Cucsa.079680 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.079680
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Gigantea
Location	scaffold00793 : 2547824 .. 2548099 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AACGACTATTCTGAACAATGGGCCCTTGCATGTGGGGAGATTCTGCGAATCTTGACTCATTACAATCGCCCGATATACAAGATGGAACGAAAAAATGGTGAAACAGAAAGAAGCAGTAGTGGCAGCCGTGCCACGACAAGTGACACCGATGATAGGGAACTTGTTGGAGTGCCTCAGCAACAAGAGAGGAAACCTGTACGACCTTTGTCCCCCTGGATTACTGATATATTGCTTGCTGCACCATTGGGCATCAGAAGTGACTATTTCCGCTGGTAA

mRNA sequence

AACGACTATTCTGAACAATGGGCCCTTGCATGTGGGGAGATTCTGCGAATCTTGACTCATTACAATCGCCCGATATACAAGATGGAACGAAAAAATGGTGAAACAGAAAGAAGCAGTAGTGGCAGCCGTGCCACGACAAGTGACACCGATGATAGGGAACTTGTTGGAGTGCCTCAGCAACAAGAGAGGAAACCTGTACGACCTTTGTCCCCCTGGATTACTGATATATTGCTTGCTGCACCATTGGGCATCAGAAGTGACTATTTCCGCTGGTAA

Coding sequence (CDS)

AACGACTATTCTGAACAATGGGCCCTTGCATGTGGGGAGATTCTGCGAATCTTGACTCATTACAATCGCCCGATATACAAGATGGAACGAAAAAATGGTGAAACAGAAAGAAGCAGTAGTGGCAGCCGTGCCACGACAAGTGACACCGATGATAGGGAACTTGTTGGAGTGCCTCAGCAACAAGAGAGGAAACCTGTACGACCTTTGTCCCCCTGGATTACTGATATATTGCTTGCTGCACCATTGGGCATCAGAAGTGACTATTTCCGCTGGTAA

Protein sequence

NDYSEQWALACGEILRILTHYNRPIYKMERKNGETERSSSGSRATTSDTDDRELVGVPQQQERKPVRPLSPWITDILLAAPLGIRSDYFRW*

Homology

[Close]

BLAST of Cucsa.079680 vs. Swiss-Prot
Match: GIGAN_ARATH (Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=1 SV=2)

HSP 1 Score: 141.7 bits (356), Expect = 3.9e-33
Identity = 65/91 (71.43%), Postives = 72/91 (79.12%), Query Frame = 1


Query: 1   NDYSEQWALACGEILRILTHYNRPIYKMERKNGETERSSSGSRATTSDTDDRELVGVPQQ 60
           NDYSEQWALACGEILRILTHYNRPIYK E++NG+TER+      T+         G P Q
Sbjct: 122 NDYSEQWALACGEILRILTHYNRPIYKTEQQNGDTERNCLSKATTSGSPTSEPKAGSPTQ 181

Query: 61  QERKPVRPLSPWITDILLAAPLGIRSDYFRW 92
            ERKP+RPLSPWI+DILLAAPLGIRSDYFRW
Sbjct: 182 HERKPLRPLSPWISDILLAAPLGIRSDYFRW 212

[Close]

BLAST of Cucsa.079680 vs. Swiss-Prot
Match: GIGAN_ORYSJ (Protein GIGANTEA OS=Oryza sativa subsp. japonica GN=GI PE=2 SV=2)

HSP 1 Score: 129.0 bits (323), Expect = 2.6e-29
Identity = 58/91 (63.74%), Postives = 77/91 (84.62%), Query Frame = 1


Query: 2   DYSEQWALACGEILRILTHYNRPIYKMERKNGETERSSSGSRATTSDTDDRELVGVPQQQ 61
           +YSEQWALACGEILR+LTHYNRPI+K++ ++ E E SS+  +A++ ++ ++   G P+ +
Sbjct: 123 EYSEQWALACGEILRVLTHYNRPIFKVDHQHSEAECSSTSDQASSCESMEKRANGSPRNE 182

