Cucsa.167520 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.167520
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Light-dependent short hypocotyls protein
Location	scaffold01154 : 891704 .. 892783 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTCTTCACCTTCTCTCCCTCTTCCCTCACTTTCTTTTCATTTTTCCCTCACCTTCTTCTTCTTCTTCTTCTTCTCCTCCTCTCTTCCCCATTTTTCCAAACAATAACTCTCTGCTTTTTCCTTGCCATGTCAGCCGCCGTCGCTGCCGCTGCCGCTGCCGCCGCTGCCCTCTCCCGTCGAACCTCCTCCTCCTCCTCTTCCTCCACCACCATCACCCGTTCCTCTTCCGATTCTTTCTACTCCCACTACTACCCCTCCGTTTCCGTGTCGGTTCGACCACAGCCATTGGTCAGCCGCTACGACTGCCTCAAACGTCGTGACTGGAATAGGTTCCGCCAGTACCTGACAAGCCGCAGTCCGACATTGAGCCTCGCCTGTTGCAGTGGATTGAATGTCGTCGAGTTTCTCTCTTATCTCAACCAACTAGGGCAGAGTAAAATTCATGGCGCCACCTGCCCTAATTTCGGCCACCGTTACCCGGTGGTTCCTTACTGCGATTGCCCAACTCAACAGCCCTGGACTACTCTCGTTGCTCTCATCGGCCGACTCCGTGTCGCGTTTGAGGAAAACGGCGGAAATCCAGTGACGAATCCATTTAACACCGTCGACGTCAAACATTATCTCAACAATGTTAAGGTTTCTCAAGAAGCATCCCGAGGAATTGATCGGTAAGAAAAAGAAAGGGATTAAGGATGAAAATTGAATTTGCTCTGCTATATTCGACGCCGAGCTCGGTGTGTATGGCGGATTCTGAACAATCATCGACGCAACTGACGTGAAAAATTTGAAGACTGTGAGTAGTTTTGGATATATTTGGATTAAAAGGATTTGATGACACTCCCAAGAAGAATTTAACTGATAAAAATGCTTAATTTTGGGGTTTTTTTTtGTACAAATTAAAGAACTTCTAGTGGCTTATAGTGGAAATGGACTGTTGGGATTGAGAATATTTAGAGAAAGAAAAAATGGGTTTGTTGATTTCTTTGTTTGTATTAAAATAAAATTAGTGAATTGAAGTGGAAATTAAAATTTGATGAAATGGGTATTGTTTTTGTTATAAATTTGTGTAAAGAGTAAA

mRNA sequence

ttctcttcaccttctctccctcttccctcactttcttttcatttttcCCTCACcttcttcttcttcttcttcttctcctcctctcttcCCCATTTTTCCAAACAATAACTCTCTGCTTTTTCCTTGCCATGTCAgccgccgtcgctgccgctgccgctgccgccgctgccCTCTCCCGTCGAAcctcctcctcctcctcttcctccACCACCATCACCCGTTCCTCTTCCGATTCTTTCTACTCCCACTACTACCCCTCCGTTTCCGTGTCGGTTCGACCACAGCCATTGGTCAGCCGCTACGACTGCCTCAAACGTCGTGACTGGAATAGGTTCCGCCAGTACCTGACAAGCCGCAGTCCGACATTGAGCCTCGCCTGTTGCAGTGGATTGAATGTCGTCGAGTTTCTCTCTTATCTCAACCAACTAGGGCAGAGTAAAATTCATGGCGCCACCTGCCCTAATTTCGGCCACCGTTACCCGGTGGTTCCTTACTGCGATTGCCCAACTCAACAGCCCTGGACTACTCTCGTTGCTCTCATCGGCCGACTCCGTGTCGCGTTTGAGGAAAACGGCGGAAATCCAGTGACGAATCCATTTAACACCGTCGACGTCAAACATTATCTCAACAATGTTAAGGTTTCTCAAGAAGCATCCCGAGGAATTGATCGGTAAGAAAAAGAAAGGGATTAAGGATGAAAATTGAATTTGCTCTGCTATATTCGACGCCGAGCTCGGTGTGTATGGCGGATTCTGAACAATCATCGACGCAACTGACGTGAAAAATTTGAAGACTGTGAGTAGTTTTGGATATATTTGGATTAAAAGGATTTGATGACACTCCCAAGAAGAATTTAACTGATAAAAATGCTTAATTTTGGGGTTTTTTTTTGTACAAATTAAAGAACTTCTAGTGGCTTATAGTGGAAATGGACTGTTGGGATTGAGAATATTTAGAGAAAGAAAAAATGGGTTTGTTGATTTCTTTGTTTGTATTAAAATAAAATTAGTGAATTGAAGTGGAAATTAAAATTTGATGAAATGGGTATTGTTTTTGTTATAAATTTGTGTAAAGAGTAAA

Coding sequence (CDS)

