Carg04630-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg04630-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transmembrane protein
Location	Cucurbita_argyrosperma_scaffold_028 : 126433 .. 126831 (-)
Sequence length	257

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAGAATCCCAACAAAGATGTGCTGTGGAGATGGCGATTGTAGGCCATTGGGCTTCTTGCTCGGCTTGCCTTTTGCATTCGTTTCTCTTATTCTTTCCCTGGTCGGCGTAATTATCTGGATTGTCGGGTAAATTTGTCGAATCTCCTTTAATTTTTAGCTTCTGGGTGTTCATGATTTGGTTTGTTTCGTCTGAATCTGATGCCCCTTTTCACTTTTCTATCGATTTCTATCGATTCATGACTGTATTTGCTCTGGGTTTTCGCTGCAGATTGACGCTTTCTTGCATATGTCCTTGTTGCTTGTGCTTGACGGTGATAGTGGAGCTAGCGTTGGAGCTGATCAAAGCCCCAATTCATGTCATGCAGTGGTTTACTTCCCAGATTCCTTGTTGA

mRNA sequence

AAAAAAAAAGAATCCCAACAAAGATGTGCTGTGGAGATGGCGATTGTAGGCCATTGGGCTTCTTGCTCGGCTTGCCTTTTGCATTCGTTTCTCTTATTCTTTCCCTGGTCGGCGTAATTATCTGGATTGTCGGATTGACGCTTTCTTGCATATGTCCTTGTTGCTTGTGCTTGACGGTGATAGTGGAGCTAGCGTTGGAGCTGATCAAAGCCCCAATTCATGTCATGCAGTGGTTTACTTCCCAGATTCCTTGTTGA

Coding sequence (CDS)

ATGTGCTGTGGAGATGGCGATTGTAGGCCATTGGGCTTCTTGCTCGGCTTGCCTTTTGCATTCGTTTCTCTTATTCTTTCCCTGGTCGGCGTAATTATCTGGATTGTCGGATTGACGCTTTCTTGCATATGTCCTTGTTGCTTGTGCTTGACGGTGATAGTGGAGCTAGCGTTGGAGCTGATCAAAGCCCCAATTCATGTCATGCAGTGGTTTACTTCCCAGATTCCTTGTTGA

Protein sequence

MCCGDGDCRPLGFLLGLPFAFVSLILSLVGVIIWIVGLTLSCICPCCLCLTVIVELALELIKAPIHVMQWFTSQIPC

Homology

[Close]

BLAST of Carg04630-RA vs. NCBI nr
Match: XP_022930666.1 (uncharacterized protein LOC111437071 [Cucurbita moschata] >XP_022930667.1 uncharacterized protein LOC111437071 [Cucurbita moschata] >XP_023530442.1 uncharacterized protein LOC111793011 [Cucurbita pepo subsp. pepo] >XP_023530443.1 uncharacterized protein LOC111793011 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124.0 bits (310), Expect = 2.2e-25
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MCCGDGDCRPLGFLLGLPFAFVSLILSLVGVIIWIVGLTXXXXXXXXXXXXXXXELALEL 60
          MCCGDGDCRPLGFLLGLPFAFVSLILSLVGVIIWIVGLTXXXXXXXXXXXXXXXELALEL
Sbjct: 1  MCCGDGDCRPLGFLLGLPFAFVSLILSLVGVIIWIVGLTXXXXXXXXXXXXXXXELALEL 60

Query: 61 IKAPIHVMQWFTSQIPC 78
          IKAPIHVMQWFTSQIPC
Sbjct: 61 IKAPIHVMQWFTSQIPC 77

[Close]

BLAST of Carg04630-RA vs. NCBI nr
Match: XP_022989078.1 (uncharacterized protein LOC111486258 [Cucurbita maxima] >XP_022989079.1 uncharacterized protein LOC111486258 [Cucurbita maxima])

