Csa1G553520 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G553520
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Light-dependent short hypocotyls 1; contains IPR006936 (Domain of unknown function DUF640)
Location	Chr1 : 20167634 .. 20168762 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTCACCTTCTTCTTCTTCTTCTTCTTCTCCTCCTCTCTTCCCCATTTTTCCAAACAATAACTCTCTGCTTTTTCCTTGCCATGTCAGCCGCCGTCGCTGCCGCTGCCGCCGCTGCCCTCTCCCGTCGAACCTCCTCCTCCTCCTCTTCCTCCACCACCATCACCCGTTCCTCTTCCGATTCTTTCTACTCCCACTACTACCCCTCCGTTTCCGTGTCGGTTCGACCACAGCCATTGGTCAGCCGCTACGACTGCCTCAAACGTCGTGACTGGAATAGGTTCCGCCAGTACCTGAGAAGCCGCAGTCCGACATTGAGCCTCGCCTGTTGCAGTGGATCGAATGTCGTCGAGTTTCTCTCTTATCTCGACCGACTAGGGCAGAGTAAAATTCATGGCGCCACCTGCCCTAGTTTCGGCCACCGTTACCCGGTGGATCCTTACTGCGATTGCCCAACTCAACAGCCCTGGACTACTCTCGTTGCTCTCATCGGCCGACTCCGTGTCGCGTTTGAGGAAAACGGCGGAAATCCAGTGACGAATCCATTTAACACCGTCGTCGTCAAAGTTTATCTCAACAAAGTTAAGGATTCTCAAGAAACATCCCGAGGAATTGATCGGTAAGAAAAAGAAAGGGATTAAGGATGAAAATTGAATTTGCTCTGCTATATTCGACGCCGAGCTCGGTGTCTATGGCGGATTCTGAACAATCATCGACGCAACTGACGTGAAAAATTTGAAGACTGTGAGGAGTTTTGGATATATTTGGATTAAAAGGATTTGATGACACTCCCAAGAAGAATTTAACTGATAAAAATGCTTAATTTTGGGGGTTTTTTTTTGTACAAATTAAAGAACTTCTAGTGGCTTATAGTGGAAATGGACTGTTGGGATTGAGAATATTTAGAGAAAGAAAAAATGGGTTTGTTGATTTCTTTGTTTGTATTAAAATAAAATTAGTGAATTGAAGTGGAAATTAAAATTTGATGAAATGGGTATTGTTTTTGTTATAAATTTGTGTAAAGAGTAAAGAGGATTGATTGTGCTTTTTTTAGGTCATGATGTGAATTGAAGTTGGGGATAAAAGAAAAAGAAATTCCTTTGATTATGAAAAAGGAAGATAAGAAAAATG

mRNA sequence

ATGTCAGCCGCCGTCGCTGCCGCTGCCGCCGCTGCCCTCTCCCGTCGAACCTCCTCCTCCTCCTCTTCCTCCACCACCATCACCCGTTCCTCTTCCGATTCTTTCTACTCCCACTACTACCCCTCCGTTTCCGTGTCGGTTCGACCACAGCCATTGGTCAGCCGCTACGACTGCCTCAAACGTCGTGACTGGAATAGGTTCCGCCAGTACCTGAGAAGCCGCAGTCCGACATTGAGCCTCGCCTGTTGCAGTGGATCGAATGTCGTCGAGTTTCTCTCTTATCTCGACCGACTAGGGCAGAGTAAAATTCATGGCGCCACCTGCCCTAGTTTCGGCCACCGTTACCCGGTGGATCCTTACTGCGATTGCCCAACTCAACAGCCCTGGACTACTCTCGTTGCTCTCATCGGCCGACTCCGTGTCGCGTTTGAGGAAAACGGCGGAAATCCAGTGACGAATCCATTTAACACCGTCGTCGTCAAAGTTTATCTCAACAAAGTTAAGGATTCTCAAGAAACATCCCGAGGAATTGATCGGTAA

Coding sequence (CDS)

ATGTCAGCCGCCGTCGCTGCCGCTGCCGCCGCTGCCCTCTCCCGTCGAACCTCCTCCTCCTCCTCTTCCTCCACCACCATCACCCGTTCCTCTTCCGATTCTTTCTACTCCCACTACTACCCCTCCGTTTCCGTGTCGGTTCGACCACAGCCATTGGTCAGCCGCTACGACTGCCTCAAACGTCGTGACTGGAATAGGTTCCGCCAGTACCTGAGAAGCCGCAGTCCGACATTGAGCCTCGCCTGTTGCAGTGGATCGAATGTCGTCGAGTTTCTCTCTTATCTCGACCGACTAGGGCAGAGTAAAATTCATGGCGCCACCTGCCCTAGTTTCGGCCACCGTTACCCGGTGGATCCTTACTGCGATTGCCCAACTCAACAGCCCTGGACTACTCTCGTTGCTCTCATCGGCCGACTCCGTGTCGCGTTTGAGGAAAACGGCGGAAATCCAGTGACGAATCCATTTAACACCGTCGTCGTCAAAGTTTATCTCAACAAAGTTAAGGATTCTCAAGAAACATCCCGAGGAATTGATCGGTAA