ATGTCAGCCGCCGTCGCTGCCGCTGCCGCTGCCGCCGCTGCCCTCTCCCGTCGAACCTCCTCCTCCTCCTCTTCCTCCACCACCATCACCCGTTCCTCTTCCGATTCTTTCTACTCCCACTACTACCCCTCCGTTTCCGTGTCGGTTCGACCACAGCCATTGGTCAGCCGCTACGACTGCCTCAAACGTCGTGACTGGAATAGGTTCCGCCAGTACCTGACAAGCCGCAGTCCGACATTGAGCCTCGCCTGTTGCAGTGGATTGAATGTCGTCGAGTTTCTCTCTTATCTCAACCAACTAGGGCAGAGTAAAATTCATGGCGCCACCTGCCCTAATTTCGGCCACCGTTACCCGGTGGTTCCTTACTGCGATTGCCCAACTCAACAGCCCTGGACTACTCTCGTTGCTCTCATCGGCCGACTCCGTGTCGCGTTTGAGGAAAACGGCGGAAATCCAGTGACGAATCCATTTAACACCGTCGACGTCAAACATTATCTCAACAATGTTAAGGTTTCTCAAGAAGCATCCCGAGGAATTGATCGGTAA

Protein sequence

MSAAVAAAAAAAAALSRRTSSSSSSSTTITRSSSDSFYSHYYPSVSVSVRPQPLVSRYDCLKRRDWNRFRQYLTSRSPTLSLACCSGLNVVEFLSYLNQLGQSKIHGATCPNFGHRYPVVPYCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKHYLNNVKVSQEASRGIDR*

Homology

[Close]

BLAST of Cucsa.167520 vs. Swiss-Prot
Match: LSH4_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana GN=LSH4 PE=1 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 6.3e-35
Identity = 83/169 (49.11%), Postives = 104/169 (61.54%), Query Frame = 1


Query: 11  AAAALSRRTSSSSSSSTTITRSSSDSFYSHYYPSVSVSVRPQPLVSRYDCLKRRDWNRFR 70
           AAAA +  TSSSSSSS+  + ++                     +SRY+  KRRDWN F 
Sbjct: 22  AAAATTTTTSSSSSSSSGGSGTNQ--------------------LSRYENQKRRDWNTFG 81

Query: 71  QYLTSRSPTLSLACCSGLNVVEFLSYLNQLGQSKIHGATCPNFGHRYPVVPYCDCPTQQP 130
           QYL +  P LSL+ CSG +V+EFL YL+Q G++K+H   CP FGH  P  P C CP +Q 
Sbjct: 82  QYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAP-CACPLRQA 141

Query: 131 WTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKHYLNNVKVSQEASRGI 180
           W +L ALIGRLR AFEENGG+P TNPF    V+ YL  V+ SQ  +RGI
Sbjct: 142 WGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGI 169

[Close]

BLAST of Cucsa.167520 vs. Swiss-Prot
Match: G1L6_ORYSJ (Protein G1-like6 OS=Oryza sativa subsp. japonica GN=G1L6 PE=1 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.8e-34
Identity = 81/170 (47.65%), Postives = 102/170 (60.00%), Query Frame = 1


Query: 10  AAAAALSRRTSSSSSSSTTITRSSSDSFYSHYYPSVSVSVRPQPLVSRYDCLKRRDWNRF 69
           AAAA  S   SSSS + T+              PS S S    P +SRY+  KRRDWN F
Sbjct: 43  AAAAMFSGAGSSSSGAGTSAGGGGGG-------PSPSSS---SPSLSRYESQKRRDWNTF 102

Query: 70  RQYLTSRSPTLSLACCSGLNVVEFLSYLNQLGQSKIHGATCPNFGHRYPVVPYCDCPTQQ 129
            QYL +  P LSL+ CSG +V+EFL Y++Q G++K+H   CP +GH  P  P C CP +Q
Sbjct: 103 GQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKTKVHTPVCPFYGHPNPPAP-CPCPLRQ 162

Query: 130 PWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKHYLNNVKVSQEASRGI 180
            W +L ALIGRLR A+EENGG P  NPF    V+ YL  V+ +Q  +RGI
Sbjct: 163 AWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYLREVRETQARARGI 201

[Close]

BLAST of Cucsa.167520 vs. Swiss-Prot
Match: G1L6_ORYSI (Protein G1-like6 OS=Oryza sativa subsp. indica GN=OsI_09389 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.8e-34
Identity = 81/170 (47.65%), Postives = 102/170 (60.00%), Query Frame = 1


Query: 10  AAAAALSRRTSSSSSSSTTITRSSSDSFYSHYYPSVSVSVRPQPLVSRYDCLKRRDWNRF 69
           AAAA  S   SSSS + T+              PS S S    P +SRY+  KRRDWN F
Sbjct: 43  AAAAMFSGAGSSSSGAGTSAGGGGGG-------PSPSSS---SPSLSRYESQKRRDWNTF 102