HSP 1 Score: 122.5 bits (306), Expect = 6.4e-25
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MCCGDGDCRPLGFLLGLPFAFVSLILSLVGVIIWIVGLTXXXXXXXXXXXXXXXELALEL 60
          MCCGDGDCRPLGFLLGLPFAFVSLILSLVGVIIWIVGLTXXXXXXXXXXXXXXXELALEL
Sbjct: 1  MCCGDGDCRPLGFLLGLPFAFVSLILSLVGVIIWIVGLTXXXXXXXXXXXXXXXELALEL 60

Query: 61 IKAPIHVMQWFTSQIPC 78
          IKAPIHVMQWFTS+IPC
Sbjct: 61 IKAPIHVMQWFTSKIPC 77

[Close]

BLAST of Carg04630-RA vs. NCBI nr
Match: XP_002326022.1 (uncharacterized protein LOC7494601 [Populus trichocarpa] >PNS91253.1 hypothetical protein POPTR_019G090500v3 [Populus trichocarpa])

HSP 1 Score: 116.3 bits (290), Expect = 4.6e-23
Identity = 66/77 (85.71%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 1  MCCGDGDCRPLGFLLGLPFAFVSLILSLVGVIIWIVGLTXXXXXXXXXXXXXXXELALEL 60
          MCCGDGDCRPLGFLLGLPFAF+SLI+S VGV+IWIVGL     XXXXXXXXXX ELALEL
Sbjct: 1  MCCGDGDCRPLGFLLGLPFAFLSLIISAVGVVIWIVGLLLSCVXXXXXXXXXXVELALEL 60

Query: 61 IKAPIHVMQWFTSQIPC 78
          IKAPIHVM+WFTSQIPC
Sbjct: 61 IKAPIHVMEWFTSQIPC 77

[Close]

BLAST of Carg04630-RA vs. NCBI nr
Match: PSS05658.1 (Protein strawberry notch like [Actinidia chinensis var. chinensis])

HSP 1 Score: 115.9 bits (289), Expect = 6.0e-23
Identity = 54/77 (70.13%), Postives = 61/77 (79.22%), Query Frame = 0


Query: 1   MCCGDGDCRPLGFLLGLPFAFVSLILSLVGVIIWIVGLTXXXXXXXXXXXXXXXELALEL 60
           MCCGDGDCRPLGFLLGLPFAF+SL+L++VG++IWIVGL                ELALEL
Sbjct: 39  MCCGDGDCRPLGFLLGLPFAFLSLLLTIVGIVIWIVGLMLTCICPCFLCLTIIVELALEL 98

Query: 61  IKAPIHVMQWFTSQIPC 78
           IKAPIHVM+WFTSQIPC
Sbjct: 99  IKAPIHVMEWFTSQIPC 115

[Close]

BLAST of Carg04630-RA vs. NCBI nr
Match: XP_024987348.1 (uncharacterized protein LOC112522459 [Cynara cardunculus var. scolymus])

HSP 1 Score: 115.5 bits (288), Expect = 7.8e-23
Identity = 66/77 (85.71%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MCCGDGDCRPLGFLLGLPFAFVSLILSLVGVIIWIVGLTXXXXXXXXXXXXXXXELALEL 60
          MCCGDGDCRPLGFLLGLPFAF+SL+LS+VGV++WIVGL   XXXXXXXXXXXXXE+A+EL
Sbjct: 1  MCCGDGDCRPLGFLLGLPFAFLSLLLSIVGVVVWIVGLLLTXXXXXXXXXXXXXEIAIEL 60

Query: 61 IKAPIHVMQWFTSQIPC 78
          IKAPIHVM+WFTSQIPC
Sbjct: 61 IKAPIHVMEWFTSQIPC 77

[Close]

BLAST of Carg04630-RA vs. TAIR10
Match: AT2G31090.1 (unknown protein)

HSP 1 Score: 99.0 bits (245), Expect = 1.4e-21
Identity = 58/77 (75.32%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 1  MCCGDGDCRPLGFLLGLPFAFVSLILSLVGVIIWIVGLTXXXXXXXXXXXXXXXELALEL 60
          MC  DGDCRPLGFLLGLPFAF+SL+LS++GVIIWIVGL     XXXXXXXXX  E+A+ L
Sbjct: 1  MC--DGDCRPLGFLLGLPFAFLSLLLSIIGVIIWIVGLLLSCIXXXXXXXXXLVEIAIGL 60

