Carg04630 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg04630
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transmembrane protein
Location	Cucurbita_argyrosperma_scaffold_028 : 126433 .. 126831 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAGAATCCCAACAAAGATGTGCTGTGGAGATGGCGATTGTAGGCCATTGGGCTTCTTGCTCGGCTTGCCTTTTGCATTCGTTTCTCTTATTCTTTCCCTGGTCGGCGTAATTATCTGGATTGTCGGGTAAATTTGTCGAATCTCCTTTAATTTTTAGCTTCTGGGTGTTCATGATTTGGTTTGTTTCGTCTGAATCTGATGCCCCTTTTCACTTTTCTATCGATTTCTATCGATTCATGACTGTATTTGCTCTGGGTTTTCGCTGCAGATTGACGCTTTCTTGCATATGTCCTTGTTGCTTGTGCTTGACGGTGATAGTGGAGCTAGCGTTGGAGCTGATCAAAGCCCCAATTCATGTCATGCAGTGGTTTACTTCCCAGATTCCTTGTTGA

mRNA sequence

AAAAAAAAAGAATCCCAACAAAGATGTGCTGTGGAGATGGCGATTGTAGGCCATTGGGCTTCTTGCTCGGCTTGCCTTTTGCATTCGTTTCTCTTATTCTTTCCCTGGTCGGCGTAATTATCTGGATTGTCGGATTGACGCTTTCTTGCATATGTCCTTGTTGCTTGTGCTTGACGGTGATAGTGGAGCTAGCGTTGGAGCTGATCAAAGCCCCAATTCATGTCATGCAGTGGTTTACTTCCCAGATTCCTTGTTGA

Coding sequence (CDS)

ATGTGCTGTGGAGATGGCGATTGTAGGCCATTGGGCTTCTTGCTCGGCTTGCCTTTTGCATTCGTTTCTCTTATTCTTTCCCTGGTCGGCGTAATTATCTGGATTGTCGGATTGACGCTTTCTTGCATATGTCCTTGTTGCTTGTGCTTGACGGTGATAGTGGAGCTAGCGTTGGAGCTGATCAAAGCCCCAATTCATGTCATGCAGTGGTTTACTTCCCAGATTCCTTGTTGA

Protein sequence

MCCGDGDCRPLGFLLGLPFAFVSLILSLVGVIIWIVGLTLSCICPCCLCLTVIVELALELIKAPIHVMQWFTSQIPC

Homology

[Close]

BLAST of Carg04630 vs. NCBI nr
Match: XP_022930666.1 (uncharacterized protein LOC111437071 [Cucurbita moschata] >XP_022930667.1 uncharacterized protein LOC111437071 [Cucurbita moschata] >XP_023530442.1 uncharacterized protein LOC111793011 [Cucurbita pepo subsp. pepo] >XP_023530443.1 uncharacterized protein LOC111793011 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124.0 bits (310), Expect = 2.2e-25
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MCCGDGDCRPLGFLLGLPFAFVSLILSLVGVIIWIVGLTXXXXXXXXXXXXXXXELALEL 60
          MCCGDGDCRPLGFLLGLPFAFVSLILSLVGVIIWIVGLTXXXXXXXXXXXXXXXELALEL
Sbjct: 1  MCCGDGDCRPLGFLLGLPFAFVSLILSLVGVIIWIVGLTXXXXXXXXXXXXXXXELALEL 60

Query: 61 IKAPIHVMQWFTSQIPC 78
          IKAPIHVMQWFTSQIPC
Sbjct: 61 IKAPIHVMQWFTSQIPC 77

[Close]

BLAST of Carg04630 vs. NCBI nr
Match: XP_022989078.1 (uncharacterized protein LOC111486258 [Cucurbita maxima] >XP_022989079.1 uncharacterized protein LOC111486258 [Cucurbita maxima])

HSP 1 Score: 122.5 bits (306), Expect = 6.4e-25
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MCCGDGDCRPLGFLLGLPFAFVSLILSLVGVIIWIVGLTXXXXXXXXXXXXXXXELALEL 60
          MCCGDGDCRPLGFLLGLPFAFVSLILSLVGVIIWIVGLTXXXXXXXXXXXXXXXELALEL
Sbjct: 1  MCCGDGDCRPLGFLLGLPFAFVSLILSLVGVIIWIVGLTXXXXXXXXXXXXXXXELALEL 60