Query: 70  RQYLTSRSPTLSLACCSGLNVVEFLSYLNQLGQSKIHGATCPNFGHRYPVVPYCDCPTQQ 129
            QYL +  P LSL+ CSG +V+EFL Y++Q G++K+H   CP +GH  P  P C CP +Q
Sbjct: 103 GQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKTKVHTPVCPFYGHPNPPAP-CPCPLRQ 162

Query: 130 PWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKHYLNNVKVSQEASRGI 180
            W +L ALIGRLR A+EENGG P  NPF    V+ YL  V+ +Q  +RGI
Sbjct: 163 AWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYLREVRETQARARGI 201

[Close]

BLAST of Cucsa.167520 vs. Swiss-Prot
Match: LSH6_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana GN=LSH6 PE=1 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.8e-34
Identity = 72/137 (52.55%), Postives = 90/137 (65.69%), Query Frame = 1


Query: 43  PSVSVSVRPQPLVSRYDCLKRRDWNRFRQYLTSRSPTLSLACCSGLNVVEFLSYLNQLGQ 102
           P  S    P    SRY+  KRRDWN F QYL +  P L+L+ CSG +V+EFL YL+Q G+
Sbjct: 17  PGPSFVSSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGK 76

Query: 103 SKIHGATCPNFGHRYPVVPYCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDV 162
           +K+H A CP FGH+ P  P C CP +Q W +L ALIGRLR A+EENGG P +NPF    V
Sbjct: 77  TKVHVAACPYFGHQQPPSP-CSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAV 136

Query: 163 KHYLNNVKVSQEASRGI 180
           + YL  V+ SQ  +RGI
Sbjct: 137 RIYLREVRESQAKARGI 152

[Close]

BLAST of Cucsa.167520 vs. Swiss-Prot
Match: G1L4_ORYSJ (Protein G1-like4 OS=Oryza sativa subsp. japonica GN=G1L4 PE=1 SV=2)

HSP 1 Score: 145.6 bits (366), Expect = 5.3e-34
Identity = 73/141 (51.77%), Postives = 91/141 (64.54%), Query Frame = 1


Query: 39  SHYYPSVSVSVRPQPLVSRYDCLKRRDWNRFRQYLTSRSPTLSLACCSGLNVVEFLSYLN 98
           S+  PS+       P  SRY+  KRRDWN F QYL +  P LSLA CSG +V+EFL YL+
Sbjct: 25  SNSSPSMGAGAPQSP--SRYEAQKRRDWNTFGQYLRNHRPPLSLAQCSGAHVLEFLRYLD 84

Query: 99  QLGQSKIHGATCPNFGHRYPVVPYCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFN 158
           Q G++K+H A CP FGH  P  P C CP +Q W +L AL+GRLR AFEENGG P +NPF 
Sbjct: 85  QFGKTKVHTAACPFFGHPSPPAP-CPCPLRQAWGSLDALVGRLRAAFEENGGRPESNPFA 144

Query: 159 TVDVKHYLNNVKVSQEASRGI 180
              V+ YL  V+  Q  +RG+
Sbjct: 145 ARAVRLYLREVREHQARARGV 162

[Close]

BLAST of Cucsa.167520 vs. TrEMBL
Match: A0A0A0LY69_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G553520 PE=4 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 9.0e-89
Identity = 168/181 (92.82%), Postives = 171/181 (94.48%), Query Frame = 1


Query: 1   MSAAVAAAAAAAAALSRRTSSSSSSSTTITRSSSDSFYSHYYPSVSVSVRPQPLVSRYDC 60
           MSAAVAA  AAAAALSRRTSSSSSSSTTITRSSSDSFYSHYYPSVSVSVRPQPLVSRYDC
Sbjct: 1   MSAAVAA--AAAAALSRRTSSSSSSSTTITRSSSDSFYSHYYPSVSVSVRPQPLVSRYDC 60

Query: 61  LKRRDWNRFRQYLTSRSPTLSLACCSGLNVVEFLSYLNQLGQSKIHGATCPNFGHRYPVV 120
           LKRRDWNRFRQYL SRSPTLSLACCSG NVVEFLSYL++LGQSKIHGATCP+FGHRYPV 
Sbjct: 61  LKRRDWNRFRQYLRSRSPTLSLACCSGSNVVEFLSYLDRLGQSKIHGATCPSFGHRYPVD 120

Query: 121 PYCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKHYLNNVKVSQEASRGID 180
           PYCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTV VK YLN VK SQE SRGID
Sbjct: 121 PYCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVVVKVYLNKVKDSQETSRGID 179

Query: 181 R 182
           R
Sbjct: 181 R 179

[Close]

BLAST of Cucsa.167520 vs. TrEMBL
Match: M5WII3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010212mg PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.5e-38
Identity = 91/181 (50.28%), Postives = 120/181 (66.30%), Query Frame = 1