Protein sequence

MSAAVAAAAAAALSRRTSSSSSSSTTITRSSSDSFYSHYYPSVSVSVRPQPLVSRYDCLKRRDWNRFRQYLRSRSPTLSLACCSGSNVVEFLSYLDRLGQSKIHGATCPSFGHRYPVDPYCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVVVKVYLNKVKDSQETSRGIDR*

Homology

[Close]

BLAST of Csa1G553520 vs. Swiss-Prot
Match: LSH4_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana GN=LSH4 PE=1 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.0e-37
Identity = 85/169 (50.30%), Postives = 107/169 (63.31%), Query Frame = 1


Query: 9   AAAALSRRTSSSSSSSTTITRSSSDSFYSHYYPSVSVSVRPQPLVSRYDCLKRRDWNRFR 68
           AAAA +  TSSSSSSS+  + ++                     +SRY+  KRRDWN F 
Sbjct: 22  AAAATTTTTSSSSSSSSGGSGTNQ--------------------LSRYENQKRRDWNTFG 81

Query: 69  QYLRSRSPTLSLACCSGSNVVEFLSYLDRLGQSKIHGATCPSFGHRYPVDPYCDCPTQQP 128
           QYLR+  P LSL+ CSG++V+EFL YLD+ G++K+H   CP FGH  P  P C CP +Q 
Sbjct: 82  QYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAP-CACPLRQA 141

Query: 129 WTTLVALIGRLRVAFEENGGNPVTNPFNTVVVKVYLNKVKDSQETSRGI 178
           W +L ALIGRLR AFEENGG+P TNPF    V++YL +V+DSQ  +RGI
Sbjct: 142 WGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGI 169

[Close]

BLAST of Csa1G553520 vs. Swiss-Prot
Match: LSH6_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana GN=LSH6 PE=1 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 6.7e-37
Identity = 72/137 (52.55%), Postives = 93/137 (67.88%), Query Frame = 1


Query: 41  PSVSVSVRPQPLVSRYDCLKRRDWNRFRQYLRSRSPTLSLACCSGSNVVEFLSYLDRLGQ 100
           P  S    P    SRY+  KRRDWN F QYL++  P L+L+ CSG++V+EFL YLD+ G+
Sbjct: 17  PGPSFVSSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGK 76

Query: 101 SKIHGATCPSFGHRYPVDPYCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVVV 160
           +K+H A CP FGH+ P  P C CP +Q W +L ALIGRLR A+EENGG P +NPF    V
Sbjct: 77  TKVHVAACPYFGHQQPPSP-CSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAV 136

Query: 161 KVYLNKVKDSQETSRGI 178
           ++YL +V++SQ  +RGI
Sbjct: 137 RIYLREVRESQAKARGI 152

[Close]

BLAST of Csa1G553520 vs. Swiss-Prot
Match: G1L6_ORYSI (Protein G1-like6 OS=Oryza sativa subsp. indica GN=OsI_09389 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.1e-36
Identity = 82/170 (48.24%), Postives = 105/170 (61.76%), Query Frame = 1


Query: 8   AAAAALSRRTSSSSSSSTTITRSSSDSFYSHYYPSVSVSVRPQPLVSRYDCLKRRDWNRF 67
           AAAA  S   SSSS + T+              PS S S    P +SRY+  KRRDWN F
Sbjct: 43  AAAAMFSGAGSSSSGAGTSAGGGGGG-------PSPSSS---SPSLSRYESQKRRDWNTF 102

Query: 68  RQYLRSRSPTLSLACCSGSNVVEFLSYLDRLGQSKIHGATCPSFGHRYPVDPYCDCPTQQ 127
            QYLR+  P LSL+ CSG++V+EFL Y+D+ G++K+H   CP +GH  P  P C CP +Q
Sbjct: 103 GQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKTKVHTPVCPFYGHPNPPAP-CPCPLRQ 162

Query: 128 PWTTLVALIGRLRVAFEENGGNPVTNPFNTVVVKVYLNKVKDSQETSRGI 178
            W +L ALIGRLR A+EENGG P  NPF    V++YL +V+++Q  +RGI
Sbjct: 163 AWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYLREVRETQARARGI 201

[Close]

BLAST of Csa1G553520 vs. Swiss-Prot
Match: G1L6_ORYSJ (Protein G1-like6 OS=Oryza sativa subsp. japonica GN=G1L6 PE=1 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.1e-36
Identity = 82/170 (48.24%), Postives = 105/170 (61.76%), Query Frame = 1


