Carg15720 (gene) Silver-seed gourd

Overview
NameCarg15720
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionTransmembrane protein
LocationCucurbita_argyrosperma_scaffold_081 : 499856 .. 500499 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTTAAGTTTTAAGAATATATTAAAGAAGCGTGGGAAATACGAAATTTCATTAGAAAAATGCGAACTTTCCGGTTGTCATTTAAGACTTGCTTTGCGCAGAAGTCATATGCGCTGCTCATCTGTGCACTCTTTGGTCCAACCCCTTCAATAAGATAAAACCAATGGAGAGAATCGCTTTCACAGACATGCCCCATTTGTCACATATTCTGAGCATCTTTTTCATTTCAGCAGTGCGATTCCGATCATCACCCAGAAATTGAGGTGAAACTCAGACAATTCTCGAAAGAAGATGTGTTGCGGAGATGGCGATTGTAGGCCGCTCGGCTTCTTGCTCGGCTTGCCTTTTGCTTTCCTTTCTCTCATCCTTTCCATCATCGGCGTAATCATCTGGATTGTGGGGTAAATTTCTCAAAACCCCTTCAACTTTTAGCTTCTAGGGTTTTTCTCATTTGGTTCGTTTCTTCTAAATCTGTCGCCCTTTCCATTTATCTGTGTTTTCTGTGCGATTTTGCGTGCAGATTGACGCTTACTTGCATATGTCCTTGTTGTTTGTGCTTGACGGTGATAGTGGAGCTTGCGCTGGGGCTGATCAAAGCCCCAATTCATGTCATGGAGTGGTTCACTTCCCAGATTCCTTGTTGA

mRNA sequence

TTTTTAAGTTTTAAGAATATATTAAAGAAGCGTGGGAAATACGAAATTTCATTAGAAAAATGCGAACTTTCCGGTTGTCATTTAAGACTTGCTTTGCGCAGAAGTCATATGCGCTGCTCATCTGTGCACTCTTTGGTCCAACCCCTTCAATAAGATAAAACCAATGGAGAGAATCGCTTTCACAGACATGCCCCATTTGTCACATATTCTGAGCATCTTTTTCATTTCAGCAGTGCGATTCCGATCATCACCCAGAAATTGAGGTGAAACTCAGACAATTCTCGAAAGAAGATGTGTTGCGGAGATGGCGATTGTAGGCCGCTCGGCTTCTTGCTCGGCTTGCCTTTTGCTTTCCTTTCTCTCATCCTTTCCATCATCGGCGTAATCATCTGGATTGTGGGATTGACGCTTACTTGCATATGTCCTTGTTGTTTGTGCTTGACGGTGATAGTGGAGCTTGCGCTGGGGCTGATCAAAGCCCCAATTCATGTCATGGAGTGGTTCACTTCCCAGATTCCTTGTTGA

Coding sequence (CDS)

ATGTGTTGCGGAGATGGCGATTGTAGGCCGCTCGGCTTCTTGCTCGGCTTGCCTTTTGCTTTCCTTTCTCTCATCCTTTCCATCATCGGCGTAATCATCTGGATTGTGGGATTGACGCTTACTTGCATATGTCCTTGTTGTTTGTGCTTGACGGTGATAGTGGAGCTTGCGCTGGGGCTGATCAAAGCCCCAATTCATGTCATGGAGTGGTTCACTTCCCAGATTCCTTGTTGA

Protein sequence

MCCGDGDCRPLGFLLGLPFAFLSLILSIIGVIIWIVGLTLTCICPCCLCLTVIVELALGLIKAPIHVMEWFTSQIPC
Homology
[Close]
BLAST of Carg15720 vs. NCBI nr
Match: XP_022952103.1 (uncharacterized protein LOC111454865 [Cucurbita moschata] >XP_023554082.1 uncharacterized protein LOC111811456 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 112.8 bits (281), Expect = 5.0e-22
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MCCGDGDCRPLGFLLGLPFAFLSLILSIIGVIIWIVGXXXXXXXXXXXXXXXXXXXXXGL 60
          MCCGDGDCRPLGFLLGLPFAFLSLILSIIGVIIWIVGXXXXXXXXXXXXXXXXXXXXXGL
Sbjct: 1  MCCGDGDCRPLGFLLGLPFAFLSLILSIIGVIIWIVGXXXXXXXXXXXXXXXXXXXXXGL 60