Query: 61 IKAPIHVMQWFTSQIPC 78
          IKAPIHVMQWFTS+IPC
Sbjct: 61 IKAPIHVMQWFTSKIPC 77

[Close]

BLAST of Carg04630 vs. NCBI nr
Match: XP_002326022.1 (uncharacterized protein LOC7494601 [Populus trichocarpa] >PNS91253.1 hypothetical protein POPTR_019G090500v3 [Populus trichocarpa])

HSP 1 Score: 116.3 bits (290), Expect = 4.6e-23
Identity = 66/77 (85.71%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 1  MCCGDGDCRPLGFLLGLPFAFVSLILSLVGVIIWIVGLTXXXXXXXXXXXXXXXELALEL 60
          MCCGDGDCRPLGFLLGLPFAF+SLI+S VGV+IWIVGL     XXXXXXXXXX ELALEL
Sbjct: 1  MCCGDGDCRPLGFLLGLPFAFLSLIISAVGVVIWIVGLLLSCVXXXXXXXXXXVELALEL 60

Query: 61 IKAPIHVMQWFTSQIPC 78
          IKAPIHVM+WFTSQIPC
Sbjct: 61 IKAPIHVMEWFTSQIPC 77

[Close]

BLAST of Carg04630 vs. NCBI nr
Match: PSS05658.1 (Protein strawberry notch like [Actinidia chinensis var. chinensis])

HSP 1 Score: 115.9 bits (289), Expect = 6.0e-23
Identity = 54/77 (70.13%), Postives = 61/77 (79.22%), Query Frame = 0


Query: 1   MCCGDGDCRPLGFLLGLPFAFVSLILSLVGVIIWIVGLTXXXXXXXXXXXXXXXELALEL 60
           MCCGDGDCRPLGFLLGLPFAF+SL+L++VG++IWIVGL                ELALEL
Sbjct: 39  MCCGDGDCRPLGFLLGLPFAFLSLLLTIVGIVIWIVGLMLTCICPCFLCLTIIVELALEL 98

Query: 61  IKAPIHVMQWFTSQIPC 78
           IKAPIHVM+WFTSQIPC
Sbjct: 99  IKAPIHVMEWFTSQIPC 115

[Close]

BLAST of Carg04630 vs. NCBI nr
Match: XP_024987348.1 (uncharacterized protein LOC112522459 [Cynara cardunculus var. scolymus])

HSP 1 Score: 115.5 bits (288), Expect = 7.8e-23
Identity = 66/77 (85.71%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MCCGDGDCRPLGFLLGLPFAFVSLILSLVGVIIWIVGLTXXXXXXXXXXXXXXXELALEL 60
          MCCGDGDCRPLGFLLGLPFAF+SL+LS+VGV++WIVGL   XXXXXXXXXXXXXE+A+EL
Sbjct: 1  MCCGDGDCRPLGFLLGLPFAFLSLLLSIVGVVVWIVGLLLTXXXXXXXXXXXXXEIAIEL 60

Query: 61 IKAPIHVMQWFTSQIPC 78
          IKAPIHVM+WFTSQIPC
Sbjct: 61 IKAPIHVMEWFTSQIPC 77

[Close]

BLAST of Carg04630 vs. TAIR10
Match: AT2G31090.1 (unknown protein)

HSP 1 Score: 99.0 bits (245), Expect = 1.4e-21
Identity = 58/77 (75.32%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 1  MCCGDGDCRPLGFLLGLPFAFVSLILSLVGVIIWIVGLTXXXXXXXXXXXXXXXELALEL 60
          MC  DGDCRPLGFLLGLPFAF+SL+LS++GVIIWIVGL     XXXXXXXXX  E+A+ L
Sbjct: 1  MC--DGDCRPLGFLLGLPFAFLSLLLSIIGVIIWIVGLLLSCIXXXXXXXXXLVEIAIGL 60

Query: 61 IKAPIHVMQWFTSQIPC 78
          IKAPIHVM+WF S+IPC
Sbjct: 61 IKAPIHVMEWFMSKIPC 75

[Close]

BLAST of Carg04630 vs. TAIR10
Match: AT2G20562.1 (unknown protein)

HSP 1 Score: 50.1 bits (118), Expect = 7.3e-07
Identity = 30/72 (41.67%), Postives = 35/72 (48.61%), Query Frame = 0


