CSPI07G12480 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G12480
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Gigantea
Location	Chr7 : 10769646 .. 10769923 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAACGACTATTCTGAACAATGGGCCCTTGCATGTGGGGAGATTCTGCGAATCTTGACTCATTACAATCGCCCGATATACAAGATGGAACGAAAAAATGGTGAAACAGAAAGAAGCAGTAGTGGCAGCCTTGCCACGACAAGTGACACCGATGATAGGGAACTTGTTGGAATGCCTCAGCAACAAGAGAGGAAACCTGTACGACCTTTGTCCCCCTGGATTACTGATATATTGCTTGCTGCACCATTGGGCATCAGAAGTGACTATTTCCGCTGGTAA

mRNA sequence

ATGGAACGAAAAAATGGTGAAACAGAAAGAAGCAGTAGTGGCAGCCTTGCCACGACAAGTGACACCGATGATAGGGAACTTGTTGGAATGCCTCAGCAACAAGAGAGGAAACCTGTACGACCTTTGTCCCCCTGGATTACTGATATATTGCTTGCTGCACCATTGGGCATCAGAAGTGACTATTTCCGCTGGTAA

Coding sequence (CDS)

ATGGAACGAAAAAATGGTGAAACAGAAAGAAGCAGTAGTGGCAGCCTTGCCACGACAAGTGACACCGATGATAGGGAACTTGTTGGAATGCCTCAGCAACAAGAGAGGAAACCTGTACGACCTTTGTCCCCCTGGATTACTGATATATTGCTTGCTGCACCATTGGGCATCAGAAGTGACTATTTCCGCTGGTAA

Homology

[Close]

BLAST of CSPI07G12480 vs. Swiss-Prot
Match: GIGAN_ARATH (Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=1 SV=2)

HSP 1 Score: 83.6 bits (205), Expect = 8.9e-16
Identity = 38/63 (60.32%), Postives = 45/63 (71.43%), Query Frame = 1


Query: 2   ERKNGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLAAPLGIRSDY 61
           E++NG+TER+      T+         G P Q ERKP+RPLSPWI+DILLAAPLGIRSDY
Sbjct: 150 EQQNGDTERNCLSKATTSGSPTSEPKAGSPTQHERKPLRPLSPWISDILLAAPLGIRSDY 209

Query: 62  FRW 65
           FRW
Sbjct: 210 FRW 212

[Close]

BLAST of CSPI07G12480 vs. Swiss-Prot
Match: GIGAN_ORYSJ (Protein GIGANTEA OS=Oryza sativa subsp. japonica GN=GI PE=2 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 3.2e-13
Identity = 35/65 (53.85%), Postives = 50/65 (76.92%), Query Frame = 1


Query: 1   MERKNGETERSSSGSLATTSDTDDRELVGMPQQQ-ERKPVRPLSPWITDILLAAPLGIRS 60
           ++ ++ E E SS+   A++ ++ ++   G P+ + +RKP+RPLSPWITDILLAAPLGIRS
Sbjct: 149 VDHQHSEAECSSTSDQASSCESMEKRANGSPRNEPDRKPLRPLSPWITDILLAAPLGIRS 208

Query: 61  DYFRW 65
           DYFRW
Sbjct: 209 DYFRW 213

[Close]

BLAST of CSPI07G12480 vs. TrEMBL
Match: A0A0A0K6B6_CUCSA (LATE BLOOMER 1 OS=Cucumis sativus GN=Csa_7G293230 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 2.7e-27
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 1


Query: 1   MERKNGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLAAPLGIRSD 60
           MERKNGETERSSSGS ATTSDTDDRELVG+PQQQERKPVRPLSPWITDILLAAPLGIRSD
Sbjct: 38  MERKNGETERSSSGSRATTSDTDDRELVGVPQQQERKPVRPLSPWITDILLAAPLGIRSD 97

Query: 61  YFRW 65
           YFRW
Sbjct: 98  YFRW 101

[Close]

BLAST of CSPI07G12480 vs. TrEMBL
Match: M5VIM2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000556mg PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 3.9e-18
Identity = 50/65 (76.92%), Postives = 56/65 (86.15%), Query Frame = 1