Query: 8   AAAAALSRRTSSSSSSSTTITRSSSDSFYSHYYPSVSVSVRPQPLVSRYDCLKRRDWNRF 67
           AAAA  S   SSSS + T+              PS S S    P +SRY+  KRRDWN F
Sbjct: 43  AAAAMFSGAGSSSSGAGTSAGGGGGG-------PSPSSS---SPSLSRYESQKRRDWNTF 102

Query: 68  RQYLRSRSPTLSLACCSGSNVVEFLSYLDRLGQSKIHGATCPSFGHRYPVDPYCDCPTQQ 127
            QYLR+  P LSL+ CSG++V+EFL Y+D+ G++K+H   CP +GH  P  P C CP +Q
Sbjct: 103 GQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKTKVHTPVCPFYGHPNPPAP-CPCPLRQ 162

Query: 128 PWTTLVALIGRLRVAFEENGGNPVTNPFNTVVVKVYLNKVKDSQETSRGI 178
            W +L ALIGRLR A+EENGG P  NPF    V++YL +V+++Q  +RGI
Sbjct: 163 AWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYLREVRETQARARGI 201

[Close]

BLAST of Csa1G553520 vs. Swiss-Prot
Match: G1L4_ORYSI (Protein G1-like4 OS=Oryza sativa subsp. indica GN=OsI_16643 PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 3.3e-36
Identity = 74/141 (52.48%), Postives = 94/141 (66.67%), Query Frame = 1


Query: 37  SHYYPSVSVSVRPQPLVSRYDCLKRRDWNRFRQYLRSRSPTLSLACCSGSNVVEFLSYLD 96
           S+  PS+       P  SRY+  KRRDWN F QYLR+  P LSLA CSG++V+EFL YLD
Sbjct: 25  SNSSPSMGAGAPQSP--SRYEAQKRRDWNTFGQYLRNHRPPLSLAQCSGAHVLEFLRYLD 84

Query: 97  RLGQSKIHGATCPSFGHRYPVDPYCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFN 156
           + G++K+H A CP FGH  P  P C CP +Q W +L AL+GRLR AFEENGG P +NPF 
Sbjct: 85  QFGKTKVHTAACPFFGHPSPPAP-CPCPLRQAWGSLDALVGRLRAAFEENGGRPESNPFA 144

Query: 157 TVVVKVYLNKVKDSQETSRGI 178
              V++YL +V++ Q  +RG+
Sbjct: 145 ARAVRLYLREVREHQARARGV 162

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BLAST of Csa1G553520 vs. TrEMBL
Match: A0A0A0LY69_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G553520 PE=4 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 6.2e-98
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1


Query: 1   MSAAVAAAAAAALSRRTSSSSSSSTTITRSSSDSFYSHYYPSVSVSVRPQPLVSRYDCLK 60
           MSAAVAAAAAAALSRRTSSSSSSSTTITRSSSDSFYSHYYPSVSVSVRPQPLVSRYDCLK
Sbjct: 1   MSAAVAAAAAAALSRRTSSSSSSSTTITRSSSDSFYSHYYPSVSVSVRPQPLVSRYDCLK 60

Query: 61  RRDWNRFRQYLRSRSPTLSLACCSGSNVVEFLSYLDRLGQSKIHGATCPSFGHRYPVDPY 120
           RRDWNRFRQYLRSRSPTLSLACCSGSNVVEFLSYLDRLGQSKIHGATCPSFGHRYPVDPY
Sbjct: 61  RRDWNRFRQYLRSRSPTLSLACCSGSNVVEFLSYLDRLGQSKIHGATCPSFGHRYPVDPY 120

Query: 121 CDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVVVKVYLNKVKDSQETSRGIDR 180
           CDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVVVKVYLNKVKDSQETSRGIDR
Sbjct: 121 CDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVVVKVYLNKVKDSQETSRGIDR 179

[Close]

BLAST of Csa1G553520 vs. TrEMBL
Match: M5WII3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010212mg PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 6.3e-42
Identity = 94/182 (51.65%), Postives = 126/182 (69.23%), Query Frame = 1


Query: 1   MSAAVAAAAAAALSRRTSSSSSSSTTITRSSSDSFYSH----YYPSVSVSVRP-QPLVSR 60
           MSAA AAAAAAA+ R      SSSTT + S +D+++ H    + P V+ S+   QP++SR
Sbjct: 1   MSAAAAAAAAAAVCR------SSSTTSSSSGADNYHHHQQQQHRPLVTPSLTAAQPVLSR 60

Query: 61  YDCLKRRDWNRFRQYLRSRSPTLSLACCSGSNVVEFLSYLDRLGQSKIHGATCPSFGHRY 120
           Y+  KRRDW  F QYL++  P L+L+ CSG++V+EFL YLD+ G++K+H   CP +GH +
Sbjct: 61  YESQKRRDWITFGQYLKNHKPPLTLSRCSGAHVLEFLRYLDQFGKTKVHADVCPFYGHPH 120