Query: 6  GDCRPLGFLLGLPFAFVSLILSLVGVIIWIVGLTXXXXXXXXXXXXXXXELALELIKAPI 65
          GDCRPLGFL+GLPFA                   XXX              A++LIK PI
Sbjct: 2  GDCRPLGFLIGLPFAXXXXXXXXXXXXXXXXXXXXXXLCPCCFCFAALANFAVDLIKLPI 61

Query: 66 HVMQWFTSQIPC 78
           V++WFT  IPC
Sbjct: 62 KVLRWFTHSIPC 73

[Close]

BLAST of Carg04630 vs. TrEMBL
Match: tr|B9IQQ0|B9IQQ0_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G090500v3 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 3.0e-23
Identity = 66/77 (85.71%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 1  MCCGDGDCRPLGFLLGLPFAFVSLILSLVGVIIWIVGLTXXXXXXXXXXXXXXXELALEL 60
          MCCGDGDCRPLGFLLGLPFAF+SLI+S VGV+IWIVGL     XXXXXXXXXX ELALEL
Sbjct: 1  MCCGDGDCRPLGFLLGLPFAFLSLIISAVGVVIWIVGLLLSCVXXXXXXXXXXVELALEL 60

Query: 61 IKAPIHVMQWFTSQIPC 78
          IKAPIHVM+WFTSQIPC
Sbjct: 61 IKAPIHVMEWFTSQIPC 77

[Close]

BLAST of Carg04630 vs. TrEMBL
Match: tr|A0A2R6QBZ6|A0A2R6QBZ6_ACTCH (Protein strawberry notch like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc18927 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.9e-23
Identity = 54/77 (70.13%), Postives = 61/77 (79.22%), Query Frame = 0


Query: 1   MCCGDGDCRPLGFLLGLPFAFVSLILSLVGVIIWIVGLTXXXXXXXXXXXXXXXELALEL 60
           MCCGDGDCRPLGFLLGLPFAF+SL+L++VG++IWIVGL                ELALEL
Sbjct: 39  MCCGDGDCRPLGFLLGLPFAFLSLLLTIVGIVIWIVGLMLTCICPCFLCLTIIVELALEL 98

Query: 61  IKAPIHVMQWFTSQIPC 78
           IKAPIHVM+WFTSQIPC
Sbjct: 99  IKAPIHVMEWFTSQIPC 115

[Close]

BLAST of Carg04630 vs. TrEMBL
Match: tr|A0A0K9RRS6|A0A0K9RRS6_SPIOL (Uncharacterized protein OS=Spinacia oleracea OX=3562 GN=SOVF_041900 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.6e-22
Identity = 68/77 (88.31%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MCCGDGDCRPLGFLLGLPFAFVSLILSLVGVIIWIVGLTXXXXXXXXXXXXXXXELALEL 60
          MCCGDGDCRPLGFLLGLPFAF+ L++S+VG+IIWIVGLTXXXXXXXXXXXXXXX LALEL
Sbjct: 1  MCCGDGDCRPLGFLLGLPFAFLCLLISIVGIIIWIVGLTXXXXXXXXXXXXXXXXLALEL 60

Query: 61 IKAPIHVMQWFTSQIPC 78
          IKAPIHVM+WFTS+IPC
Sbjct: 61 IKAPIHVMEWFTSKIPC 77

[Close]

BLAST of Carg04630 vs. TrEMBL
Match: tr|A0A200QVP3|A0A200QVP3_9MAGN (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_1037g53 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 5.7e-22
Identity = 60/77 (77.92%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 1  MCCGDGDCRPLGFLLGLPFAFVSLILSLVGVIIWIVGLTXXXXXXXXXXXXXXXELALEL 60
          MCC DGDCRPLGFLLGLPFAF+SL+LS++GV+IWIVGL     XXXXXXX    ELALEL
Sbjct: 1  MCCCDGDCRPLGFLLGLPFAFLSLLLSIIGVVIWIVGLLLTCIXXXXXXXTIIVELALEL 60

Query: 61 IKAPIHVMQWFTSQIPC 78
          IKAPIHVM+WFTS+IPC
Sbjct: 61 IKAPIHVMEWFTSKIPC 77

[Close]