Query: 61 IKAPIHVMQWFTSQIPC 78
          IKAPIHVM+WF S+IPC
Sbjct: 61 IKAPIHVMEWFMSKIPC 75

[Close]

BLAST of Carg04630-RA vs. TAIR10
Match: AT2G20562.1 (unknown protein)

HSP 1 Score: 50.1 bits (118), Expect = 7.3e-07
Identity = 30/72 (41.67%), Postives = 35/72 (48.61%), Query Frame = 0


Query: 6  GDCRPLGFLLGLPFAFVSLILSLVGVIIWIVGLTXXXXXXXXXXXXXXXELALELIKAPI 65
          GDCRPLGFL+GLPFA                   XXX              A++LIK PI
Sbjct: 2  GDCRPLGFLIGLPFAXXXXXXXXXXXXXXXXXXXXXXLCPCCFCFAALANFAVDLIKLPI 61

Query: 66 HVMQWFTSQIPC 78
           V++WFT  IPC
Sbjct: 62 KVLRWFTHSIPC 73

[Close]

BLAST of Carg04630-RA vs. TrEMBL
Match: tr|B9IQQ0|B9IQQ0_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G090500v3 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 3.0e-23
Identity = 66/77 (85.71%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 1  MCCGDGDCRPLGFLLGLPFAFVSLILSLVGVIIWIVGLTXXXXXXXXXXXXXXXELALEL 60
          MCCGDGDCRPLGFLLGLPFAF+SLI+S VGV+IWIVGL     XXXXXXXXXX ELALEL
Sbjct: 1  MCCGDGDCRPLGFLLGLPFAFLSLIISAVGVVIWIVGLLLSCVXXXXXXXXXXVELALEL 60

Query: 61 IKAPIHVMQWFTSQIPC 78
          IKAPIHVM+WFTSQIPC
Sbjct: 61 IKAPIHVMEWFTSQIPC 77

[Close]

BLAST of Carg04630-RA vs. TrEMBL
Match: tr|A0A2R6QBZ6|A0A2R6QBZ6_ACTCH (Protein strawberry notch like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc18927 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.9e-23
Identity = 54/77 (70.13%), Postives = 61/77 (79.22%), Query Frame = 0


Query: 1   MCCGDGDCRPLGFLLGLPFAFVSLILSLVGVIIWIVGLTXXXXXXXXXXXXXXXELALEL 60
           MCCGDGDCRPLGFLLGLPFAF+SL+L++VG++IWIVGL                ELALEL
Sbjct: 39  MCCGDGDCRPLGFLLGLPFAFLSLLLTIVGIVIWIVGLMLTCICPCFLCLTIIVELALEL 98

Query: 61  IKAPIHVMQWFTSQIPC 78
           IKAPIHVM+WFTSQIPC
Sbjct: 99  IKAPIHVMEWFTSQIPC 115

[Close]

BLAST of Carg04630-RA vs. TrEMBL
Match: tr|A0A0K9RRS6|A0A0K9RRS6_SPIOL (Uncharacterized protein OS=Spinacia oleracea OX=3562 GN=SOVF_041900 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.6e-22
Identity = 68/77 (88.31%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MCCGDGDCRPLGFLLGLPFAFVSLILSLVGVIIWIVGLTXXXXXXXXXXXXXXXELALEL 60
          MCCGDGDCRPLGFLLGLPFAF+ L++S+VG+IIWIVGLTXXXXXXXXXXXXXXX LALEL
Sbjct: 1  MCCGDGDCRPLGFLLGLPFAFLCLLISIVGIIIWIVGLTXXXXXXXXXXXXXXXXLALEL 60

Query: 61 IKAPIHVMQWFTSQIPC 78
          IKAPIHVM+WFTS+IPC
Sbjct: 61 IKAPIHVMEWFTSKIPC 77

[Close]