Query: 61 IKAPIHVMEWFTSQIPC 78
          IKAPIHVMEWFTSQIPC
Sbjct: 61 IKAPIHVMEWFTSQIPC 77

[Close]
BLAST of Carg15720 vs. NCBI nr
Match: XP_022969314.1 (uncharacterized protein LOC111468358 [Cucurbita maxima])

HSP 1 Score: 109.8 bits (273), Expect = 4.3e-21
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 0 

Query: 1  MCCGDGDCRPLGFLLGLPFAFLSLILSIIGVIIWIVGXXXXXXXXXXXXXXXXXXXXXGL 60
          MCCGDGDCRPLGFLLGLPFAFLSLILSI+GVIIWIV XXXXXXXXXXXXXXXXXXXXXGL
Sbjct: 1  MCCGDGDCRPLGFLLGLPFAFLSLILSIVGVIIWIVXXXXXXXXXXXXXXXXXXXXXXGL 60

Query: 61 IKAPIHVMEWFTSQIPC 78
          IKAPIHVMEWFTSQIPC
Sbjct: 61 IKAPIHVMEWFTSQIPC 77

[Close]
BLAST of Carg15720 vs. NCBI nr
Match: XP_024987348.1 (uncharacterized protein LOC112522459 [Cynara cardunculus var. scolymus])

HSP 1 Score: 107.8 bits (268), Expect = 1.6e-20
Identity = 64/77 (83.12%), Postives = 68/77 (88.31%), Query Frame = 0 

Query: 1  MCCGDGDCRPLGFLLGLPFAFLSLILSIIGVIIWIVGXXXXXXXXXXXXXXXXXXXXXGL 60
          MCCGDGDCRPLGFLLGLPFAFLSL+LSI+GV++WIVG    XXXXXXXXXXXXX     L
Sbjct: 1  MCCGDGDCRPLGFLLGLPFAFLSLLLSIVGVVVWIVGLLLTXXXXXXXXXXXXXEIAIEL 60

Query: 61 IKAPIHVMEWFTSQIPC 78
          IKAPIHVMEWFTSQIPC
Sbjct: 61 IKAPIHVMEWFTSQIPC 77

[Close]
BLAST of Carg15720 vs. NCBI nr
Match: XP_004140113.1 (PREDICTED: uncharacterized protein LOC101206994 [Cucumis sativus] >KGN47949.1 hypothetical protein Csa_6G419460 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 2.8e-20
Identity = 72/77 (93.51%), Postives = 73/77 (94.81%), Query Frame = 0 

Query: 1  MCCGDGDCRPLGFLLGLPFAFLSLILSIIGVIIWIVGXXXXXXXXXXXXXXXXXXXXXGL 60
          MCCGDGDCRPLGFLLGLPFAF+SLILSIIGVIIWIVG XXXXXXXXXXXXXXXXXXX  L
Sbjct: 1  MCCGDGDCRPLGFLLGLPFAFVSLILSIIGVIIWIVGLXXXXXXXXXXXXXXXXXXXLEL 60

Query: 61 IKAPIHVMEWFTSQIPC 78
          IKAP HVMEWFTSQIPC
Sbjct: 61 IKAPFHVMEWFTSQIPC 77

[Close]
BLAST of Carg15720 vs. NCBI nr
Match: XP_023766152.1 (uncharacterized protein LOC111914685 [Lactuca sativa] >PLY83748.1 hypothetical protein LSAT_4X27781 [Lactuca sativa])

HSP 1 Score: 106.7 bits (265), Expect = 3.6e-20
Identity = 72/77 (93.51%), Postives = 76/77 (98.70%), Query Frame = 0 

Query: 1  MCCGDGDCRPLGFLLGLPFAFLSLILSIIGVIIWIVGXXXXXXXXXXXXXXXXXXXXXGL 60
          MCCGDGDCRPLGFLLGLPFAFLSL+LSIIGV++WIVGXXXXXXXXXXXXXXXXXXXXX L
Sbjct: 1  MCCGDGDCRPLGFLLGLPFAFLSLLLSIIGVVVWIVGXXXXXXXXXXXXXXXXXXXXXEL 60

Query: 61 IKAPIHVMEWFTSQIPC 78
          IKAPIHVMEWFTS+IPC
Sbjct: 61 IKAPIHVMEWFTSKIPC 77

[Close]
BLAST of Carg15720 vs. TAIR10
Match: AT2G31090.1 (unknown protein)