Query: 62  -ERKPVRPLSPWITDILLAAPLGIRSDYFRW 92
            +RKP+RPLSPWITDILLAAPLGIRSDYFRW
Sbjct: 183 PDRKPLRPLSPWITDILLAAPLGIRSDYFRW 213

[Close]

BLAST of Cucsa.079680 vs. TrEMBL
Match: A0A0A0K6B6_CUCSA (LATE BLOOMER 1 OS=Cucumis sativus GN=Csa_7G293230 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 4.8e-46
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1


Query: 1   NDYSEQWALACGEILRILTHYNRPIYKMERKNGETERSSSGSRATTSDTDDRELVGVPQQ 60
           NDYSEQWALACGEILRILTHYNRPIYKMERKNGETERSSSGSRATTSDTDDRELVGVPQQ
Sbjct: 11  NDYSEQWALACGEILRILTHYNRPIYKMERKNGETERSSSGSRATTSDTDDRELVGVPQQ 70

Query: 61  QERKPVRPLSPWITDILLAAPLGIRSDYFRW 92
           QERKPVRPLSPWITDILLAAPLGIRSDYFRW
Sbjct: 71  QERKPVRPLSPWITDILLAAPLGIRSDYFRW 101

[Close]

BLAST of Cucsa.079680 vs. TrEMBL
Match: M5VIM2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000556mg PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 7.6e-36
Identity = 76/92 (82.61%), Postives = 83/92 (90.22%), Query Frame = 1


Query: 1   NDYSEQWALACGEILRILTHYNRPIYKMERKNGETERSSSGSRATTSDTDDRELVGVP-Q 60
           N+YSEQWALACGEILRILTHYNRPIYK+E++N ETERSSSGS ATTSD+ D E   +P  
Sbjct: 48  NEYSEQWALACGEILRILTHYNRPIYKVEQQNSETERSSSGSHATTSDSVDGESSHIPLV 107

Query: 61  QQERKPVRPLSPWITDILLAAPLGIRSDYFRW 92
           QQERKP+RPLSPWITDILLAAPLGIRSDYFRW
Sbjct: 108 QQERKPIRPLSPWITDILLAAPLGIRSDYFRW 139

[Close]

BLAST of Cucsa.079680 vs. TrEMBL
Match: A0A0C4W438_PRUDU (Gigantea OS=Prunus dulcis PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.0e-35
Identity = 76/92 (82.61%), Postives = 83/92 (90.22%), Query Frame = 1


Query: 1   NDYSEQWALACGEILRILTHYNRPIYKMERKNGETERSSSGSRATTSDTDDRELVGVP-Q 60
           N+YSEQWALACGEILRILTHYNRPIYK+E++N ETERSSSGS ATTSD+ D E   +P  
Sbjct: 120 NEYSEQWALACGEILRILTHYNRPIYKVEQQNSETERSSSGSHATTSDSVDGESRHIPLV 179

Query: 61  QQERKPVRPLSPWITDILLAAPLGIRSDYFRW 92
           QQERKP+RPLSPWITDILLAAPLGIRSDYFRW
Sbjct: 180 QQERKPIRPLSPWITDILLAAPLGIRSDYFRW 211

[Close]

BLAST of Cucsa.079680 vs. TrEMBL
Match: W9R562_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023788 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.1e-34
Identity = 73/91 (80.22%), Postives = 80/91 (87.91%), Query Frame = 1


Query: 1   NDYSEQWALACGEILRILTHYNRPIYKMERKNGETERSSSGSRATTSDTDDRELVGVPQQ 60
           N+YSEQWALACGEILRILTHYNRPIYK+E+   ETERSSSGS+ATTSD  +     +P Q
Sbjct: 120 NEYSEQWALACGEILRILTHYNRPIYKVEQHCSETERSSSGSQATTSDGGESSSRTLPVQ 179