Query: 4   AVAAAAAAAAALSRRTSSSSSSSTTITRSSSDSFYSH----YYPSVSVSVRP-QPLVSRY 63
           + AAAAAAAAA+ R      SSSTT + S +D+++ H    + P V+ S+   QP++SRY
Sbjct: 2   SAAAAAAAAAAVCR------SSSTTSSSSGADNYHHHQQQQHRPLVTPSLTAAQPVLSRY 61

Query: 64  DCLKRRDWNRFRQYLTSRSPTLSLACCSGLNVVEFLSYLNQLGQSKIHGATCPNFGHRYP 123
           +  KRRDW  F QYL +  P L+L+ CSG +V+EFL YL+Q G++K+H   CP +GH +P
Sbjct: 62  ESQKRRDWITFGQYLKNHKPPLTLSRCSGAHVLEFLRYLDQFGKTKVHADVCPFYGHPHP 121

Query: 124 VVPYCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKHYLNNVKVSQEASRG 180
             P C CP +Q W +L ALIGRLR AFEENGG P TNPF    V+ YL  V+ SQ  +RG
Sbjct: 122 PAP-CPCPLRQAWGSLDALIGRLRAAFEENGGQPETNPFGARAVRLYLREVRDSQAKARG 175

[Close]

BLAST of Cucsa.167520 vs. TrEMBL
Match: F6HM17_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g05690 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 2.1e-37
Identity = 94/179 (52.51%), Postives = 117/179 (65.36%), Query Frame = 1


Query: 1   MSAAVAAAAAAAAALSRRTSSSSSSSTTITRSSSDSFYSHYYPSVSVSVRPQPLVSRYDC 60
           MSAAVAAAAAAA + SR  S++SSSS      + +S  S     ++V+   QP  SRY+ 
Sbjct: 1   MSAAVAAAAAAANSGSRCNSANSSSS-----GNENSLLSR---QIAVTQPLQP-PSRYES 60

Query: 61  LKRRDWNRFRQYLTSRSPTLSLACCSGLNVVEFLSYLNQLGQSKIHGATCPNFGHRYPVV 120
            KRRDWN F QYL +  P L+L  CSG NV+EFL YL+Q G++K+H   CP FGH +P  
Sbjct: 61  QKRRDWNTFGQYLRNHRPPLALNRCSGANVLEFLRYLDQFGKTKVHTQMCPFFGHPHPPA 120

Query: 121 PYCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKHYLNNVKVSQEASRGI 180
           P C CP +Q W +L ALIGRLR AFEENGG P TNPF    V+ YL  V+ +Q  +RGI
Sbjct: 121 P-CPCPLRQAWGSLDALIGRLRAAFEENGGPPETNPFGARAVRLYLREVRDAQAKARGI 169

[Close]

BLAST of Cucsa.167520 vs. TrEMBL
Match: W9R7N8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025951 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 4.7e-37
Identity = 91/179 (50.84%), Postives = 114/179 (63.69%), Query Frame = 1


Query: 1   MSAAVAAAAAAAAALSRRTSSSSSSSTTITRSSSDSFYSHYYPSVSVSVRPQPLVSRYDC 60
           MSAAVAAAAAAA+      +SS++SS  I      S  S   PS +   +  P +SRY+ 
Sbjct: 1   MSAAVAAAAAAASI-----ASSAASSDAIFNGHHQSLLS-ITPSPAPPPQQPPSLSRYES 60

Query: 61  LKRRDWNRFRQYLTSRSPTLSLACCSGLNVVEFLSYLNQLGQSKIHGATCPNFGHRYPVV 120
            KRRDWN F QYL +  P L+L+ CSG +V+EFL YL+Q G++K+H  TCP +G   P  
Sbjct: 61  QKRRDWNTFGQYLKNHRPPLTLSRCSGAHVLEFLRYLDQFGKTKVHSDTCPFYGKPQPPA 120

Query: 121 PYCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKHYLNNVKVSQEASRGI 180
           P C CP +Q W +L ALIGRLR AFEENGG P TNPF    V+ YL  V+ SQ  +RGI
Sbjct: 121 P-CPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRDSQAKARGI 172

[Close]

BLAST of Cucsa.167520 vs. TrEMBL
Match: A0A0A0KPA1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G526250 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 4.0e-36
Identity = 81/161 (50.31%), Postives = 108/161 (67.08%), Query Frame = 1


Query: 21  SSSSSSTTITRSSSDSFYSHYYPSV--SVSVRPQPLVSRYDCLKRRDWNRFRQYLTSRSP 80
           ++SS+ TT T +S+ S    +YP +  +    P P +SRY+  KRRDWN F QYL +  P
Sbjct: 7   TASSAVTTYTSASTTSDNHPHYPLLLPAPPSPPTPALSRYESQKRRDWNTFGQYLKNHRP 66