Query: 121 PVDPYCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVVVKVYLNKVKDSQETSR 178
           P  P C CP +Q W +L ALIGRLR AFEENGG P TNPF    V++YL +V+DSQ  +R
Sbjct: 121 PPAP-CPCPLRQAWGSLDALIGRLRAAFEENGGQPETNPFGARAVRLYLREVRDSQAKAR 175

[Close]

BLAST of Csa1G553520 vs. TrEMBL
Match: W9R7N8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025951 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.7e-39
Identity = 92/177 (51.98%), Postives = 118/177 (66.67%), Query Frame = 1


Query: 1   MSAAVAAAAAAALSRRTSSSSSSSTTITRSSSDSFYSHYYPSVSVSVRPQPLVSRYDCLK 60
           MSAAVAAAAAAA     +SS++SS  I      S  S   PS +   +  P +SRY+  K
Sbjct: 1   MSAAVAAAAAAA---SIASSAASSDAIFNGHHQSLLS-ITPSPAPPPQQPPSLSRYESQK 60

Query: 61  RRDWNRFRQYLRSRSPTLSLACCSGSNVVEFLSYLDRLGQSKIHGATCPSFGHRYPVDPY 120
           RRDWN F QYL++  P L+L+ CSG++V+EFL YLD+ G++K+H  TCP +G   P  P 
Sbjct: 61  RRDWNTFGQYLKNHRPPLTLSRCSGAHVLEFLRYLDQFGKTKVHSDTCPFYGKPQPPAP- 120

Query: 121 CDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVVVKVYLNKVKDSQETSRGI 178
           C CP +Q W +L ALIGRLR AFEENGG P TNPF    V++YL +V+DSQ  +RGI
Sbjct: 121 CPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRDSQAKARGI 172

[Close]

BLAST of Csa1G553520 vs. TrEMBL
Match: F6HM17_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g05690 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.9e-39
Identity = 93/177 (52.54%), Postives = 121/177 (68.36%), Query Frame = 1


Query: 1   MSAAVAAAAAAALSRRTSSSSSSSTTITRSSSDSFYSHYYPSVSVSVRPQPLVSRYDCLK 60
           MSAAVAAAAAAA S    +S++SS++    + +S  S     ++V+   QP  SRY+  K
Sbjct: 1   MSAAVAAAAAAANSGSRCNSANSSSS---GNENSLLSR---QIAVTQPLQP-PSRYESQK 60

Query: 61  RRDWNRFRQYLRSRSPTLSLACCSGSNVVEFLSYLDRLGQSKIHGATCPSFGHRYPVDPY 120
           RRDWN F QYLR+  P L+L  CSG+NV+EFL YLD+ G++K+H   CP FGH +P  P 
Sbjct: 61  RRDWNTFGQYLRNHRPPLALNRCSGANVLEFLRYLDQFGKTKVHTQMCPFFGHPHPPAP- 120

Query: 121 CDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVVVKVYLNKVKDSQETSRGI 178
           C CP +Q W +L ALIGRLR AFEENGG P TNPF    V++YL +V+D+Q  +RGI
Sbjct: 121 CPCPLRQAWGSLDALIGRLRAAFEENGGPPETNPFGARAVRLYLREVRDAQAKARGI 169

[Close]

BLAST of Csa1G553520 vs. TrEMBL
Match: B9GGH2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s46470g PE=4 SV=2)

HSP 1 Score: 169.9 bits (429), Expect = 2.9e-39
Identity = 92/180 (51.11%), Postives = 119/180 (66.11%), Query Frame = 1


Query: 1   MSAAVAAAAAAALSRRTSSSSSSSTTITRS---SSDSFYSHYYPSVSVSVRPQPLVSRYD 60
           ++ AVAAAAAAA+    S+ SS S+  +RS             P   +S+ P PL SRY+
Sbjct: 50  LTPAVAAAAAAAIMSCNSARSSGSSGASRSHQLQKGLLLPSPSPPSPISI-PLPL-SRYE 109

Query: 61  CLKRRDWNRFRQYLRSRSPTLSLACCSGSNVVEFLSYLDRLGQSKIHGATCPSFGHRYPV 120
             KRRDWN F QYLR+  P L+LA CSG++V+EFL YLD+ G++K+H   CP FGH +P 
Sbjct: 110 SQKRRDWNTFGQYLRNHRPPLALARCSGAHVLEFLRYLDQFGKTKVHSENCPFFGHPHPP 169

Query: 121 DPYCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVVVKVYLNKVKDSQETSRGI 178
            P C CP +Q W +L ALIGRLR AFEENGG P TNPF    V++YL +V+D+Q  +RGI
Sbjct: 170 CP-CSCPLKQAWGSLDALIGRLRAAFEENGGLPETNPFGARAVRLYLREVRDAQSKARGI 226

