPVDPYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVD
Sbjct: 102 DTKVHADTCPNFGHRYPVDPYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVD 161

Query: 160 VKIYLDDIKDSQNRSRGIDR 180
           VKIYLD IKDSQNRSRGIDR
Sbjct: 162 VKIYLDHIKDSQNRSRGIDR 181

[Close]

BLAST of Carg21424 vs. NCBI nr
Match: XP_008459123.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucumis melo])

HSP 1 Score: 245.0 bits (624), Expect = 2.0e-61
Identity = 106/135 (78.52%), Postives = 119/135 (88.15%), Query Frame = 0


Query: 45  VSVRQPPLASRYECRKRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVH 104
           VSVR PPL SRYEC KR DW++FRQYLRSRCPTLSL+ C+GA++VEFLCYLDE G +K+H
Sbjct: 39  VSVRPPPLLSRYECLKRRDWNRFRQYLRSRCPTLSLACCSGANVVEFLCYLDELGQSKIH 98

Query: 105 ADTCPNFGHRYPVDPYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYL 164
             TCPNFG RYPVDPYCDCPTQQPW ++  LI RLRVAFEENGGNPVTNPFN VDVK+YL
Sbjct: 99  GATCPNFGQRYPVDPYCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKVYL 158

Query: 165 DDIKDSQNRSRGIDR 180
           +D+KDSQ RSRGIDR
Sbjct: 159 NDVKDSQERSRGIDR 173

[Close]

BLAST of Carg21424 vs. NCBI nr
Match: XP_004135751.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucumis sativus] >KGN65964.1 hypothetical protein Csa_1G553520 [Cucumis sativus])

HSP 1 Score: 228.0 bits (580), Expect = 2.5e-56
Identity = 100/139 (71.94%), Postives = 116/139 (83.45%), Query Frame = 0


Query: 41  PSPSVSVRQPPLASRYECRKRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGD 100
           PS SVSVR  PL SRY+C KR DW++FRQYLRSR PTLSL+ C+G+++VEFL YLD  G 
Sbjct: 41  PSVSVSVRPQPLVSRYDCLKRRDWNRFRQYLRSRSPTLSLACCSGSNVVEFLSYLDRLGQ 100

Query: 101 TKVHADTCPNFGHRYPVDPYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDV 160
           +K+H  TCP+FGHRYPVDPYCDCPTQQPW ++  LI RLRVAFEENGGNPVTNPFN V V
Sbjct: 101 SKIHGATCPSFGHRYPVDPYCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVVV 160

Query: 161 KIYLDDIKDSQNRSRGIDR 180
           K+YL+ +KDSQ  SRGIDR
Sbjct: 161 KVYLNKVKDSQETSRGIDR 179

[Close]

BLAST of Carg21424 vs. TAIR10
Match: AT1G07090.1 (Protein of unknown function (DUF640))

HSP 1 Score: 160.2 bits (404), Expect = 1.2e-39
Identity = 73/137 (53.28%), Postives = 94/137 (68.61%), Query Frame = 0


Query: 41  PSPSVSVRQPPLASRYECRKRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGD 100
           P PS     P   SRYE +KR DW+ F QYL++  P L+LS C+GA ++EFL YLD+FG 
Sbjct: 17  PGPSFVSSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGK 76

Query: 101 TKVHADTCPNFGHRYPVDPYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDV 160
           TKVH   CP FGH+ P  P C CP +Q W S+  LI RLR A+EENGG P +NPF A  V
Sbjct: 77  TKVHVAACPYFGHQQPPSP-CSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAV 136

Query: 161 KIYLDDIKDSQNRSRGI 178
           +IYL ++++SQ ++RGI
Sbjct: 137 RIYLREVRESQAKARGI 152

[Close]

BLAST of Carg21424 vs. TAIR10
Match: AT3G23290.2 (Protein of unknown function (DUF640))

HSP 1 Score: 156.4 bits (394), Expect = 1.7e-38
Identity = 73/124 (58.87%), Postives = 90/124 (72.58%), Query Frame = 0