HSP 1 Score: 97.8 bits (242), Expect = 3.0e-21
Identity = 60/77 (77.92%), Postives = 62/77 (80.52%), Query Frame = 0 

Query: 1  MCCGDGDCRPLGFLLGLPFAFLSLILSIIGVIIWIVGXXXXXXXXXXXXXXXXXXXXXGL 60
          MC  DGDCRPLGFLLGLPFAFLSL+LSIIGVIIWIVG      XXXXXXXXX      GL
Sbjct: 1  MC--DGDCRPLGFLLGLPFAFLSLLLSIIGVIIWIVGLLLSCIXXXXXXXXXLVEIAIGL 60

Query: 61 IKAPIHVMEWFTSQIPC 78
          IKAPIHVMEWF S+IPC
Sbjct: 61 IKAPIHVMEWFMSKIPC 75

[Close]
BLAST of Carg15720 vs. TAIR10
Match: AT2G20562.1 (unknown protein)

HSP 1 Score: 45.8 bits (107), Expect = 1.4e-05
Identity = 31/72 (43.06%), Postives = 33/72 (45.83%), Query Frame = 0 

Query: 6  GDCRPLGFLLGLPFAFLSLILSIIGVIIWIVGXXXXXXXXXXXXXXXXXXXXXGLIKAPI 65
          GDCRPLGFL+GLPFA                 XXXXX                 LIK PI
Sbjct: 2  GDCRPLGFLIGLPFAXXXXXXXXXXXXXXXXXXXXXXLCPCCFCFAALANFAVDLIKLPI 61

Query: 66 HVMEWFTSQIPC 78
           V+ WFT  IPC
Sbjct: 62 KVLRWFTHSIPC 73

[Close]
BLAST of Carg15720 vs. TrEMBL
Match: tr|A0A0A0KGH9|A0A0A0KGH9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G419460 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.8e-20
Identity = 72/77 (93.51%), Postives = 73/77 (94.81%), Query Frame = 0 

Query: 1  MCCGDGDCRPLGFLLGLPFAFLSLILSIIGVIIWIVGXXXXXXXXXXXXXXXXXXXXXGL 60
          MCCGDGDCRPLGFLLGLPFAF+SLILSIIGVIIWIVG XXXXXXXXXXXXXXXXXXX  L
Sbjct: 1  MCCGDGDCRPLGFLLGLPFAFVSLILSIIGVIIWIVGLXXXXXXXXXXXXXXXXXXXLEL 60

Query: 61 IKAPIHVMEWFTSQIPC 78
          IKAP HVMEWFTSQIPC
Sbjct: 61 IKAPFHVMEWFTSQIPC 77

[Close]
BLAST of Carg15720 vs. TrEMBL
Match: tr|A0A2J6L8V2|A0A2J6L8V2_LACSA (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_4X27781 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.4e-20
Identity = 72/77 (93.51%), Postives = 76/77 (98.70%), Query Frame = 0 

Query: 1  MCCGDGDCRPLGFLLGLPFAFLSLILSIIGVIIWIVGXXXXXXXXXXXXXXXXXXXXXGL 60
          MCCGDGDCRPLGFLLGLPFAFLSL+LSIIGV++WIVGXXXXXXXXXXXXXXXXXXXXX L
Sbjct: 1  MCCGDGDCRPLGFLLGLPFAFLSLLLSIIGVVVWIVGXXXXXXXXXXXXXXXXXXXXXEL 60

Query: 61 IKAPIHVMEWFTSQIPC 78
          IKAPIHVMEWFTS+IPC
Sbjct: 61 IKAPIHVMEWFTSKIPC 77

[Close]
BLAST of Carg15720 vs. TrEMBL
Match: tr|A0A2R6QBZ6|A0A2R6QBZ6_ACTCH (Protein strawberry notch like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc18927 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.4e-20
Identity = 50/77 (64.94%), Postives = 55/77 (71.43%), Query Frame = 0 

Query: 1   MCCGDGDCRPLGFLLGLPFAFLSLILSIIGVIIWIVGXXXXXXXXXXXXXXXXXXXXXGL 60
           MCCGDGDCRPLGFLLGLPFAFLSL+L+I+G++IWIVG                      L
Sbjct: 39  MCCGDGDCRPLGFLLGLPFAFLSLLLTIVGIVIWIVGLMLTCICPCFLCLTIIVELALEL 98