Query: 1   MERKNGETERSSSGSLATTSDTDDRELVGMPQ-QQERKPVRPLSPWITDILLAAPLGIRS 60
           +E++N ETERSSSGS ATTSD+ D E   +P  QQERKP+RPLSPWITDILLAAPLGIRS
Sbjct: 75  VEQQNSETERSSSGSHATTSDSVDGESSHIPLVQQERKPIRPLSPWITDILLAAPLGIRS 134

Query: 61  DYFRW 65
           DYFRW
Sbjct: 135 DYFRW 139

[Close]

BLAST of CSPI07G12480 vs. TrEMBL
Match: A0A0C4W438_PRUDU (Gigantea OS=Prunus dulcis PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 5.1e-18
Identity = 50/65 (76.92%), Postives = 56/65 (86.15%), Query Frame = 1


Query: 1   MERKNGETERSSSGSLATTSDTDDRELVGMPQ-QQERKPVRPLSPWITDILLAAPLGIRS 60
           +E++N ETERSSSGS ATTSD+ D E   +P  QQERKP+RPLSPWITDILLAAPLGIRS
Sbjct: 147 VEQQNSETERSSSGSHATTSDSVDGESRHIPLVQQERKPIRPLSPWITDILLAAPLGIRS 206

Query: 61  DYFRW 65
           DYFRW
Sbjct: 207 DYFRW 211

[Close]

BLAST of CSPI07G12480 vs. TrEMBL
Match: V4V6T3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004044mg PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 8.7e-18
Identity = 50/64 (78.12%), Postives = 54/64 (84.38%), Query Frame = 1


Query: 2   ERKNGETERSSSGSLATTSDTDDRELVGMPQ-QQERKPVRPLSPWITDILLAAPLGIRSD 61
           E++N E ERSSS S ATTSD+ D EL  MP  QQERKP+RPLSPWITDILLAAPLGIRSD
Sbjct: 76  EQQNSEFERSSSSSHATTSDSRDGELSNMPLVQQERKPLRPLSPWITDILLAAPLGIRSD 135

Query: 62  YFRW 65
           YFRW
Sbjct: 136 YFRW 139

[Close]

BLAST of CSPI07G12480 vs. TrEMBL
Match: A0A067H897_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001216mg PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 8.7e-18
Identity = 50/64 (78.12%), Postives = 54/64 (84.38%), Query Frame = 1


Query: 2   ERKNGETERSSSGSLATTSDTDDRELVGMPQ-QQERKPVRPLSPWITDILLAAPLGIRSD 61
           E++N E ERSSS S ATTSD+ D EL  MP  QQERKP+RPLSPWITDILLAAPLGIRSD
Sbjct: 105 EQQNSEFERSSSSSHATTSDSRDGELSNMPLVQQERKPLRPLSPWITDILLAAPLGIRSD 164

Query: 62  YFRW 65
           YFRW
Sbjct: 165 YFRW 168

[Close]

BLAST of CSPI07G12480 vs. TAIR10
Match: AT1G22770.1 (AT1G22770.1 gigantea protein (GI))

HSP 1 Score: 83.6 bits (205), Expect = 5.0e-17
Identity = 38/63 (60.32%), Postives = 45/63 (71.43%), Query Frame = 1


Query: 2   ERKNGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLAAPLGIRSDY 61
           E++NG+TER+      T+         G P Q ERKP+RPLSPWI+DILLAAPLGIRSDY
Sbjct: 150 EQQNGDTERNCLSKATTSGSPTSEPKAGSPTQHERKPLRPLSPWISDILLAAPLGIRSDY 209

Query: 62  FRW 65
           FRW
Sbjct: 210 FRW 212

[Close]

BLAST of CSPI07G12480 vs. NCBI nr
Match: gi|778726488|ref|XP_011659108.1| (PREDICTED: protein GIGANTEA isoform X1 [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 3.9e-27
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 1


Query: 1   MERKNGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLAAPLGIRSD 60
           MERKNGETERSSSGS ATTSDTDDRELVG+PQQQERKPVRPLSPWITDILLAAPLGIRSD
Sbjct: 147 MERKNGETERSSSGSRATTSDTDDRELVGVPQQQERKPVRPLSPWITDILLAAPLGIRSD 206