Query: 61  QERKPVRPLSPWITDILLAAPLGIRSDYFRW 92
           QERKP+RPLSPWITDILLAAPLGIRSDYFRW
Sbjct: 180 QERKPIRPLSPWITDILLAAPLGIRSDYFRW 210

[Close]

BLAST of Cucsa.079680 vs. TrEMBL
Match: A0A0S1LGI4_BETPL (GI OS=Betula platyphylla PE=2 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.5e-34
Identity = 73/91 (80.22%), Postives = 79/91 (86.81%), Query Frame = 1


Query: 2   DYSEQWALACGEILRILTHYNRPIYKMERKNGETERSSSGSRATTSDTDDRELVGVP-QQ 61
           +YSEQWALACGEILR+LTHYNRPIYKME+ N +TERSSSG  ATTSD  DRE   +P  Q
Sbjct: 121 EYSEQWALACGEILRVLTHYNRPIYKMEQPNSDTERSSSGCHATTSDATDRESSHIPLVQ 180

Query: 62  QERKPVRPLSPWITDILLAAPLGIRSDYFRW 92
           QERKP+RPLSPWITDILLAAPL IRSDYFRW
Sbjct: 181 QERKPLRPLSPWITDILLAAPLAIRSDYFRW 211

[Close]

BLAST of Cucsa.079680 vs. TAIR10
Match: AT1G22770.1 (AT1G22770.1 gigantea protein (GI))

HSP 1 Score: 141.7 bits (356), Expect = 2.2e-34
Identity = 65/91 (71.43%), Postives = 72/91 (79.12%), Query Frame = 1


Query: 1   NDYSEQWALACGEILRILTHYNRPIYKMERKNGETERSSSGSRATTSDTDDRELVGVPQQ 60
           NDYSEQWALACGEILRILTHYNRPIYK E++NG+TER+      T+         G P Q
Sbjct: 122 NDYSEQWALACGEILRILTHYNRPIYKTEQQNGDTERNCLSKATTSGSPTSEPKAGSPTQ 181

Query: 61  QERKPVRPLSPWITDILLAAPLGIRSDYFRW 92
            ERKP+RPLSPWI+DILLAAPLGIRSDYFRW
Sbjct: 182 HERKPLRPLSPWISDILLAAPLGIRSDYFRW 212

[Close]

BLAST of Cucsa.079680 vs. NCBI nr
Match: gi|778726488|ref|XP_011659108.1| (PREDICTED: protein GIGANTEA isoform X1 [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 6.9e-46
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1


Query: 1   NDYSEQWALACGEILRILTHYNRPIYKMERKNGETERSSSGSRATTSDTDDRELVGVPQQ 60
           NDYSEQWALACGEILRILTHYNRPIYKMERKNGETERSSSGSRATTSDTDDRELVGVPQQ
Sbjct: 120 NDYSEQWALACGEILRILTHYNRPIYKMERKNGETERSSSGSRATTSDTDDRELVGVPQQ 179

Query: 61  QERKPVRPLSPWITDILLAAPLGIRSDYFRW 92
           QERKPVRPLSPWITDILLAAPLGIRSDYFRW
Sbjct: 180 QERKPVRPLSPWITDILLAAPLGIRSDYFRW 210

[Close]

BLAST of Cucsa.079680 vs. NCBI nr
Match: gi|700189221|gb|KGN44454.1| (LATE BLOOMER 1 [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 6.9e-46
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1


Query: 1   NDYSEQWALACGEILRILTHYNRPIYKMERKNGETERSSSGSRATTSDTDDRELVGVPQQ 60
           NDYSEQWALACGEILRILTHYNRPIYKMERKNGETERSSSGSRATTSDTDDRELVGVPQQ
Sbjct: 11  NDYSEQWALACGEILRILTHYNRPIYKMERKNGETERSSSGSRATTSDTDDRELVGVPQQ 70

Query: 61  QERKPVRPLSPWITDILLAAPLGIRSDYFRW 92
           QERKPVRPLSPWITDILLAAPLGIRSDYFRW
Sbjct: 71  QERKPVRPLSPWITDILLAAPLGIRSDYFRW 101