[Close]

BLAST of Csa1G553520 vs. TAIR10
Match: AT3G23290.2 (AT3G23290.2 Protein of unknown function (DUF640))

HSP 1 Score: 157.9 bits (398), Expect = 5.8e-39
Identity = 85/169 (50.30%), Postives = 107/169 (63.31%), Query Frame = 1


Query: 9   AAAALSRRTSSSSSSSTTITRSSSDSFYSHYYPSVSVSVRPQPLVSRYDCLKRRDWNRFR 68
           AAAA +  TSSSSSSS+  + ++                     +SRY+  KRRDWN F 
Sbjct: 22  AAAATTTTTSSSSSSSSGGSGTNQ--------------------LSRYENQKRRDWNTFG 81

Query: 69  QYLRSRSPTLSLACCSGSNVVEFLSYLDRLGQSKIHGATCPSFGHRYPVDPYCDCPTQQP 128
           QYLR+  P LSL+ CSG++V+EFL YLD+ G++K+H   CP FGH  P  P C CP +Q 
Sbjct: 82  QYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAP-CACPLRQA 141

Query: 129 WTTLVALIGRLRVAFEENGGNPVTNPFNTVVVKVYLNKVKDSQETSRGI 178
           W +L ALIGRLR AFEENGG+P TNPF    V++YL +V+DSQ  +RGI
Sbjct: 142 WGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGI 169

[Close]

BLAST of Csa1G553520 vs. TAIR10
Match: AT1G07090.1 (AT1G07090.1 Protein of unknown function (DUF640))

HSP 1 Score: 155.2 bits (391), Expect = 3.8e-38
Identity = 72/137 (52.55%), Postives = 93/137 (67.88%), Query Frame = 1


Query: 41  PSVSVSVRPQPLVSRYDCLKRRDWNRFRQYLRSRSPTLSLACCSGSNVVEFLSYLDRLGQ 100
           P  S    P    SRY+  KRRDWN F QYL++  P L+L+ CSG++V+EFL YLD+ G+
Sbjct: 17  PGPSFVSSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGK 76

Query: 101 SKIHGATCPSFGHRYPVDPYCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVVV 160
           +K+H A CP FGH+ P  P C CP +Q W +L ALIGRLR A+EENGG P +NPF    V
Sbjct: 77  TKVHVAACPYFGHQQPPSP-CSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAV 136

Query: 161 KVYLNKVKDSQETSRGI 178
           ++YL +V++SQ  +RGI
Sbjct: 137 RIYLREVRESQAKARGI 152

[Close]

BLAST of Csa1G553520 vs. TAIR10
Match: AT2G31160.1 (AT2G31160.1 Protein of unknown function (DUF640))

HSP 1 Score: 149.1 bits (375), Expect = 2.7e-36
Identity = 78/160 (48.75%), Postives = 99/160 (61.88%), Query Frame = 1


Query: 18  SSSSSSSTTITRSSSDSFYSHYYPSVSVSVRPQPLVSRYDCLKRRDWNRFRQYLRSRSPT 77
           S++SSS T  T   +          +S S  P    SRY+  KRRDWN F QYLR+  P 
Sbjct: 24  SNNSSSVTGATGGEATQ-------PLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPP 83

Query: 78  LSLACCSGSNVVEFLSYLDRLGQSKIHGATCPSFGHRYPVDPYCDCPTQQPWTTLVALIG 137
           LSL+ CSG++V+EFL YLD+ G++K+H   C  +GH  P  P C CP +Q W +L ALIG
Sbjct: 84  LSLSRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAP-CPCPLRQAWGSLDALIG 143

Query: 138 RLRVAFEENGGNPVTNPFNTVVVKVYLNKVKDSQETSRGI 178
           RLR AFEENGG P TNPF    V++YL +V+D Q  +RG+
Sbjct: 144 RLRAAFEENGGKPETNPFGARAVRLYLREVRDMQSKARGV 175

[Close]

BLAST of Csa1G553520 vs. TAIR10
Match: AT3G04510.1 (AT3G04510.1 Protein of unknown function (DUF640))

HSP 1 Score: 141.4 bits (355), Expect = 5.6e-34
Identity = 68/127 (53.54%), Postives = 87/127 (68.50%), Query Frame = 1


Query: 51  PLVSRYDCLKRRDWNRFRQYLRSRSPTLSLACCSGSNVVEFLSYLDRLGQSKIHGATCPS 110
           P  SRY+  KRRDWN F QYLR+  P LSLA CSG++V++FL YLD+ G++K+H   C  
Sbjct: 29  PSSSRYENQKRRDWNTFCQYLRNHHPPLSLASCSGAHVLDFLRYLDQFGKTKVHHQNCAF 88