Query: 61  IKAPIHVMEWFTSQIPC 78
           IKAPIHVMEWFTSQIPC
Sbjct: 99  IKAPIHVMEWFTSQIPC 115

[Close]
BLAST of Carg15720 vs. TrEMBL
Match: tr|A0A1S3BLY0|A0A1S3BLY0_CUCME (uncharacterized protein LOC103491288 OS=Cucumis melo OX=3656 GN=LOC103491288 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.1e-20
Identity = 71/77 (92.21%), Postives = 73/77 (94.81%), Query Frame = 0 

Query: 1  MCCGDGDCRPLGFLLGLPFAFLSLILSIIGVIIWIVGXXXXXXXXXXXXXXXXXXXXXGL 60
          MCCGDGDCRPLGFLLGLPFAF+SL+LSIIGVIIWIVG XXXXXXXXXXXXXXXXXXX  L
Sbjct: 1  MCCGDGDCRPLGFLLGLPFAFVSLLLSIIGVIIWIVGLXXXXXXXXXXXXXXXXXXXLEL 60

Query: 61 IKAPIHVMEWFTSQIPC 78
          IKAP HVMEWFTSQIPC
Sbjct: 61 IKAPFHVMEWFTSQIPC 77

[Close]
BLAST of Carg15720 vs. TrEMBL
Match: tr|B9IQQ0|B9IQQ0_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G090500v3 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.1e-20
Identity = 61/77 (79.22%), Postives = 64/77 (83.12%), Query Frame = 0 

Query: 1  MCCGDGDCRPLGFLLGLPFAFLSLILSIIGVIIWIVGXXXXXXXXXXXXXXXXXXXXXGL 60
          MCCGDGDCRPLGFLLGLPFAFLSLI+S +GV+IWIVG      XXXXXXXXXX      L
Sbjct: 1  MCCGDGDCRPLGFLLGLPFAFLSLIISAVGVVIWIVGLLLSCVXXXXXXXXXXVELALEL 60

Query: 61 IKAPIHVMEWFTSQIPC 78
          IKAPIHVMEWFTSQIPC
Sbjct: 61 IKAPIHVMEWFTSQIPC 77

The following BLAST results are available for this feature:
BLAST of Carg15720 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022952103.15.0e-22100.00uncharacterized protein LOC111454865 [Cucurbita moschata] >XP_023554082.1 unchar... [more]
XP_022969314.14.3e-2197.40uncharacterized protein LOC111468358 [Cucurbita maxima][more]
XP_024987348.11.6e-2083.12uncharacterized protein LOC112522459 [Cynara cardunculus var. scolymus][more]
XP_004140113.12.8e-2093.51PREDICTED: uncharacterized protein LOC101206994 [Cucumis sativus] >KGN47949.1 hy... [more]
XP_023766152.13.6e-2093.51uncharacterized protein LOC111914685 [Lactuca sativa] >PLY83748.1 hypothetical p... [more]
BLAST of Carg15720 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G31090.13.0e-2177.92unknown protein[more]
AT2G20562.11.4e-0543.06unknown protein[more]
BLAST of Carg15720 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg15720 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KGH9|A0A0A0KGH9_CUCSA1.8e-2093.51Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G419460 PE=4 SV=1[more]
tr|A0A2J6L8V2|A0A2J6L8V2_LACSA2.4e-2093.51Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_4X27781 PE=4 SV=1[more]
tr|A0A2R6QBZ6|A0A2R6QBZ6_ACTCH2.4e-2064.94Protein strawberry notch like OS=Actinidia chinensis var. chinensis OX=1590841 G... [more]
tr|A0A1S3BLY0|A0A1S3BLY0_CUCME3.1e-2092.21uncharacterized protein LOC103491288 OS=Cucumis melo OX=3656 GN=LOC103491288 PE=... [more]
tr|B9IQQ0|B9IQQ0_POPTR3.1e-2079.22Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G090500v3 PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg15720-RACarg15720-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33834FAMILY NOT NAMEDcoord: 1..77
NoneNo IPR availablePANTHERPTHR33834:SF3SUBFAMILY NOT NAMEDcoord: 1..77

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg15720Carg04630Silver-seed gourdcarcarB415
The following block(s) are covering this gene:

None