Query: 81  TLSLACCSGLNVVEFLSYLNQLGQSKIHGATCPNFGHRYPVVPYCDCPTQQPWTTLVALI 140
            L+L+ CSG +++EFL YL+Q G++K+H ++CP FGH  P  P C CP +Q W +L ALI
Sbjct: 67  PLTLSRCSGAHILEFLRYLDQFGKTKVHTSSCPFFGHPQPPAP-CPCPLRQAWGSLDALI 126

Query: 141 GRLRVAFEENGGNPVTNPFNTVDVKHYLNNVKVSQEASRGI 180
           GRLR AFEENGG P TNPF T  V+ YL  V+ SQ  +RGI
Sbjct: 127 GRLRAAFEENGGQPDTNPFGTRAVRLYLREVRESQAKARGI 166

[Close]

BLAST of Cucsa.167520 vs. TAIR10
Match: AT3G23290.2 (AT3G23290.2 Protein of unknown function (DUF640))

HSP 1 Score: 148.7 bits (374), Expect = 3.6e-36
Identity = 83/169 (49.11%), Postives = 104/169 (61.54%), Query Frame = 1


Query: 11  AAAALSRRTSSSSSSSTTITRSSSDSFYSHYYPSVSVSVRPQPLVSRYDCLKRRDWNRFR 70
           AAAA +  TSSSSSSS+  + ++                     +SRY+  KRRDWN F 
Sbjct: 22  AAAATTTTTSSSSSSSSGGSGTNQ--------------------LSRYENQKRRDWNTFG 81

Query: 71  QYLTSRSPTLSLACCSGLNVVEFLSYLNQLGQSKIHGATCPNFGHRYPVVPYCDCPTQQP 130
           QYL +  P LSL+ CSG +V+EFL YL+Q G++K+H   CP FGH  P  P C CP +Q 
Sbjct: 82  QYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAP-CACPLRQA 141

Query: 131 WTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKHYLNNVKVSQEASRGI 180
           W +L ALIGRLR AFEENGG+P TNPF    V+ YL  V+ SQ  +RGI
Sbjct: 142 WGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGI 169

[Close]

BLAST of Cucsa.167520 vs. TAIR10
Match: AT1G07090.1 (AT1G07090.1 Protein of unknown function (DUF640))

HSP 1 Score: 147.1 bits (370), Expect = 1.0e-35
Identity = 72/137 (52.55%), Postives = 90/137 (65.69%), Query Frame = 1


Query: 43  PSVSVSVRPQPLVSRYDCLKRRDWNRFRQYLTSRSPTLSLACCSGLNVVEFLSYLNQLGQ 102
           P  S    P    SRY+  KRRDWN F QYL +  P L+L+ CSG +V+EFL YL+Q G+
Sbjct: 17  PGPSFVSSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGK 76

Query: 103 SKIHGATCPNFGHRYPVVPYCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDV 162
           +K+H A CP FGH+ P  P C CP +Q W +L ALIGRLR A+EENGG P +NPF    V
Sbjct: 77  TKVHVAACPYFGHQQPPSP-CSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAV 136

Query: 163 KHYLNNVKVSQEASRGI 180
           + YL  V+ SQ  +RGI
Sbjct: 137 RIYLREVRESQAKARGI 152

[Close]

BLAST of Cucsa.167520 vs. TAIR10
Match: AT2G31160.1 (AT2G31160.1 Protein of unknown function (DUF640))

HSP 1 Score: 139.8 bits (351), Expect = 1.7e-33
Identity = 76/160 (47.50%), Postives = 96/160 (60.00%), Query Frame = 1


Query: 20  SSSSSSSTTITRSSSDSFYSHYYPSVSVSVRPQPLVSRYDCLKRRDWNRFRQYLTSRSPT 79
           S++SSS T  T   +          +S S  P    SRY+  KRRDWN F QYL +  P 
Sbjct: 24  SNNSSSVTGATGGEATQ-------PLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPP 83

Query: 80  LSLACCSGLNVVEFLSYLNQLGQSKIHGATCPNFGHRYPVVPYCDCPTQQPWTTLVALIG 139
           LSL+ CSG +V+EFL YL+Q G++K+H   C  +GH  P  P C CP +Q W +L ALIG
Sbjct: 84  LSLSRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAP-CPCPLRQAWGSLDALIG 143

Query: 140 RLRVAFEENGGNPVTNPFNTVDVKHYLNNVKVSQEASRGI 180
           RLR AFEENGG P TNPF    V+ YL  V+  Q  +RG+
Sbjct: 144 RLRAAFEENGGKPETNPFGARAVRLYLREVRDMQSKARGV 175

[Close]

BLAST of Cucsa.167520 vs. TAIR10
Match: AT3G04510.1 (AT3G04510.1 Protein of unknown function (DUF640))

HSP 1 Score: 132.9 bits (333), Expect = 2.0e-31
Identity = 66/127 (51.97%), Postives = 84/127 (66.14%), Query Frame = 1