Query: 54  SRYECRKRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADTCPNFGH 113
           SRYE +KR DW+ F QYLR+  P LSLS C+GA ++EFL YLD+FG TKVH   CP FGH
Sbjct: 47  SRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGH 106

Query: 114 RYPVDPYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIKDSQNR 173
             P  P C CP +Q W S+  LI RLR AFEENGG+P TNPF A  V++YL +++DSQ +
Sbjct: 107 PNPPAP-CACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAK 166

Query: 174 SRGI 178
           +RGI
Sbjct: 167 ARGI 169

[Close]

BLAST of Carg21424 vs. TAIR10
Match: AT5G58500.1 (Protein of unknown function (DUF640))

HSP 1 Score: 140.2 bits (352), Expect = 1.2e-33
Identity = 68/125 (54.40%), Postives = 86/125 (68.80%), Query Frame = 0


Query: 54  SRYECRKRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADTCPNFGH 113
           SRYE +KR DW+ F QYLR+  P L+LS C+GA ++EFL YLD+FG TKVHA  CP FG 
Sbjct: 18  SRYESQKRRDWNTFLQYLRNHKPPLNLSRCSGAHVLEFLKYLDQFGKTKVHATACPFFGQ 77

Query: 114 RYPVDPYCDCPTQQPWNSVAGLISRLRVAFEE-NGGNPVTNPFNAVDVKIYLDDIKDSQN 173
             P    C CP +Q W S+  LI RLR AFEE  GG P +NPF A  V+IYL +++ +Q 
Sbjct: 78  PNP-PSQCTCPLKQAWGSLDALIGRLRAAFEEIGGGLPESNPFAAKAVRIYLKEVRQTQA 137

Query: 174 RSRGI 178
           ++RGI
Sbjct: 138 KARGI 141

[Close]

BLAST of Carg21424 vs. TAIR10
Match: AT2G31160.1 (Protein of unknown function (DUF640))

HSP 1 Score: 136.3 bits (342), Expect = 1.8e-32
Identity = 64/125 (51.20%), Postives = 85/125 (68.00%), Query Frame = 0


Query: 53  ASRYECRKRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADTCPNFG 112
           +SRYE +KR DW+ F QYLR+  P LSLS C+GA ++EFL YLD+FG TKVH + C  +G
Sbjct: 52  SSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTNICHFYG 111

Query: 113 HRYPVDPYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIKDSQN 172
           H            +Q W S+  LI RLR AFEENGG P TNPF A  V++YL +++D Q+
Sbjct: 112 HP-XXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRDMQS 171

Query: 173 RSRGI 178
           ++RG+
Sbjct: 172 KARGV 175

[Close]

BLAST of Carg21424 vs. TAIR10
Match: AT3G04510.1 (Protein of unknown function (DUF640))

HSP 1 Score: 133.3 bits (334), Expect = 1.5e-31
Identity = 64/132 (48.48%), Postives = 87/132 (65.91%), Query Frame = 0


Query: 46  SVRQPPLASRYECRKRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHA 105
           S   PP +SRYE +KR DW+ F QYLR+  P LSL++C+GA +++FL YLD+FG TKVH 
Sbjct: 24  SFSSPPSSSRYENQKRRDWNTFCQYLRNHHPPLSLASCSGAHVLDFLRYLDQFGKTKVHH 83

Query: 106 DTCPNFGHRYPVDPYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLD 165
             C  FG   P         +Q W S+  LI RLR A+EENGG P T+PF +  V+I+L 
Sbjct: 84  QNCAFFGLPNP-PAXXXXXLRQAWGSLDALIGRLRAAYEENGGAPETSPFGSRSVRIFLR 143

Query: 166 DIKDSQNRSRGI 178
           +++D Q +SRG+
Sbjct: 144 EVRDFQAKSRGV 154

[Close]