Query: 111 FGHRYPVDPYCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVVVKVYLNKVKDS 170
           FG   P  P C CP +Q W +L ALIGRLR A+EENGG P T+PF +  V+++L +V+D 
Sbjct: 89  FGLPNPPAP-CPCPLRQAWGSLDALIGRLRAAYEENGGAPETSPFGSRSVRIFLREVRDF 148

Query: 171 QETSRGI 178
           Q  SRG+
Sbjct: 149 QAKSRGV 154

[Close]

BLAST of Csa1G553520 vs. TAIR10
Match: AT5G28490.1 (AT5G28490.1 Protein of unknown function (DUF640))

HSP 1 Score: 141.4 bits (355), Expect = 5.6e-34
Identity = 70/137 (51.09%), Postives = 90/137 (65.69%), Query Frame = 1


Query: 41  PSVSVSVRPQPLVSRYDCLKRRDWNRFRQYLRSRSPTLSLACCSGSNVVEFLSYLDRLGQ 100
           P+ S  + P P  SRY+  KRRDWN F QYLR+  P LSL  CSG++V+EFL YLD+ G+
Sbjct: 12  PNSSTQLTP-PSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGK 71

Query: 101 SKIHGATCPSFGHRYPVDPYCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVVV 160
           +K+H   C  FG   P  P C CP +Q W +L ALIGRLR A+EENGG P  NPF +  V
Sbjct: 72  TKVHHQNCAFFGLPNPPAP-CPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAV 131

Query: 161 KVYLNKVKDSQETSRGI 178
           +++L +V+D Q  +RG+
Sbjct: 132 RLFLREVRDFQAKARGV 146

[Close]

BLAST of Csa1G553520 vs. NCBI nr
Match: gi|449435938|ref|XP_004135751.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucumis sativus])

HSP 1 Score: 364.8 bits (935), Expect = 8.8e-98
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1


Query: 1   MSAAVAAAAAAALSRRTSSSSSSSTTITRSSSDSFYSHYYPSVSVSVRPQPLVSRYDCLK 60
           MSAAVAAAAAAALSRRTSSSSSSSTTITRSSSDSFYSHYYPSVSVSVRPQPLVSRYDCLK
Sbjct: 1   MSAAVAAAAAAALSRRTSSSSSSSTTITRSSSDSFYSHYYPSVSVSVRPQPLVSRYDCLK 60

Query: 61  RRDWNRFRQYLRSRSPTLSLACCSGSNVVEFLSYLDRLGQSKIHGATCPSFGHRYPVDPY 120
           RRDWNRFRQYLRSRSPTLSLACCSGSNVVEFLSYLDRLGQSKIHGATCPSFGHRYPVDPY
Sbjct: 61  RRDWNRFRQYLRSRSPTLSLACCSGSNVVEFLSYLDRLGQSKIHGATCPSFGHRYPVDPY 120

Query: 121 CDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVVVKVYLNKVKDSQETSRGIDR 180
           CDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVVVKVYLNKVKDSQETSRGIDR
Sbjct: 121 CDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVVVKVYLNKVKDSQETSRGIDR 179

[Close]

BLAST of Csa1G553520 vs. NCBI nr
Match: gi|659118446|ref|XP_008459123.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucumis melo])

HSP 1 Score: 317.8 bits (813), Expect = 1.2e-83
Identity = 157/179 (87.71%), Postives = 162/179 (90.50%), Query Frame = 1


Query: 1   MSAAVAAAAAAALSRRTSSSSSSSTTITRSSSDSFYSHYYPSVSVSVRPQPLVSRYDCLK 60
           MSAAVAAAAAAAL RRTSS+S      T SSSDSFYSHYYPS SVSVRP PL+SRY+CLK
Sbjct: 1   MSAAVAAAAAAALGRRTSSTS------TPSSSDSFYSHYYPSASVSVRPPPLLSRYECLK 60

Query: 61  RRDWNRFRQYLRSRSPTLSLACCSGSNVVEFLSYLDRLGQSKIHGATCPSFGHRYPVDPY 120
           RRDWNRFRQYLRSR PTLSLACCSG+NVVEFL YLD LGQSKIHGATCP+FG RYPVDPY
Sbjct: 61  RRDWNRFRQYLRSRCPTLSLACCSGANVVEFLCYLDELGQSKIHGATCPNFGQRYPVDPY 120

Query: 121 CDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVVVKVYLNKVKDSQETSRGIDR 180
           CDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTV VKVYLN VKDSQE SRGIDR
Sbjct: 121 CDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKVYLNDVKDSQERSRGIDR 173

[Close]

BLAST of Csa1G553520 vs. NCBI nr
Match: gi|595865083|ref|XP_007211887.1| (hypothetical protein PRUPE_ppa010212mg [Prunus persica])

HSP 1 Score: 178.7 bits (452), Expect = 9.0e-42
Identity = 94/182 (51.65%), Postives = 126/182 (69.23%), Query Frame = 1