BLAST of Carg04630 vs. TrEMBL
Match: tr|A0A0A0KGH9|A0A0A0KGH9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G419460 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 7.4e-22
Identity = 69/77 (89.61%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 1  MCCGDGDCRPLGFLLGLPFAFVSLILSLVGVIIWIVGLTXXXXXXXXXXXXXXXELALEL 60
          MCCGDGDCRPLGFLLGLPFAFVSLILS++GVIIWIVGL XXXXXXXXXXXXXXX   LEL
Sbjct: 1  MCCGDGDCRPLGFLLGLPFAFVSLILSIIGVIIWIVGLXXXXXXXXXXXXXXXXXXXLEL 60

Query: 61 IKAPIHVMQWFTSQIPC 78
          IKAP HVM+WFTSQIPC
Sbjct: 61 IKAPFHVMEWFTSQIPC 77

The following BLAST results are available for this feature:

BLAST of Carg04630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930666.1	2.2e-25	100.00	uncharacterized protein LOC111437071 [Cucurbita moschata] >XP_022930667.1 unchar...	[more]
XP_022989078.1	6.4e-25	98.70	uncharacterized protein LOC111486258 [Cucurbita maxima] >XP_022989079.1 uncharac...	[more]
XP_002326022.1	4.6e-23	85.71	uncharacterized protein LOC7494601 [Populus trichocarpa] >PNS91253.1 hypothetica...	[more]
PSS05658.1	6.0e-23	70.13	Protein strawberry notch like [Actinidia chinensis var. chinensis]	[more]
XP_024987348.1	7.8e-23	85.71	uncharacterized protein LOC112522459 [Cynara cardunculus var. scolymus]	[more]

BLAST of Carg04630 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G31090.1	1.4e-21	75.32	unknown protein	[more]
AT2G20562.1	7.3e-07	41.67	unknown protein	[more]

BLAST of Carg04630 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg04630 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|B9IQQ0\|B9IQQ0_POPTR	3.0e-23	85.71	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G090500v3 PE=...	[more]
tr\|A0A2R6QBZ6\|A0A2R6QBZ6_ACTCH	3.9e-23	70.13	Protein strawberry notch like OS=Actinidia chinensis var. chinensis OX=1590841 G...	[more]
tr\|A0A0K9RRS6\|A0A0K9RRS6_SPIOL	2.6e-22	88.31	Uncharacterized protein OS=Spinacia oleracea OX=3562 GN=SOVF_041900 PE=4 SV=1	[more]
tr\|A0A200QVP3\|A0A200QVP3_9MAGN	5.7e-22	77.92	Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_1037g53 PE=4 SV=1	[more]
tr\|A0A0A0KGH9\|A0A0A0KGH9_CUCSA	7.4e-22	89.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G419460 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04630-RA	Carg04630-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33834:SF3	SUBFAMILY NOT NAMED	coord: 1..77
None	No IPR available	PANTHER	PTHR33834	FAMILY NOT NAMED	coord: 1..77

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg04630	Cla016269	Watermelon (97103) v1	carwmB0380
Carg04630	Csa6G419460	Cucumber (Chinese Long) v2	carcuB0421
Carg04630	ClCG09G011370	Watermelon (Charleston Gray)	carwcgB0378
Carg04630	CSPI06G22470	Wild cucumber (PI 183967)	carcpiB0425
Carg04630	Cucsa.184950	Cucumber (Gy14) v1	carcgyB0453
Carg04630	CmaCh11G019200	Cucurbita maxima (Rimu)	carcmaB0537
Carg04630	CmaCh19G010330	Cucurbita maxima (Rimu)	carcmaB0547
Carg04630	CmoCh19G010650	Cucurbita moschata (Rifu)	carcmoB0532
Carg04630	Cp4.1LG04g02710	Cucurbita pepo (Zucchini)	carcpeB0547
Carg04630	Cp4.1LG15g08510	Cucurbita pepo (Zucchini)	carcpeB0541
Carg04630	CsGy6G021710	Cucumber (Gy14) v2	carcgybB0398
Carg04630	CsaV3_6G037590	Cucumber (Chinese Long) v3	carcucB0423
Carg04630	Cla97C09G174090	Watermelon (97103) v2	carwmbB0418

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg04630	Carg15720	Silver-seed gourd	carcarB415

The following block(s) are covering this gene:


Gene	Organism	Block
Carg04630	Cucurbita moschata (Rifu)	carcmoB0523
Carg04630	Bottle gourd (USVL1VR-Ls)	carlsiB352
Carg04630	Watermelon (97103) v1	carwmB0382
Carg04630	Watermelon (97103) v2	carwmbB0416