BLAST of Carg21424 vs. Swiss-Prot
Match: sp|Q9LMK2|LSH6_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana OX=3702 GN=LSH6 PE=1 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.1e-38
Identity = 73/137 (53.28%), Postives = 94/137 (68.61%), Query Frame = 0


Query: 41  PSPSVSVRQPPLASRYECRKRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGD 100
           P PS     P   SRYE +KR DW+ F QYL++  P L+LS C+GA ++EFL YLD+FG 
Sbjct: 17  PGPSFVSSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGK 76

Query: 101 TKVHADTCPNFGHRYPVDPYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDV 160
           TKVH   CP FGH+ P  P C CP +Q W S+  LI RLR A+EENGG P +NPF A  V
Sbjct: 77  TKVHVAACPYFGHQQPPSP-CSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAV 136

Query: 161 KIYLDDIKDSQNRSRGI 178
           +IYL ++++SQ ++RGI
Sbjct: 137 RIYLREVRESQAKARGI 152

[Close]

BLAST of Carg21424 vs. Swiss-Prot
Match: sp|Q9LW68|LSH4_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 3.0e-37
Identity = 73/124 (58.87%), Postives = 90/124 (72.58%), Query Frame = 0


Query: 54  SRYECRKRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADTCPNFGH 113
           SRYE +KR DW+ F QYLR+  P LSLS C+GA ++EFL YLD+FG TKVH   CP FGH
Sbjct: 47  SRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGH 106

Query: 114 RYPVDPYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIKDSQNR 173
             P  P C CP +Q W S+  LI RLR AFEENGG+P TNPF A  V++YL +++DSQ +
Sbjct: 107 PNPPAP-CACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAK 166

Query: 174 SRGI 178
           +RGI
Sbjct: 167 ARGI 169

[Close]

BLAST of Carg21424 vs. Swiss-Prot
Match: sp|A2XED8|G1L7_ORYSI (Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.4e-34
Identity = 70/130 (53.85%), Postives = 91/130 (70.00%), Query Frame = 0


Query: 49  QPPL-ASRYECRKRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADT 108
           QPP   SRYE +KR DW+ F QYLR+  P L+L+ C+GA ++EFL YLD+FG TKVHA  
Sbjct: 24  QPPAQLSRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEFLRYLDQFGKTKVHASG 83

Query: 109 CPNFGHRYPVDPYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDI 168
           C  +G   P  P C CP +Q W S+  LI RLR A+EE+GG P +NPF A  V+IYL ++
Sbjct: 84  CAFYGQPSPPGP-CPCPLRQAWGSLDALIGRLRAAYEESGGTPESNPFAARAVRIYLREV 143

Query: 169 KDSQNRSRGI 178
           +DSQ ++RGI
Sbjct: 144 RDSQAKARGI 152

[Close]

BLAST of Carg21424 vs. Swiss-Prot
Match: sp|Q941W1|G1L7_ORYSJ (Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.4e-34
Identity = 70/130 (53.85%), Postives = 91/130 (70.00%), Query Frame = 0


Query: 49  QPPL-ASRYECRKRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADT 108
           QPP   SRYE +KR DW+ F QYLR+  P L+L+ C+GA ++EFL YLD+FG TKVHA  
Sbjct: 24  QPPAQLSRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEFLRYLDQFGKTKVHASG 83

Query: 109 CPNFGHRYPVDPYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDI 168
           C  +G   P  P C CP +Q W S+  LI RLR A+EE+GG P +NPF A  V+IYL ++
Sbjct: 84  CAFYGQPSPPGP-CPCPLRQAWGSLDALIGRLRAAYEESGGTPESNPFAARAVRIYLREV 143

Query: 169 KDSQNRSRGI 178
           +DSQ ++RGI
Sbjct: 144 RDSQAKARGI 152

[Close]

BLAST of Carg21424 vs. Swiss-Prot
Match: sp|A2Y3I2|G1L9_ORYSI (Protein G1-like9 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_19565 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 7.0e-34
Identity = 67/124 (54.03%), Postives = 88/124 (70.97%), Query Frame = 0