Query: 1   MSAAVAAAAAAALSRRTSSSSSSSTTITRSSSDSFYSH----YYPSVSVSVRP-QPLVSR 60
           MSAA AAAAAAA+ R      SSSTT + S +D+++ H    + P V+ S+   QP++SR
Sbjct: 1   MSAAAAAAAAAAVCR------SSSTTSSSSGADNYHHHQQQQHRPLVTPSLTAAQPVLSR 60

Query: 61  YDCLKRRDWNRFRQYLRSRSPTLSLACCSGSNVVEFLSYLDRLGQSKIHGATCPSFGHRY 120
           Y+  KRRDW  F QYL++  P L+L+ CSG++V+EFL YLD+ G++K+H   CP +GH +
Sbjct: 61  YESQKRRDWITFGQYLKNHKPPLTLSRCSGAHVLEFLRYLDQFGKTKVHADVCPFYGHPH 120

Query: 121 PVDPYCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVVVKVYLNKVKDSQETSR 178
           P  P C CP +Q W +L ALIGRLR AFEENGG P TNPF    V++YL +V+DSQ  +R
Sbjct: 121 PPAP-CPCPLRQAWGSLDALIGRLRAAFEENGGQPETNPFGARAVRLYLREVRDSQAKAR 175

[Close]

BLAST of Csa1G553520 vs. NCBI nr
Match: gi|645238460|ref|XP_008225689.1| (PREDICTED: LOW QUALITY PROTEIN: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Prunus mume])

HSP 1 Score: 177.2 bits (448), Expect = 2.6e-41
Identity = 91/182 (50.00%), Postives = 122/182 (67.03%), Query Frame = 1


Query: 1   MSAAVAAAAAAALSRRTSSSSSSSTTITRSSSDSFYSHYYPSVSVSVRPQ-----PLVSR 60
           MSAA AAAAAA + R      SSSTT + S +D+++ H+     + V P      P++SR
Sbjct: 1   MSAAAAAAAAAVVCR------SSSTTSSSSGADNYHHHHQQQHRLLVTPSLTAAPPVLSR 60

Query: 61  YDCLKRRDWNRFRQYLRSRSPTLSLACCSGSNVVEFLSYLDRLGQSKIHGATCPSFGHRY 120
           Y+  KRRDW  F QYL++  P L+L+ CSG++V+EFL YLD+ G++K+H   CP +GH +
Sbjct: 61  YESQKRRDWITFGQYLKNHKPPLTLSRCSGAHVLEFLRYLDQFGKTKVHADACPFYGHPH 120

Query: 121 PVDPYCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVVVKVYLNKVKDSQETSR 178
           P  P C CP +Q W +L ALIGRLR AFEENGG P TNPF    V++YL +V+DSQ  +R
Sbjct: 121 PPAP-CPCPLRQAWGSLDALIGRLRAAFEENGGQPETNPFGARAVRLYLREVRDSQAKAR 175

[Close]

BLAST of Csa1G553520 vs. NCBI nr
Match: gi|470115051|ref|XP_004293717.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 171.4 bits (433), Expect = 1.4e-39
Identity = 91/177 (51.41%), Postives = 122/177 (68.93%), Query Frame = 1


Query: 1   MSAAVAAAAAAALSRRTSSSSSSSTTITRSSSDSFYSHYYPSVSVSVRPQPLVSRYDCLK 60
           MSAA AAAAAA +  R+SSS+SSS+  T       +  +  + S+ V PQ  +SRY+  K
Sbjct: 1   MSAAAAAAAAAVVVSRSSSSNSSSSPETYHHLQH-HQAFMAAPSLPVAPQ--LSRYESQK 60

Query: 61  RRDWNRFRQYLRSRSPTLSLACCSGSNVVEFLSYLDRLGQSKIHGATCPSFGHRYPVDPY 120
           RRDW  F QYL++  P L+L+ CSG++V+EFL YLD+ G++K+HG+ CP +GH  P  P 
Sbjct: 61  RRDWITFGQYLKNHRPPLTLSRCSGAHVLEFLRYLDQFGKTKVHGSGCPFYGHPNPPAP- 120

Query: 121 CDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVVVKVYLNKVKDSQETSRGI 178
           C CP +Q W +L ALIGRLR AFEENGG P TNPF    V++YL +V+D+Q  +RGI
Sbjct: 121 CPCPLKQAWGSLDALIGRLRAAFEENGGLPETNPFGARAVRLYLREVRDTQAKARGI 173

The following BLAST results are available for this feature:

BLAST of Csa1G553520 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LSH4_ARATH	1.0e-37	50.30	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana GN=LSH4 PE=1 ...	[more]
LSH6_ARATH	6.7e-37	52.55	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana GN=LSH6 PE=1 ...	[more]
G1L6_ORYSI	1.1e-36	48.24	Protein G1-like6 OS=Oryza sativa subsp. indica GN=OsI_09389 PE=3 SV=1	[more]
G1L6_ORYSJ	1.1e-36	48.24	Protein G1-like6 OS=Oryza sativa subsp. japonica GN=G1L6 PE=1 SV=1	[more]
G1L4_ORYSI	3.3e-36	52.48	Protein G1-like4 OS=Oryza sativa subsp. indica GN=OsI_16643 PE=3 SV=1	[more]

BLAST of Csa1G553520 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY69_CUCSA	6.2e-98	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G553520 PE=4 SV=1	[more]
M5WII3_PRUPE	6.3e-42	51.65	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010212mg PE=4 SV=1	[more]
W9R7N8_9ROSA	1.7e-39	51.98	Uncharacterized protein OS=Morus notabilis GN=L484_025951 PE=4 SV=1	[more]
F6HM17_VITVI	2.9e-39	52.54	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g05690 PE=4 SV=...	[more]
B9GGH2_POPTR	2.9e-39	51.11	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s46470g PE=4 SV=2	[more]

BLAST of Csa1G553520 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G23290.2	5.8e-39	50.30	Protein of unknown function (DUF640)	[more]
AT1G07090.1	3.8e-38	52.55	Protein of unknown function (DUF640)	[more]
AT2G31160.1	2.7e-36	48.75	Protein of unknown function (DUF640)	[more]
AT3G04510.1	5.6e-34	53.54	Protein of unknown function (DUF640)	[more]
AT5G28490.1	5.6e-34	51.09	Protein of unknown function (DUF640)	[more]

BLAST of Csa1G553520 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449435938\|ref\|XP_004135751.1\|	8.8e-98	100.00	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucumis sativus]	[more]
gi\|659118446\|ref\|XP_008459123.1\|	1.2e-83	87.71	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucumis melo]	[more]
gi\|595865083\|ref\|XP_007211887.1\|	9.0e-42	51.65	hypothetical protein PRUPE_ppa010212mg [Prunus persica]	[more]
gi\|645238460\|ref\|XP_008225689.1\|	2.6e-41	50.00	PREDICTED: LOW QUALITY PROTEIN: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like ...	[more]
gi\|470115051\|ref\|XP_004293717.1\|	1.4e-39	51.41	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Fragaria vesca subsp...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006936	ALOG_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU103902	cucumber EST collection version 3.0	transcribed_cluster
CU104365	cucumber EST collection version 3.0	transcribed_cluster
CU108892	cucumber EST collection version 3.0	transcribed_cluster
CU163717	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G553520.1	Csa1G553520.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU103902	CU103902	transcribed_cluster
CU163717	CU163717	transcribed_cluster
CU104365	CU104365	transcribed_cluster
CU108892	CU108892	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 48..169 score: 3.0
IPR006936	ALOG domain	PROFILE	PS51697	ALOG	coord: 55..179 score: 37
None	No IPR available	PANTHER	PTHR31165	FAMILY NOT NAMED	coord: 15..177 score: 1.8
None	No IPR available	PANTHER	PTHR31165:SF4	SUBFAMILY NOT NAMED	coord: 15..177 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G553520	Cla019758	Watermelon (97103) v1	cuwmB014
Csa1G553520	MELO3C021818	Melon (DHL92) v3.5.1	cumeB031
Csa1G553520	ClCG03G008600	Watermelon (Charleston Gray)	cuwcgB042
Csa1G553520	Lsi02G009970	Bottle gourd (USVL1VR-Ls)	culsiB023
Csa1G553520	MELO3C021818.2	Melon (DHL92) v3.6.1	cumedB027
Csa1G553520	Cla97C03G059860	Watermelon (97103) v2	cuwmbB039
Csa1G553520	Bhi08G000798	Wax gourd	cuwgoB053
Csa1G553520	CSPI01G25370	Wild cucumber (PI 183967)	cpicuB001
Csa1G553520	Cucsa.167520	Cucumber (Gy14) v1	cgycuB255
Csa1G553520	CmaCh13G004610	Cucurbita maxima (Rimu)	cmacuB220
Csa1G553520	CmoCh13G004950	Cucurbita moschata (Rifu)	cmocuB205
Csa1G553520	Cp4.1LG20g05800	Cucurbita pepo (Zucchini)	cpecuB508
Csa1G553520	Cp4.1LG09g07120	Cucurbita pepo (Zucchini)	cpecuB030
Csa1G553520	CsGy1G024780	Cucumber (Gy14) v2	cgybcuB002
Csa1G553520	Carg21424	Silver-seed gourd	carcuB0426
Csa1G553520	Carg25396	Silver-seed gourd	carcuB0480

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G553520	Cucurbita maxima (Rimu)	cmacuB392
Csa1G553520	Cucurbita moschata (Rifu)	cmocuB381