Query: 53  PLVSRYDCLKRRDWNRFRQYLTSRSPTLSLACCSGLNVVEFLSYLNQLGQSKIHGATCPN 112
           P  SRY+  KRRDWN F QYL +  P LSLA CSG +V++FL YL+Q G++K+H   C  
Sbjct: 29  PSSSRYENQKRRDWNTFCQYLRNHHPPLSLASCSGAHVLDFLRYLDQFGKTKVHHQNCAF 88

Query: 113 FGHRYPVVPYCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKHYLNNVKVS 172
           FG   P  P C CP +Q W +L ALIGRLR A+EENGG P T+PF +  V+ +L  V+  
Sbjct: 89  FGLPNPPAP-CPCPLRQAWGSLDALIGRLRAAYEENGGAPETSPFGSRSVRIFLREVRDF 148

Query: 173 QEASRGI 180
           Q  SRG+
Sbjct: 149 QAKSRGV 154

[Close]

BLAST of Cucsa.167520 vs. TAIR10
Match: AT5G28490.1 (AT5G28490.1 Protein of unknown function (DUF640))

HSP 1 Score: 132.1 bits (331), Expect = 3.4e-31
Identity = 68/137 (49.64%), Postives = 87/137 (63.50%), Query Frame = 1


Query: 43  PSVSVSVRPQPLVSRYDCLKRRDWNRFRQYLTSRSPTLSLACCSGLNVVEFLSYLNQLGQ 102
           P+ S  + P P  SRY+  KRRDWN F QYL +  P LSL  CSG +V+EFL YL+Q G+
Sbjct: 12  PNSSTQLTP-PSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGK 71

Query: 103 SKIHGATCPNFGHRYPVVPYCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDV 162
           +K+H   C  FG   P  P C CP +Q W +L ALIGRLR A+EENGG P  NPF +  V
Sbjct: 72  TKVHHQNCAFFGLPNPPAP-CPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAV 131

Query: 163 KHYLNNVKVSQEASRGI 180
           + +L  V+  Q  +RG+
Sbjct: 132 RLFLREVRDFQAKARGV 146

[Close]

BLAST of Cucsa.167520 vs. NCBI nr
Match: gi|449435938|ref|XP_004135751.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucumis sativus])

HSP 1 Score: 334.3 bits (856), Expect = 1.3e-88
Identity = 168/181 (92.82%), Postives = 171/181 (94.48%), Query Frame = 1


Query: 1   MSAAVAAAAAAAAALSRRTSSSSSSSTTITRSSSDSFYSHYYPSVSVSVRPQPLVSRYDC 60
           MSAAVAA  AAAAALSRRTSSSSSSSTTITRSSSDSFYSHYYPSVSVSVRPQPLVSRYDC
Sbjct: 1   MSAAVAA--AAAAALSRRTSSSSSSSTTITRSSSDSFYSHYYPSVSVSVRPQPLVSRYDC 60

Query: 61  LKRRDWNRFRQYLTSRSPTLSLACCSGLNVVEFLSYLNQLGQSKIHGATCPNFGHRYPVV 120
           LKRRDWNRFRQYL SRSPTLSLACCSG NVVEFLSYL++LGQSKIHGATCP+FGHRYPV 
Sbjct: 61  LKRRDWNRFRQYLRSRSPTLSLACCSGSNVVEFLSYLDRLGQSKIHGATCPSFGHRYPVD 120

Query: 121 PYCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKHYLNNVKVSQEASRGID 180
           PYCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTV VK YLN VK SQE SRGID
Sbjct: 121 PYCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVVVKVYLNKVKDSQETSRGID 179

Query: 181 R 182
           R
Sbjct: 181 R 179

[Close]

BLAST of Cucsa.167520 vs. NCBI nr
Match: gi|659118446|ref|XP_008459123.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucumis melo])

HSP 1 Score: 305.1 bits (780), Expect = 8.4e-80
Identity = 154/181 (85.08%), Postives = 160/181 (88.40%), Query Frame = 1


Query: 1   MSAAVAAAAAAAAALSRRTSSSSSSSTTITRSSSDSFYSHYYPSVSVSVRPQPLVSRYDC 60
           MSAAVAAAAAAA  L RRTSS+S      T SSSDSFYSHYYPS SVSVRP PL+SRY+C
Sbjct: 1   MSAAVAAAAAAA--LGRRTSSTS------TPSSSDSFYSHYYPSASVSVRPPPLLSRYEC 60

Query: 61  LKRRDWNRFRQYLTSRSPTLSLACCSGLNVVEFLSYLNQLGQSKIHGATCPNFGHRYPVV 120
           LKRRDWNRFRQYL SR PTLSLACCSG NVVEFL YL++LGQSKIHGATCPNFG RYPV 
Sbjct: 61  LKRRDWNRFRQYLRSRCPTLSLACCSGANVVEFLCYLDELGQSKIHGATCPNFGQRYPVD 120

Query: 121 PYCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKHYLNNVKVSQEASRGID 180
           PYCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVK YLN+VK SQE SRGID
Sbjct: 121 PYCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKVYLNDVKDSQERSRGID 173

Query: 181 R 182
           R
Sbjct: 181 R 173

[Close]

BLAST of Cucsa.167520 vs. NCBI nr
Match: gi|595865083|ref|XP_007211887.1| (hypothetical protein PRUPE_ppa010212mg [Prunus persica])

HSP 1 Score: 167.5 bits (423), Expect = 2.1e-38
Identity = 91/181 (50.28%), Postives = 120/181 (66.30%), Query Frame = 1


Query: 4   AVAAAAAAAAALSRRTSSSSSSSTTITRSSSDSFYSH----YYPSVSVSVRP-QPLVSRY 63
           + AAAAAAAAA+ R      SSSTT + S +D+++ H    + P V+ S+   QP++SRY
Sbjct: 2   SAAAAAAAAAAVCR------SSSTTSSSSGADNYHHHQQQQHRPLVTPSLTAAQPVLSRY 61

Query: 64  DCLKRRDWNRFRQYLTSRSPTLSLACCSGLNVVEFLSYLNQLGQSKIHGATCPNFGHRYP 123
           +  KRRDW  F QYL +  P L+L+ CSG +V+EFL YL+Q G++K+H   CP +GH +P
Sbjct: 62  ESQKRRDWITFGQYLKNHKPPLTLSRCSGAHVLEFLRYLDQFGKTKVHADVCPFYGHPHP 121

Query: 124 VVPYCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKHYLNNVKVSQEASRG 180
             P C CP +Q W +L ALIGRLR AFEENGG P TNPF    V+ YL  V+ SQ  +RG
Sbjct: 122 PAP-CPCPLRQAWGSLDALIGRLRAAFEENGGQPETNPFGARAVRLYLREVRDSQAKARG 175

[Close]

BLAST of Cucsa.167520 vs. NCBI nr
Match: gi|645238460|ref|XP_008225689.1| (PREDICTED: LOW QUALITY PROTEIN: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Prunus mume])

HSP 1 Score: 167.2 bits (422), Expect = 2.7e-38
Identity = 89/179 (49.72%), Postives = 118/179 (65.92%), Query Frame = 1


Query: 6   AAAAAAAAALSRRTSSSSSSSTTITRSSSDSFYSHYYPSVSVSVRPQ-----PLVSRYDC 65
           AAAAAAAAA+  R+SS++SSS     S +D+++ H+     + V P      P++SRY+ 
Sbjct: 3   AAAAAAAAAVVCRSSSTTSSS-----SGADNYHHHHQQQHRLLVTPSLTAAPPVLSRYES 62

Query: 66  LKRRDWNRFRQYLTSRSPTLSLACCSGLNVVEFLSYLNQLGQSKIHGATCPNFGHRYPVV 125
            KRRDW  F QYL +  P L+L+ CSG +V+EFL YL+Q G++K+H   CP +GH +P  
Sbjct: 63  QKRRDWITFGQYLKNHKPPLTLSRCSGAHVLEFLRYLDQFGKTKVHADACPFYGHPHPPA 122

Query: 126 PYCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKHYLNNVKVSQEASRGI 180
           P C CP +Q W +L ALIGRLR AFEENGG P TNPF    V+ YL  V+ SQ  +RGI
Sbjct: 123 P-CPCPLRQAWGSLDALIGRLRAAFEENGGQPETNPFGARAVRLYLREVRDSQAKARGI 175

[Close]

BLAST of Cucsa.167520 vs. NCBI nr
Match: gi|225444171|ref|XP_002271024.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Vitis vinifera])

HSP 1 Score: 163.7 bits (413), Expect = 3.0e-37
Identity = 94/179 (52.51%), Postives = 117/179 (65.36%), Query Frame = 1


Query: 1   MSAAVAAAAAAAAALSRRTSSSSSSSTTITRSSSDSFYSHYYPSVSVSVRPQPLVSRYDC 60
           MSAAVAAAAAAA + SR  S++SSSS      + +S  S     ++V+   QP  SRY+ 
Sbjct: 1   MSAAVAAAAAAANSGSRCNSANSSSS-----GNENSLLSR---QIAVTQPLQP-PSRYES 60

Query: 61  LKRRDWNRFRQYLTSRSPTLSLACCSGLNVVEFLSYLNQLGQSKIHGATCPNFGHRYPVV 120
            KRRDWN F QYL +  P L+L  CSG NV+EFL YL+Q G++K+H   CP FGH +P  
Sbjct: 61  QKRRDWNTFGQYLRNHRPPLALNRCSGANVLEFLRYLDQFGKTKVHTQMCPFFGHPHPPA 120

Query: 121 PYCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKHYLNNVKVSQEASRGI 180
           P C CP +Q W +L ALIGRLR AFEENGG P TNPF    V+ YL  V+ +Q  +RGI
Sbjct: 121 P-CPCPLRQAWGSLDALIGRLRAAFEENGGPPETNPFGARAVRLYLREVRDAQAKARGI 169

