Carg23313 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23313
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Gigantea
Location	Cucurbita_argyrosperma_scaffold_188 : 252026 .. 252850 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAACGCCGTGCCATGAAGTTCATAAGCTGGTGGATATCATGTATATTCCATTTCATTTCTTCCATGGAGTCATCGCACGGTTGGTCAATGTTCGTGGGATGGGACAGGGGTTGCTCCACCAATGGATAAGGTGGGATTTGTCTTTCCCCACCATTAGGTCCTTTCTTAGAAAGTAGTCTGATACCAAAACTGATGCAATCACCTTGCTGGAAAATTTCTATATCAAGAAAAAACTGCTTTTTGTAACAAATAAGGCTCCGATATAGAGGGTAGCCACACTGACCAAATAACAAACTAAGCAAACAGCCAAATAATAATAAAATAAAAAACCAAGAAAACAATCGATGATAGCTAACCAAATTAACAGCTTAAAGAAGTTTATTTATTATTATTATTTTTTTTAAAGGCACAACCTGAAAACTACACCACTATAATGGTTTCACTAATTCACTGTACATCTTGTGTTTTATTTTGAGGTAGCTTTATTTTCTGATATATATTCTATAGTTATGAATAATGGCAAGATGCATTATGAATACTTTTTACCCCATCAGAACCATTATTCTGAACAATGGGCCCTTGCATGTGGGGAGATACTCCGGATCTTGACTCATTACAATCGGCCAATATACAAGACGGAACAAAAGAATGGTGAAACAGAAAGAAGCAATAGTGGCTGCGTTGCTACGTCTCGTGACACCAATGATGGGGAATTTGTTCAAGTGCCTCTGCAACACGAGAGGAAACCTATAAGACCTTTGTCCCCATGGATTACTGACATATTGCTTGCTGCACCATTGGGCATCAGAAGCGACTATTTCCGC

mRNA sequence

TAAACGCCGTGCCATGAAGTTCATAAGCTGGTGGATATCATGTATATTCCATTTCATTTCTTCCATGGAGTCATCGCACGGTTGGTCAATGTTCGTGGGATGGGACAGGGGTTGCTCCACCAATGGATAAGAACCATTATTCTGAACAATGGGCCCTTGCATGTGGGGAGATACTCCGGATCTTGACTCATTACAATCGGCCAATATACAAGACGGAACAAAAGAATGGTGAAACAGAAAGAAGCAATAGTGGCTGCGTTGCTACGTCTCGTGACACCAATGATGGGGAATTTGTTCAAGTGCCTCTGCAACACGAGAGGAAACCTATAAGACCTTTGTCCCCATGGATTACTGACATATTGCTTGCTGCACCATTGGGCATCAGAAGCGACTATTTCCGC

Coding sequence (CDS)

ATGGATAAGAACCATTATTCTGAACAATGGGCCCTTGCATGTGGGGAGATACTCCGGATCTTGACTCATTACAATCGGCCAATATACAAGACGGAACAAAAGAATGGTGAAACAGAAAGAAGCAATAGTGGCTGCGTTGCTACGTCTCGTGACACCAATGATGGGGAATTTGTTCAAGTGCCTCTGCAACACGAGAGGAAACCTATAAGACCTTTGTCCCCATGGATTACTGACATATTGCTTGCTGCACCATTGGGCATCAGAAGCGACTATTTCCGC

Protein sequence

MDKNHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATSRDTNDGEFVQVPLQHERKPIRPLSPWITDILLAAPLGIRSDYFR

Homology

[Close]

BLAST of Carg23313 vs. NCBI nr
Match: XP_022935847.1 (protein GIGANTEA-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 194.1 bits (492), Expect = 2.1e-46
Identity = 89/91 (97.80%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 3   KNHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATSRDTNDGEFVQVPL 62
           +NHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVAT+RDTNDGEFVQVPL
Sbjct: 124 ENHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATTRDTNDGEFVQVPL 183

Query: 63  QHERKPIRPLSPWITDILLAAPLGIRSDYFR 94
           QHERKPIRPLSPWITDILLAAPLGIRSDYFR
Sbjct: 184 QHERKPIRPLSPWITDILLAAPLGIRSDYFR 214

[Close]

BLAST of Carg23313 vs. NCBI nr
Match: XP_022935849.1 (protein GIGANTEA-like isoform X4 [Cucurbita moschata])

HSP 1 Score: 194.1 bits (492), Expect = 2.1e-46
Identity = 89/91 (97.80%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 3   KNHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATSRDTNDGEFVQVPL 62
           +NHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVAT+RDTNDGEFVQVPL
Sbjct: 75  ENHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATTRDTNDGEFVQVPL 134

Query: 63  QHERKPIRPLSPWITDILLAAPLGIRSDYFR 94
           QHERKPIRPLSPWITDILLAAPLGIRSDYFR
Sbjct: 135 QHERKPIRPLSPWITDILLAAPLGIRSDYFR 165

[Close]

BLAST of Carg23313 vs. NCBI nr
Match: XP_022935848.1 (protein GIGANTEA-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 194.1 bits (492), Expect = 2.1e-46
Identity = 89/91 (97.80%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 3   KNHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATSRDTNDGEFVQVPL 62
           +NHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVAT+RDTNDGEFVQVPL
Sbjct: 119 ENHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATTRDTNDGEFVQVPL 178

Query: 63  QHERKPIRPLSPWITDILLAAPLGIRSDYFR 94
           QHERKPIRPLSPWITDILLAAPLGIRSDYFR
Sbjct: 179 QHERKPIRPLSPWITDILLAAPLGIRSDYFR 209

[Close]

BLAST of Carg23313 vs. NCBI nr
Match: XP_022935845.1 (protein GIGANTEA-like isoform X1 [Cucurbita moschata] >XP_022935846.1 protein GIGANTEA-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 194.1 bits (492), Expect = 2.1e-46
Identity = 89/91 (97.80%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 3   KNHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATSRDTNDGEFVQVPL 62
           +NHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVAT+RDTNDGEFVQVPL
Sbjct: 119 ENHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATTRDTNDGEFVQVPL 178

Query: 63  QHERKPIRPLSPWITDILLAAPLGIRSDYFR 94
           QHERKPIRPLSPWITDILLAAPLGIRSDYFR
Sbjct: 179 QHERKPIRPLSPWITDILLAAPLGIRSDYFR 209

[Close]

BLAST of Carg23313 vs. NCBI nr
Match: XP_022935850.1 (protein GIGANTEA-like isoform X5 [Cucurbita moschata])

HSP 1 Score: 185.7 bits (470), Expect = 7.4e-44
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 7   SEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATSRDTNDGEFVQVPLQHER 66
           SEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVAT+RDTNDGEFVQVPLQHER
Sbjct: 33  SEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATTRDTNDGEFVQVPLQHER 92

Query: 67  KPIRPLSPWITDILLAAPLGIRSDYFR 94
           KPIRPLSPWITDILLAAPLGIRSDYFR
Sbjct: 93  KPIRPLSPWITDILLAAPLGIRSDYFR 119

[Close]

BLAST of Carg23313 vs. TAIR10
Match: AT1G22770.1 (gigantea protein (GI))

HSP 1 Score: 140.6 bits (353), Expect = 4.9e-34
Identity = 66/91 (72.53%), Postives = 72/91 (79.12%), Query Frame = 0


Query: 3   KNHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATSRDTNDGEFVQVPL 62
           +N YSEQWALACGEILRILTHYNRPIYKTEQ+NG+TER+      TS           P 
Sbjct: 121 ENDYSEQWALACGEILRILTHYNRPIYKTEQQNGDTERNCLSKATTSGSPTSEPKAGSPT 180

Query: 63  QHERKPIRPLSPWITDILLAAPLGIRSDYFR 94
           QHERKP+RPLSPWI+DILLAAPLGIRSDYFR
Sbjct: 181 QHERKPLRPLSPWISDILLAAPLGIRSDYFR 211

[Close]

BLAST of Carg23313 vs. Swiss-Prot
Match: sp|Q9SQI2|GIGAN_ARATH (Protein GIGANTEA OS=Arabidopsis thaliana OX=3702 GN=GI PE=1 SV=2)

HSP 1 Score: 140.6 bits (353), Expect = 8.9e-33
Identity = 66/91 (72.53%), Postives = 72/91 (79.12%), Query Frame = 0


Query: 3   KNHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATSRDTNDGEFVQVPL 62
           +N YSEQWALACGEILRILTHYNRPIYKTEQ+NG+TER+      TS           P 
Sbjct: 121 ENDYSEQWALACGEILRILTHYNRPIYKTEQQNGDTERNCLSKATTSGSPTSEPKAGSPT 180

Query: 63  QHERKPIRPLSPWITDILLAAPLGIRSDYFR 94
           QHERKP+RPLSPWI+DILLAAPLGIRSDYFR
Sbjct: 181 QHERKPLRPLSPWISDILLAAPLGIRSDYFR 211

[Close]

BLAST of Carg23313 vs. Swiss-Prot
Match: sp|Q9AWL7|GIGAN_ORYSJ (Protein GIGANTEA OS=Oryza sativa subsp. japonica OX=39947 GN=GI PE=2 SV=2)