Query: 54  SRYECRKRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADTCPNFGH 113
           SRYE +KR DW+ F QYLR+  P L+L  C+GA ++EFL YLD+FG TKVHAD C  FG 
Sbjct: 66  SRYESQKRRDWNTFLQYLRNHKPPLTLPRCSGAHVIEFLKYLDQFGKTKVHADGCAYFGE 125

Query: 114 RYPVDPYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIKDSQNR 173
             P  P C CP +Q W S+  LI RLR A+EE+GG P +NPF A  V+IYL +++++Q +
Sbjct: 126 PNPPAP-CACPLRQAWGSLDALIGRLRAAYEESGGRPESNPFAARAVRIYLREVREAQAK 185

Query: 174 SRGI 178
           +RGI
Sbjct: 186 ARGI 188

[Close]

BLAST of Carg21424 vs. TrEMBL
Match: tr|A0A1S3C9J9|A0A1S3C9J9_CUCME (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo OX=3656 GN=LOC103498324 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.3e-61
Identity = 106/135 (78.52%), Postives = 119/135 (88.15%), Query Frame = 0


Query: 45  VSVRQPPLASRYECRKRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVH 104
           VSVR PPL SRYEC KR DW++FRQYLRSRCPTLSL+ C+GA++VEFLCYLDE G +K+H
Sbjct: 39  VSVRPPPLLSRYECLKRRDWNRFRQYLRSRCPTLSLACCSGANVVEFLCYLDELGQSKIH 98

Query: 105 ADTCPNFGHRYPVDPYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYL 164
             TCPNFG RYPVDPYCDCPTQQPW ++  LI RLRVAFEENGGNPVTNPFN VDVK+YL
Sbjct: 99  GATCPNFGQRYPVDPYCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKVYL 158

Query: 165 DDIKDSQNRSRGIDR 180
           +D+KDSQ RSRGIDR
Sbjct: 159 NDVKDSQERSRGIDR 173

[Close]

BLAST of Carg21424 vs. TrEMBL
Match: tr|A0A0A0LY69|A0A0A0LY69_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G553520 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 1.7e-56
Identity = 100/139 (71.94%), Postives = 116/139 (83.45%), Query Frame = 0


Query: 41  PSPSVSVRQPPLASRYECRKRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGD 100
           PS SVSVR  PL SRY+C KR DW++FRQYLRSR PTLSL+ C+G+++VEFL YLD  G 
Sbjct: 41  PSVSVSVRPQPLVSRYDCLKRRDWNRFRQYLRSRSPTLSLACCSGSNVVEFLSYLDRLGQ 100

Query: 101 TKVHADTCPNFGHRYPVDPYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDV 160
           +K+H  TCP+FGHRYPVDPYCDCPTQQPW ++  LI RLRVAFEENGGNPVTNPFN V V
Sbjct: 101 SKIHGATCPSFGHRYPVDPYCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVVV 160

Query: 161 KIYLDDIKDSQNRSRGIDR 180
           K+YL+ +KDSQ  SRGIDR
Sbjct: 161 KVYLNKVKDSQETSRGIDR 179

[Close]

BLAST of Carg21424 vs. TrEMBL
Match: tr|A0A1Q3BCB3|A0A1Q3BCB3_CEPFO (DUF640 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_09123 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.1e-36
Identity = 76/135 (56.30%), Postives = 97/135 (71.85%), Query Frame = 0


Query: 43  PSVSVRQPPLASRYECRKRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTK 102
           P  S  QP L SRYE +KR DW+ F QYLR+  P L+LS C+GA ++EFL YLD+FG TK
Sbjct: 38  PPPSPPQPQL-SRYESQKRRDWNTFGQYLRNHRPPLALSRCSGAHVLEFLKYLDQFGKTK 97

Query: 103 VHADTCPNFGHRYPVDPYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKI 162
           VHA TCP FGH +P  P C CP +Q W S+  L+ RLR AFEENGG+P TNPF A  V++
Sbjct: 98  VHAQTCPFFGHLHPPAP-CSCPLKQAWGSLDALVGRLRAAFEENGGHPETNPFGARAVRL 157