The following BLAST results are available for this feature:

BLAST of Cucsa.167520 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LSH4_ARATH	6.3e-35	49.11	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana GN=LSH4 PE=1 ...	[more]
G1L6_ORYSJ	1.8e-34	47.65	Protein G1-like6 OS=Oryza sativa subsp. japonica GN=G1L6 PE=1 SV=1	[more]
G1L6_ORYSI	1.8e-34	47.65	Protein G1-like6 OS=Oryza sativa subsp. indica GN=OsI_09389 PE=3 SV=1	[more]
LSH6_ARATH	1.8e-34	52.55	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana GN=LSH6 PE=1 ...	[more]
G1L4_ORYSJ	5.3e-34	51.77	Protein G1-like4 OS=Oryza sativa subsp. japonica GN=G1L4 PE=1 SV=2	[more]

BLAST of Cucsa.167520 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY69_CUCSA	9.0e-89	92.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G553520 PE=4 SV=1	[more]
M5WII3_PRUPE	1.5e-38	50.28	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010212mg PE=4 SV=1	[more]
F6HM17_VITVI	2.1e-37	52.51	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g05690 PE=4 SV=...	[more]
W9R7N8_9ROSA	4.7e-37	50.84	Uncharacterized protein OS=Morus notabilis GN=L484_025951 PE=4 SV=1	[more]
A0A0A0KPA1_CUCSA	4.0e-36	50.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G526250 PE=4 SV=1	[more]

BLAST of Cucsa.167520 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G23290.2	3.6e-36	49.11	Protein of unknown function (DUF640)	[more]
AT1G07090.1	1.0e-35	52.55	Protein of unknown function (DUF640)	[more]
AT2G31160.1	1.7e-33	47.50	Protein of unknown function (DUF640)	[more]
AT3G04510.1	2.0e-31	51.97	Protein of unknown function (DUF640)	[more]
AT5G28490.1	3.4e-31	49.64	Protein of unknown function (DUF640)	[more]

BLAST of Cucsa.167520 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449435938\|ref\|XP_004135751.1\|	1.3e-88	92.82	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucumis sativus]	[more]
gi\|659118446\|ref\|XP_008459123.1\|	8.4e-80	85.08	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucumis melo]	[more]
gi\|595865083\|ref\|XP_007211887.1\|	2.1e-38	50.28	hypothetical protein PRUPE_ppa010212mg [Prunus persica]	[more]
gi\|645238460\|ref\|XP_008225689.1\|	2.7e-38	49.72	PREDICTED: LOW QUALITY PROTEIN: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like ...	[more]
gi\|225444171\|ref\|XP_002271024.1\|	3.0e-37	52.51	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006936	ALOG_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.167520.1	Cucsa.167520.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 50..170 score: 8.3
IPR006936	ALOG domain	PROFILE	PS51697	ALOG	coord: 57..181 score: 32
None	No IPR available	PANTHER	PTHR31165	FAMILY NOT NAMED	coord: 17..179 score: 3.7
None	No IPR available	PANTHER	PTHR31165:SF4	SUBFAMILY NOT NAMED	coord: 17..179 score: 3.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.167520	Cla019758	Watermelon (97103) v1	cgywmB313
Cucsa.167520	Csa1G553520	Cucumber (Chinese Long) v2	cgycuB255
Cucsa.167520	MELO3C021818	Melon (DHL92) v3.5.1	cgymeB297
Cucsa.167520	ClCG03G008600	Watermelon (Charleston Gray)	cgywcgB296
Cucsa.167520	CSPI01G25370	Wild cucumber (PI 183967)	cgycpiB262
Cucsa.167520	CmaCh13G004610	Cucurbita maxima (Rimu)	cgycmaB0475
Cucsa.167520	CmoCh13G004950	Cucurbita moschata (Rifu)	cgycmoB0478
Cucsa.167520	Lsi02G009970	Bottle gourd (USVL1VR-Ls)	cgylsiB278
Cucsa.167520	Cp4.1LG20g05800	Cucurbita pepo (Zucchini)	cgycpeB0463
Cucsa.167520	Cp4.1LG09g07120	Cucurbita pepo (Zucchini)	cgycpeB0462
Cucsa.167520	MELO3C021818.2	Melon (DHL92) v3.6.1	cgymedB290
Cucsa.167520	CsaV3_1G037700	Cucumber (Chinese Long) v3	cgycucB267
Cucsa.167520	Cla97C03G059860	Watermelon (97103) v2	cgywmbB300
Cucsa.167520	Bhi08G000798	Wax gourd	cgywgoB345
Cucsa.167520	Carg21424	Silver-seed gourd	carcgyB0462
Cucsa.167520	Carg25396	Silver-seed gourd	carcgyB0517

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.167520	Cucurbita maxima (Rimu)	cgycmaB0476
Cucsa.167520	Cucurbita moschata (Rifu)	cgycmoB0479