Query: 61  YFRW 65
           YFRW
Sbjct: 207 YFRW 210

[Close]

BLAST of CSPI07G12480 vs. NCBI nr
Match: gi|700189221|gb|KGN44454.1| (LATE BLOOMER 1 [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 3.9e-27
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 1


Query: 1   MERKNGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLAAPLGIRSD 60
           MERKNGETERSSSGS ATTSDTDDRELVG+PQQQERKPVRPLSPWITDILLAAPLGIRSD
Sbjct: 38  MERKNGETERSSSGSRATTSDTDDRELVGVPQQQERKPVRPLSPWITDILLAAPLGIRSD 97

Query: 61  YFRW 65
           YFRW
Sbjct: 98  YFRW 101

[Close]

BLAST of CSPI07G12480 vs. NCBI nr
Match: gi|659123936|ref|XP_008461912.1| (PREDICTED: protein GIGANTEA-like isoform X1 [Cucumis melo])

HSP 1 Score: 125.9 bits (315), Expect = 2.5e-26
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 1


Query: 1   MERKNGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLAAPLGIRSD 60
           ME+KNGETERSSS SLATTSDTDDRELVG+PQQQERKPVRPLSPWITDILLAAPLGIRSD
Sbjct: 147 MEQKNGETERSSSCSLATTSDTDDRELVGVPQQQERKPVRPLSPWITDILLAAPLGIRSD 206

Query: 61  YFRW 65
           YFRW
Sbjct: 207 YFRW 210

[Close]

BLAST of CSPI07G12480 vs. NCBI nr
Match: gi|470108349|ref|XP_004290483.1| (PREDICTED: protein GIGANTEA [Fragaria vesca subsp. vesca])

HSP 1 Score: 99.0 bits (245), Expect = 3.3e-18
Identity = 50/65 (76.92%), Postives = 56/65 (86.15%), Query Frame = 1


Query: 1   MERKNGETERSSSGSLATTSDTDDRELVGMPQ-QQERKPVRPLSPWITDILLAAPLGIRS 60
           +E++N ETERSSSGS ATTSD+ D E   +P  QQERKP+RPLSPWITDILLAAPLGIRS
Sbjct: 147 VEQQNSETERSSSGSHATTSDSVDGESSHVPSVQQERKPIRPLSPWITDILLAAPLGIRS 206

Query: 61  DYFRW 65
           DYFRW
Sbjct: 207 DYFRW 211

[Close]

BLAST of CSPI07G12480 vs. NCBI nr
Match: gi|645263979|ref|XP_008237480.1| (PREDICTED: protein GIGANTEA [Prunus mume])

HSP 1 Score: 98.2 bits (243), Expect = 5.6e-18
Identity = 50/65 (76.92%), Postives = 56/65 (86.15%), Query Frame = 1


Query: 1   MERKNGETERSSSGSLATTSDTDDRELVGMPQ-QQERKPVRPLSPWITDILLAAPLGIRS 60
           +E++N ETERSSSGS ATTSD+ D E   +P  QQERKP+RPLSPWITDILLAAPLGIRS
Sbjct: 147 VEQQNSETERSSSGSHATTSDSVDGESSHIPLVQQERKPIRPLSPWITDILLAAPLGIRS 206

Query: 61  DYFRW 65
           DYFRW
Sbjct: 207 DYFRW 211

The following BLAST results are available for this feature:

BLAST of CSPI07G12480 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GIGAN_ARATH	8.9e-16	60.32	Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=1 SV=2	[more]
GIGAN_ORYSJ	3.2e-13	53.85	Protein GIGANTEA OS=Oryza sativa subsp. japonica GN=GI PE=2 SV=2	[more]

BLAST of CSPI07G12480 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6B6_CUCSA	2.7e-27	96.88	LATE BLOOMER 1 OS=Cucumis sativus GN=Csa_7G293230 PE=4 SV=1	[more]
M5VIM2_PRUPE	3.9e-18	76.92	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000556mg PE=4 SV=1	[more]
A0A0C4W438_PRUDU	5.1e-18	76.92	Gigantea OS=Prunus dulcis PE=4 SV=1	[more]
V4V6T3_9ROSI	8.7e-18	78.13	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004044mg PE=4 SV=1	[more]
A0A067H897_CITSI	8.7e-18	78.13	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001216mg PE=4 SV=1	[more]