Query: 163 YLDDIKDSQNRSRGI 178
           YL ++++ Q ++RGI
Sbjct: 158 YLREVREDQAKARGI 170

[Close]

BLAST of Carg21424 vs. TrEMBL
Match: tr|A0A178WE41|A0A178WE41_ARATH (LSH6 OS=Arabidopsis thaliana OX=3702 GN=AXX17_At1g06720 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 4.2e-36
Identity = 73/137 (53.28%), Postives = 94/137 (68.61%), Query Frame = 0


Query: 41  PSPSVSVRQPPLASRYECRKRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGD 100
           P PS     P   SRYE +KR DW+ F QYL++  P L+LS C+GA ++EFL YLD+FG 
Sbjct: 17  PGPSFVSSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGK 76

Query: 101 TKVHADTCPNFGHRYPVDPYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDV 160
           TKVH   CP FGH+ P  P C CP +Q W S+  LI RLR A+EENGG P +NPF A  V
Sbjct: 77  TKVHVAACPYFGHQQPPSP-CSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAV 136

Query: 161 KIYLDDIKDSQNRSRGI 178
           +IYL ++++SQ ++RGI
Sbjct: 137 RIYLREVRESQAKARGI 152

[Close]

BLAST of Carg21424 vs. TrEMBL
Match: tr|A0A087HLM1|A0A087HLM1_ARAAL (Uncharacterized protein OS=Arabis alpina OX=50452 GN=AALP_AA1G068900 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 7.2e-36
Identity = 73/137 (53.28%), Postives = 94/137 (68.61%), Query Frame = 0


Query: 41  PSPSVSVRQPPLASRYECRKRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGD 100
           P PS     P   SRYE +KR DW+ F QYL++  P L+LS C+GA ++EFL YLD+FG 
Sbjct: 19  PGPSFVSSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGK 78

Query: 101 TKVHADTCPNFGHRYPVDPYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDV 160
           TKVH   CP FGH+ P  P C CP +Q W S+  LI RLR A+EENGG P +NPF A  V
Sbjct: 79  TKVHVAACPYFGHQQPPSP-CACPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAV 138

Query: 161 KIYLDDIKDSQNRSRGI 178
           +IYL ++++SQ ++RGI
Sbjct: 139 RIYLREVRESQAKARGI 154

The following BLAST results are available for this feature:

BLAST of Carg21424 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022927089.1	9.4e-80	100.00	protein G1-like6 [Cucurbita moschata]	[more]
XP_023519738.1	2.7e-79	99.29	protein G1-like6 [Cucurbita pepo subsp. pepo]	[more]
XP_023001367.1	1.4e-78	98.57	protein G1-like6 [Cucurbita maxima]	[more]
XP_008459123.1	2.0e-61	78.52	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucumis melo]	[more]
XP_004135751.1	2.5e-56	71.94	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucumis sativus] >KG...	[more]

BLAST of Carg21424 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G07090.1	1.2e-39	53.28	Protein of unknown function (DUF640)	[more]
AT3G23290.2	1.7e-38	58.87	Protein of unknown function (DUF640)	[more]
AT5G58500.1	1.2e-33	54.40	Protein of unknown function (DUF640)	[more]
AT2G31160.1	1.8e-32	51.20	Protein of unknown function (DUF640)	[more]
AT3G04510.1	1.5e-31	48.48	Protein of unknown function (DUF640)	[more]

BLAST of Carg21424 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LMK2\|LSH6_ARATH	2.1e-38	53.28	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
sp\|Q9LW68\|LSH4_ARATH	3.0e-37	58.87	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
sp\|A2XED8\|G1L7_ORYSI	1.4e-34	53.85	Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1	[more]
sp\|Q941W1\|G1L7_ORYSJ	1.4e-34	53.85	Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1	[more]
sp\|A2Y3I2\|G1L9_ORYSI	7.0e-34	54.03	Protein G1-like9 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_19565 PE=3 SV=1	[more]