[Close]

BLAST of Cucsa.079680 vs. NCBI nr
Match: gi|659123936|ref|XP_008461912.1| (PREDICTED: protein GIGANTEA-like isoform X1 [Cucumis melo])

HSP 1 Score: 183.7 bits (465), Expect = 1.4e-43
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 1


Query: 1   NDYSEQWALACGEILRILTHYNRPIYKMERKNGETERSSSGSRATTSDTDDRELVGVPQQ 60
           NDYSEQWALACGEILRILTHYNRPIYKME+KNGETERSSS S ATTSDTDDRELVGVPQQ
Sbjct: 120 NDYSEQWALACGEILRILTHYNRPIYKMEQKNGETERSSSCSLATTSDTDDRELVGVPQQ 179

Query: 61  QERKPVRPLSPWITDILLAAPLGIRSDYFRW 92
           QERKPVRPLSPWITDILLAAPLGIRSDYFRW
Sbjct: 180 QERKPVRPLSPWITDILLAAPLGIRSDYFRW 210

[Close]

BLAST of Cucsa.079680 vs. NCBI nr
Match: gi|645263979|ref|XP_008237480.1| (PREDICTED: protein GIGANTEA [Prunus mume])

HSP 1 Score: 157.5 bits (397), Expect = 1.1e-35
Identity = 76/92 (82.61%), Postives = 83/92 (90.22%), Query Frame = 1


Query: 1   NDYSEQWALACGEILRILTHYNRPIYKMERKNGETERSSSGSRATTSDTDDRELVGVP-Q 60
           N+YSEQWALACGEILRILTHYNRPIYK+E++N ETERSSSGS ATTSD+ D E   +P  
Sbjct: 120 NEYSEQWALACGEILRILTHYNRPIYKVEQQNSETERSSSGSHATTSDSVDGESSHIPLV 179

Query: 61  QQERKPVRPLSPWITDILLAAPLGIRSDYFRW 92
           QQERKP+RPLSPWITDILLAAPLGIRSDYFRW
Sbjct: 180 QQERKPIRPLSPWITDILLAAPLGIRSDYFRW 211

[Close]

BLAST of Cucsa.079680 vs. NCBI nr
Match: gi|595791879|ref|XP_007199688.1| (hypothetical protein PRUPE_ppa000556mg [Prunus persica])

HSP 1 Score: 157.5 bits (397), Expect = 1.1e-35
Identity = 76/92 (82.61%), Postives = 83/92 (90.22%), Query Frame = 1


Query: 1   NDYSEQWALACGEILRILTHYNRPIYKMERKNGETERSSSGSRATTSDTDDRELVGVP-Q 60
           N+YSEQWALACGEILRILTHYNRPIYK+E++N ETERSSSGS ATTSD+ D E   +P  
Sbjct: 48  NEYSEQWALACGEILRILTHYNRPIYKVEQQNSETERSSSGSHATTSDSVDGESSHIPLV 107

Query: 61  QQERKPVRPLSPWITDILLAAPLGIRSDYFRW 92
           QQERKP+RPLSPWITDILLAAPLGIRSDYFRW
Sbjct: 108 QQERKPIRPLSPWITDILLAAPLGIRSDYFRW 139

The following BLAST results are available for this feature:

BLAST of Cucsa.079680 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GIGAN_ARATH	3.9e-33	71.43	Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=1 SV=2	[more]
GIGAN_ORYSJ	2.6e-29	63.74	Protein GIGANTEA OS=Oryza sativa subsp. japonica GN=GI PE=2 SV=2	[more]

BLAST of Cucsa.079680 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6B6_CUCSA	4.8e-46	100.00	LATE BLOOMER 1 OS=Cucumis sativus GN=Csa_7G293230 PE=4 SV=1	[more]
M5VIM2_PRUPE	7.6e-36	82.61	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000556mg PE=4 SV=1	[more]
A0A0C4W438_PRUDU	1.0e-35	82.61	Gigantea OS=Prunus dulcis PE=4 SV=1	[more]
W9R562_9ROSA	1.1e-34	80.22	Uncharacterized protein OS=Morus notabilis GN=L484_023788 PE=4 SV=1	[more]
A0A0S1LGI4_BETPL	2.5e-34	80.22	GI OS=Betula platyphylla PE=2 SV=1	[more]