BLAST of Carg04630-RA vs. TrEMBL
Match: tr|A0A200QVP3|A0A200QVP3_9MAGN (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_1037g53 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 5.7e-22
Identity = 60/77 (77.92%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 1  MCCGDGDCRPLGFLLGLPFAFVSLILSLVGVIIWIVGLTXXXXXXXXXXXXXXXELALEL 60
          MCC DGDCRPLGFLLGLPFAF+SL+LS++GV+IWIVGL     XXXXXXX    ELALEL
Sbjct: 1  MCCCDGDCRPLGFLLGLPFAFLSLLLSIIGVVIWIVGLLLTCIXXXXXXXTIIVELALEL 60

Query: 61 IKAPIHVMQWFTSQIPC 78
          IKAPIHVM+WFTS+IPC
Sbjct: 61 IKAPIHVMEWFTSKIPC 77

[Close]

BLAST of Carg04630-RA vs. TrEMBL
Match: tr|A0A0A0KGH9|A0A0A0KGH9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G419460 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 7.4e-22
Identity = 69/77 (89.61%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 1  MCCGDGDCRPLGFLLGLPFAFVSLILSLVGVIIWIVGLTXXXXXXXXXXXXXXXELALEL 60
          MCCGDGDCRPLGFLLGLPFAFVSLILS++GVIIWIVGL XXXXXXXXXXXXXXX   LEL
Sbjct: 1  MCCGDGDCRPLGFLLGLPFAFVSLILSIIGVIIWIVGLXXXXXXXXXXXXXXXXXXXLEL 60

Query: 61 IKAPIHVMQWFTSQIPC 78
          IKAP HVM+WFTSQIPC
Sbjct: 61 IKAPFHVMEWFTSQIPC 77

The following BLAST results are available for this feature:

BLAST of Carg04630-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930666.1	2.2e-25	100.00	uncharacterized protein LOC111437071 [Cucurbita moschata] >XP_022930667.1 unchar...	[more]
XP_022989078.1	6.4e-25	98.70	uncharacterized protein LOC111486258 [Cucurbita maxima] >XP_022989079.1 uncharac...	[more]
XP_002326022.1	4.6e-23	85.71	uncharacterized protein LOC7494601 [Populus trichocarpa] >PNS91253.1 hypothetica...	[more]
PSS05658.1	6.0e-23	70.13	Protein strawberry notch like [Actinidia chinensis var. chinensis]	[more]
XP_024987348.1	7.8e-23	85.71	uncharacterized protein LOC112522459 [Cynara cardunculus var. scolymus]	[more]

BLAST of Carg04630-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT2G31090.1	1.4e-21	75.32	unknown protein	[more]
AT2G20562.1	7.3e-07	41.67	unknown protein	[more]

BLAST of Carg04630-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg04630-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|B9IQQ0\|B9IQQ0_POPTR	3.0e-23	85.71	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G090500v3 PE=...	[more]
tr\|A0A2R6QBZ6\|A0A2R6QBZ6_ACTCH	3.9e-23	70.13	Protein strawberry notch like OS=Actinidia chinensis var. chinensis OX=1590841 G...	[more]
tr\|A0A0K9RRS6\|A0A0K9RRS6_SPIOL	2.6e-22	88.31	Uncharacterized protein OS=Spinacia oleracea OX=3562 GN=SOVF_041900 PE=4 SV=1	[more]
tr\|A0A200QVP3\|A0A200QVP3_9MAGN	5.7e-22	77.92	Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_1037g53 PE=4 SV=1	[more]
tr\|A0A0A0KGH9\|A0A0A0KGH9_CUCSA	7.4e-22	89.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G419460 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg04630	Carg04630	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg04630-RA.CDS.2	Carg04630-RA.CDS.2	CDS
Carg04630-RA.CDS.1	Carg04630-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg04630-RA.five_prime_UTR.1	Carg04630-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg04630-RA.exon.2	Carg04630-RA.exon.2	exon
Carg04630-RA.exon.1	Carg04630-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg04630-RA	Carg04630-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33834:SF3	SUBFAMILY NOT NAMED	coord: 1..77
None	No IPR available	PANTHER	PTHR33834	FAMILY NOT NAMED	coord: 1..77