BLAST of Carg21424 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C9J9\|A0A1S3C9J9_CUCME	1.3e-61	78.52	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0LY69\|A0A0A0LY69_CUCSA	1.7e-56	71.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G553520 PE=4 SV=1	[more]
tr\|A0A1Q3BCB3\|A0A1Q3BCB3_CEPFO	1.1e-36	56.30	DUF640 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_0...	[more]
tr\|A0A178WE41\|A0A178WE41_ARATH	4.2e-36	53.28	LSH6 OS=Arabidopsis thaliana OX=3702 GN=AXX17_At1g06720 PE=4 SV=1	[more]
tr\|A0A087HLM1\|A0A087HLM1_ARAAL	7.2e-36	53.28	Uncharacterized protein OS=Arabis alpina OX=50452 GN=AALP_AA1G068900 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006936	ALOG_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21424-RA	Carg21424-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 47..169 e-value: 2.4E-41 score: 140.7
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 55..179 score: 38.128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..35
None	No IPR available	PANTHER	PTHR31165:SF36	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 3	coord: 4..177
None	No IPR available	PANTHER	PTHR31165	FAMILY NOT NAMED	coord: 4..177

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg21424	Cla019758	Watermelon (97103) v1	carwmB0393
Carg21424	Csa1G553520	Cucumber (Chinese Long) v2	carcuB0426
Carg21424	MELO3C021818	Melon (DHL92) v3.5.1	carmeB0400
Carg21424	ClCG03G008600	Watermelon (Charleston Gray)	carwcgB0393
Carg21424	CSPI01G25370	Wild cucumber (PI 183967)	carcpiB0430
Carg21424	Cucsa.167520	Cucumber (Gy14) v1	carcgyB0462
Carg21424	CmaCh13G004610	Cucurbita maxima (Rimu)	carcmaB0551
Carg21424	CmoCh13G004950	Cucurbita moschata (Rifu)	carcmoB0536
Carg21424	Lsi02G009970	Bottle gourd (USVL1VR-Ls)	carlsiB362
Carg21424	Cp4.1LG09g07120	Cucurbita pepo (Zucchini)	carcpeB0551
Carg21424	Cp4.1LG20g05800	Cucurbita pepo (Zucchini)	carcpeB0553
Carg21424	CsGy1G024780	Cucumber (Gy14) v2	carcgybB0404
Carg21424	MELO3C021818.2	Melon (DHL92) v3.6.1	carmedB0404
Carg21424	CsaV3_1G037700	Cucumber (Chinese Long) v3	carcucB0428
Carg21424	Cla97C01G025530	Watermelon (97103) v2	carwmbB0422
Carg21424	Cla97C03G059860	Watermelon (97103) v2	carwmbB0423
Carg21424	Bhi08G000798	Wax gourd	carwgoB0484

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg21424	Carg25396	Silver-seed gourd	carcarB420

The following block(s) are covering this gene:


Gene	Organism	Block
Carg21424	Silver-seed gourd	carcarB421
Carg21424	Cucumber (Gy14) v1	carcgyB0461
Carg21424	Cucurbita maxima (Rimu)	carcmaB0552
Carg21424	Cucurbita maxima (Rimu)	carcmaB0554
Carg21424	Cucurbita moschata (Rifu)	carcmoB0537
Carg21424	Cucurbita moschata (Rifu)	carcmoB0539
Carg21424	Cucurbita pepo (Zucchini)	carcpeB0552
Carg21424	Wild cucumber (PI 183967)	carcpiB0434
Carg21424	Cucumber (Chinese Long) v2	carcuB0430
Carg21424	Cucumber (Chinese Long) v3	carcucB0432
Carg21424	Melon (DHL92) v3.5.1	carmeB0401
Carg21424	Melon (DHL92) v3.6.1	carmedB0406
Carg21424	Watermelon (Charleston Gray)	carwcgB0391
Carg21424	Watermelon (97103) v1	carwmB0396
Carg21424	Wax gourd	carwgoB0483