BLAST of CSPI07G12480 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G22770.1	5.0e-17	60.32	gigantea protein (GI)	[more]

BLAST of CSPI07G12480 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778726488\|ref\|XP_011659108.1\|	3.9e-27	96.88	PREDICTED: protein GIGANTEA isoform X1 [Cucumis sativus]	[more]
gi\|700189221\|gb\|KGN44454.1\|	3.9e-27	96.88	LATE BLOOMER 1 [Cucumis sativus]	[more]
gi\|659123936\|ref\|XP_008461912.1\|	2.5e-26	95.31	PREDICTED: protein GIGANTEA-like isoform X1 [Cucumis melo]	[more]
gi\|470108349\|ref\|XP_004290483.1\|	3.3e-18	76.92	PREDICTED: protein GIGANTEA [Fragaria vesca subsp. vesca]	[more]
gi\|645263979\|ref\|XP_008237480.1\|	5.6e-18	76.92	PREDICTED: protein GIGANTEA [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR026211	GIGANTEA

Vocabulary: **Biological Process**
Term	Definition
GO:2000028	regulation of photoperiodism, flowering

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048578	positive regulation of long-day photoperiodism, flowering
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009637	response to blue light
biological_process	GO:0009409	response to cold
biological_process	GO:0010218	response to far red light
biological_process	GO:0042542	response to hydrogen peroxide
biological_process	GO:0010378	temperature compensation of the circadian clock
biological_process	GO:2000028	regulation of photoperiodism, flowering
biological_process	GO:0005982	starch metabolic process
cellular_component	GO:0005654	nucleoplasm
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G12480.1	CSPI07G12480.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026211	GIGANTEA	PRINTS	PR02081	GIGANTEA	coord: 56..64 score: 1.8E-15coord: 36..56 score: 1.8
IPR026211	GIGANTEA	PANTHER	PTHR36319:SF1	PROTEIN GIGANTEA	coord: 1..64 score: 5.3
None	No IPR available	PANTHER	PTHR36319	FAMILY NOT NAMED	coord: 1..64 score: 5.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI07G12480	Cla016390	Watermelon (97103) v1	cpiwmB586
CSPI07G12480	Csa7G293230	Cucumber (Chinese Long) v2	cpicuB354
CSPI07G12480	ClCG09G010210	Watermelon (Charleston Gray)	cpiwcgB554
CSPI07G12480	Lsi02G019650	Bottle gourd (USVL1VR-Ls)	cpilsiB517
CSPI07G12480	MELO3C024067.2	Melon (DHL92) v3.6.1	cpimedB514
CSPI07G12480	CsaV3_7G024490	Cucumber (Chinese Long) v3	cpicucB414
CSPI07G12480	Cla97C09G172950	Watermelon (97103) v2	cpiwmbB597
CSPI07G12480	Bhi09G001294	Wax gourd	cpiwgoB718
CSPI07G12480	Cucsa.079680	Cucumber (Gy14) v1	cgycpiB079
CSPI07G12480	CmaCh09G011230	Cucurbita maxima (Rimu)	cmacpiB045
CSPI07G12480	Cp4.1LG06g07430	Cucurbita pepo (Zucchini)	cpecpiB801
CSPI07G12480	CsGy7G011620	Cucumber (Gy14) v2	cgybcpiB331
CSPI07G12480	Carg23313	Silver-seed gourd	carcpiB0307

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI07G12480	Silver-seed gourd	carcpiB0684
CSPI07G12480	Cucurbita maxima (Rimu)	cmacpiB493
CSPI07G12480	Cucurbita moschata (Rifu)	cmocpiB035
CSPI07G12480	Cucurbita moschata (Rifu)	cmocpiB484
CSPI07G12480	Melon (DHL92) v3.5.1	cpimeB528
CSPI07G12480	Cucurbita pepo (Zucchini)	cpecpiB593