HSP 1 Score: 117.9 bits (294), Expect = 6.2e-26
Identity = 56/92 (60.87%), Postives = 71/92 (77.17%), Query Frame = 0


Query: 3   KNHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATSRDTNDGEFVQVPL 62
           +  YSEQWALACGEILR+LTHYNRPI+K + ++ E E S++   A+S ++ +      P 
Sbjct: 121 EKEYSEQWALACGEILRVLTHYNRPIFKVDHQHSEAECSSTSDQASSCESMEKRANGSPR 180

Query: 63  -QHERKPIRPLSPWITDILLAAPLGIRSDYFR 94
            + +RKP+RPLSPWITDILLAAPLGIRSDYFR
Sbjct: 181 NEPDRKPLRPLSPWITDILLAAPLGIRSDYFR 212

[Close]

BLAST of Carg23313 vs. TrEMBL
Match: tr|A0A1S3CG99|A0A1S3CG99_CUCME (protein GIGANTEA-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500402 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.9e-36
Identity = 75/91 (82.42%), Postives = 81/91 (89.01%), Query Frame = 0


Query: 3   KNHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATSRDTNDGEFVQVPL 62
           +N YSEQWALACGEILRILTHYNRPIYK EQKNGETERS+S  +AT+ DT+D E V VP 
Sbjct: 119 ENDYSEQWALACGEILRILTHYNRPIYKMEQKNGETERSSSCSLATTSDTDDRELVGVPQ 178

Query: 63  QHERKPIRPLSPWITDILLAAPLGIRSDYFR 94
           Q ERKP+RPLSPWITDILLAAPLGIRSDYFR
Sbjct: 179 QQERKPVRPLSPWITDILLAAPLGIRSDYFR 209

[Close]

BLAST of Carg23313 vs. TrEMBL
Match: tr|A0A0A0K6B6|A0A0A0K6B6_CUCSA (LATE BLOOMER 1 OS=Cucumis sativus OX=3659 GN=Csa_7G293230 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.9e-36
Identity = 75/90 (83.33%), Postives = 80/90 (88.89%), Query Frame = 0


Query: 4   NHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATSRDTNDGEFVQVPLQ 63
           N YSEQWALACGEILRILTHYNRPIYK E+KNGETERS+SG  AT+ DT+D E V VP Q
Sbjct: 11  NDYSEQWALACGEILRILTHYNRPIYKMERKNGETERSSSGSRATTSDTDDRELVGVPQQ 70

Query: 64  HERKPIRPLSPWITDILLAAPLGIRSDYFR 94
            ERKP+RPLSPWITDILLAAPLGIRSDYFR
Sbjct: 71  QERKPVRPLSPWITDILLAAPLGIRSDYFR 100

[Close]

BLAST of Carg23313 vs. TrEMBL
Match: tr|A0A251MSQ5|A0A251MSQ5_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G040600 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.6e-34
Identity = 74/92 (80.43%), Postives = 80/92 (86.96%), Query Frame = 0


Query: 3   KNHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATSRDTNDGEFVQVPL 62
           +N YSEQWALACGEILRILTHYNRPIYK EQ+N ETERS+SG  AT+ D+ DGE   +PL
Sbjct: 119 ENEYSEQWALACGEILRILTHYNRPIYKVEQQNSETERSSSGSHATTSDSVDGESSHIPL 178

Query: 63  -QHERKPIRPLSPWITDILLAAPLGIRSDYFR 94
            Q ERKPIRPLSPWITDILLAAPLGIRSDYFR
Sbjct: 179 VQQERKPIRPLSPWITDILLAAPLGIRSDYFR 210

[Close]

BLAST of Carg23313 vs. TrEMBL
Match: tr|M5VIM2|M5VIM2_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa000556mg PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.6e-34
Identity = 74/92 (80.43%), Postives = 80/92 (86.96%), Query Frame = 0


Query: 3   KNHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATSRDTNDGEFVQVPL 62
           +N YSEQWALACGEILRILTHYNRPIYK EQ+N ETERS+SG  AT+ D+ DGE   +PL
Sbjct: 47  ENEYSEQWALACGEILRILTHYNRPIYKVEQQNSETERSSSGSHATTSDSVDGESSHIPL 106

Query: 63  -QHERKPIRPLSPWITDILLAAPLGIRSDYFR 94
            Q ERKPIRPLSPWITDILLAAPLGIRSDYFR
Sbjct: 107 VQQERKPIRPLSPWITDILLAAPLGIRSDYFR 138

[Close]