BLAST of Cucsa.079680 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G22770.1	2.2e-34	71.43	gigantea protein (GI)	[more]

BLAST of Cucsa.079680 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778726488\|ref\|XP_011659108.1\|	6.9e-46	100.00	PREDICTED: protein GIGANTEA isoform X1 [Cucumis sativus]	[more]
gi\|700189221\|gb\|KGN44454.1\|	6.9e-46	100.00	LATE BLOOMER 1 [Cucumis sativus]	[more]
gi\|659123936\|ref\|XP_008461912.1\|	1.4e-43	96.70	PREDICTED: protein GIGANTEA-like isoform X1 [Cucumis melo]	[more]
gi\|645263979\|ref\|XP_008237480.1\|	1.1e-35	82.61	PREDICTED: protein GIGANTEA [Prunus mume]	[more]
gi\|595791879\|ref\|XP_007199688.1\|	1.1e-35	82.61	hypothetical protein PRUPE_ppa000556mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR026211	GIGANTEA

Vocabulary: **Biological Process**
Term	Definition
GO:2000028	regulation of photoperiodism, flowering

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048578	positive regulation of long-day photoperiodism, flowering
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009637	response to blue light
biological_process	GO:0009409	response to cold
biological_process	GO:0010218	response to far red light
biological_process	GO:0042542	response to hydrogen peroxide
biological_process	GO:0010378	temperature compensation of the circadian clock
biological_process	GO:2000028	regulation of photoperiodism, flowering
cellular_component	GO:0005654	nucleoplasm
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.079680.1	Cucsa.079680.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026211	GIGANTEA	PRINTS	PR02081	GIGANTEA	coord: 63..83 score: 1.6E-31coord: 3..27 score: 1.6E-31coord: 83..91 score: 1.6
IPR026211	GIGANTEA	PANTHER	PTHR36319:SF1	PROTEIN GIGANTEA	coord: 1..91 score: 9.0
None	No IPR available	PANTHER	PTHR36319	FAMILY NOT NAMED	coord: 1..91 score: 9.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.079680	Cla016390	Watermelon (97103) v1	cgywmB083
Cucsa.079680	Csa7G293230	Cucumber (Chinese Long) v2	cgycuB076
Cucsa.079680	CSPI07G12480	Wild cucumber (PI 183967)	cgycpiB079
Cucsa.079680	Carg23313	Silver-seed gourd	carcgyB0324

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.079680	Cucurbita pepo (Zucchini)	cgycpeB0137
Cucsa.079680	Cucurbita pepo (Zucchini)	cgycpeB0139
Cucsa.079680	Bottle gourd (USVL1VR-Ls)	cgylsiB081
Cucsa.079680	Melon (DHL92) v3.6.1	cgymedB083
Cucsa.079680	Cucumber (Chinese Long) v3	cgycucB080
Cucsa.079680	Watermelon (97103) v2	cgywmbB078
Cucsa.079680	Wax gourd	cgywgoB092
Cucsa.079680	Cucurbita maxima (Rimu)	cgycmaB0133
Cucsa.079680	Cucurbita maxima (Rimu)	cgycmaB0139
Cucsa.079680	Cucurbita maxima (Rimu)	cgycmaB0142
Cucsa.079680	Cucurbita moschata (Rifu)	cgycmoB0130
Cucsa.079680	Cucurbita moschata (Rifu)	cgycmoB0135
Cucsa.079680	Cucurbita moschata (Rifu)	cgycmoB0137
Cucsa.079680	Melon (DHL92) v3.5.1	cgymeB083
Cucsa.079680	Melon (DHL92) v3.5.1	cgymeB085
Cucsa.079680	Watermelon (Charleston Gray)	cgywcgB081