BLAST of Carg23313 vs. TrEMBL
Match: tr|A0A0C4W438|A0A0C4W438_PRUDU (Gigantea OS=Prunus dulcis OX=3755 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.1e-34
Identity = 74/92 (80.43%), Postives = 80/92 (86.96%), Query Frame = 0


Query: 3   KNHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATSRDTNDGEFVQVPL 62
           +N YSEQWALACGEILRILTHYNRPIYK EQ+N ETERS+SG  AT+ D+ DGE   +PL
Sbjct: 119 ENEYSEQWALACGEILRILTHYNRPIYKVEQQNSETERSSSGSHATTSDSVDGESRHIPL 178

Query: 63  -QHERKPIRPLSPWITDILLAAPLGIRSDYFR 94
            Q ERKPIRPLSPWITDILLAAPLGIRSDYFR
Sbjct: 179 VQQERKPIRPLSPWITDILLAAPLGIRSDYFR 210

The following BLAST results are available for this feature:

BLAST of Carg23313 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022935847.1	2.1e-46	97.80	protein GIGANTEA-like isoform X2 [Cucurbita moschata]	[more]
XP_022935849.1	2.1e-46	97.80	protein GIGANTEA-like isoform X4 [Cucurbita moschata]	[more]
XP_022935848.1	2.1e-46	97.80	protein GIGANTEA-like isoform X3 [Cucurbita moschata]	[more]
XP_022935845.1	2.1e-46	97.80	protein GIGANTEA-like isoform X1 [Cucurbita moschata] >XP_022935846.1 protein GI...	[more]
XP_022935850.1	7.4e-44	98.85	protein GIGANTEA-like isoform X5 [Cucurbita moschata]	[more]

BLAST of Carg23313 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G22770.1	4.9e-34	72.53	gigantea protein (GI)	[more]

BLAST of Carg23313 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SQI2\|GIGAN_ARATH	8.9e-33	72.53	Protein GIGANTEA OS=Arabidopsis thaliana OX=3702 GN=GI PE=1 SV=2	[more]
sp\|Q9AWL7\|GIGAN_ORYSJ	6.2e-26	60.87	Protein GIGANTEA OS=Oryza sativa subsp. japonica OX=39947 GN=GI PE=2 SV=2	[more]

BLAST of Carg23313 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CG99\|A0A1S3CG99_CUCME	2.9e-36	82.42	protein GIGANTEA-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500402 PE=4 SV...	[more]
tr\|A0A0A0K6B6\|A0A0A0K6B6_CUCSA	2.9e-36	83.33	LATE BLOOMER 1 OS=Cucumis sativus OX=3659 GN=Csa_7G293230 PE=4 SV=1	[more]
tr\|A0A251MSQ5\|A0A251MSQ5_PRUPE	1.6e-34	80.43	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G040600 PE=4 SV=1	[more]
tr\|M5VIM2\|M5VIM2_PRUPE	1.6e-34	80.43	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa000556mg PE=4 SV=1	[more]
tr\|A0A0C4W438\|A0A0C4W438_PRUDU	2.1e-34	80.43	Gigantea OS=Prunus dulcis OX=3755 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:2000028	regulation of photoperiodism, flowering

Vocabulary: **INTERPRO**
Term	Definition
IPR026211	GIGANTEA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:2000028	regulation of photoperiodism, flowering
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23313-RA	Carg23313-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026211	GIGANTEA	PRINTS	PR02081	GIGANTEA	coord: 6..30 score: 94.92 coord: 66..86 score: 91.03 coord: 86..93 score: 42.11
IPR026211	GIGANTEA	PANTHER	PTHR36319	FAMILY NOT NAMED	coord: 3..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..52

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23313	Cla016390	Watermelon (97103) v1	carwmB0266
Carg23313	Csa7G293230	Cucumber (Chinese Long) v2	carcuB0303
Carg23313	CSPI07G12480	Wild cucumber (PI 183967)	carcpiB0307
Carg23313	Cucsa.079680	Cucumber (Gy14) v1	carcgyB0324

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23313	Cucumber (Gy14) v2	carcgybB0291
Carg23313	Cucurbita maxima (Rimu)	carcmaB0382
Carg23313	Cucurbita moschata (Rifu)	carcmoB0380
Carg23313	Cucurbita pepo (Zucchini)	carcpeB0388
Carg23313	Cucumber (Chinese Long) v3	carcucB0306
Carg23313	Bottle gourd (USVL1VR-Ls)	carlsiB248
Carg23313	Melon (DHL92) v3.5.1	carmeB0276
Carg23313	Melon (DHL92) v3.6.1	carmedB0288
Carg23313	Watermelon (Charleston Gray)	carwcgB0267
Carg23313	Watermelon (97103) v2	carwmbB0284
Carg23313	Wax gourd	carwgoB0360