Carg16580 (gene) Silver-seed gourd

Overview
NameCarg16580
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_089 : 422126 .. 423206 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGGAATTTGGCTTCCCTGCCTAGACTTGGTGGGTACTGTCCACTGTAATAACGTACCAGGAAATTGTTGGGGTCTTGGATTTGGAGTGGGGTTGTAATCCTTCTCATAAGAAAACAATTTGTAAAGAGTGCCTTCATCGCCTTCTCTTTGCTAGCCTTAAATGCAAATTTAGTCGTATCGTCGAGGTTTTGATTACTTCACCTTTCGAGTTTCCTGTCTATTTGGTTATTGGTCAAAAACGTATTGCGTATACGACAATACCCTGAAACCTCACCTCTGCTAAATAGAGCTCAAGTATTTTTCTCTTTTGTTTCTTTTCCATCCATTCAATAATATTTCCTTTCTGTGTATCTGTTTCAAAATCAAACGAATATTTAATCCAATCCCTCACCTTAGACAAATCCCATTTGCTATCCAAGCAAAACAAAGTTCTTCCCTTTGACTTTCATCTTCTGCCTGCTTTGCTGGAAATTTCCTCGCATGAACTCCACCATGAAAGTCGCTGTCTTTCGGCTCATTCTTATAATGCTACACACATCATGCCTGATACATACACACATACATATCTCTTGAAGTCCTCAAGAATGTTCCTGTTCAAATCAAAGTTGCCTCTATTAGTGGTTAGGAGAGGACCCATTCAATTCTGTCGAGGCTTTGGTCAAATCCTTGCAGCTTGTACAATAATCCAAAACTTGACACTCTTCATTTTACTATAAATATCGTTGCAATCCCATCAACAAACTCAACCTCTTCTTTCATTTAATCTCTCGAAAGGGAAACAGAAACAGAATATGAAAATTCTTCACATATCTCTTACTCTGGCAATGGTTTTCCTTCTTTTTCTCTTGCAGCTTCACCCAAACATAGCTGGTAGAACTCTGCATGAGAACCCATCAATGGTGAGAAGAACGGAGCTGAAGCTGAAGCTGAAGCTGCAGTCTCTTCAAAGGGTCAGTGTACCGCCCTCCGGCCCCTCTGGTTGCACCTTCATTCCCGGCACCAACGGCCCCGGCTGTCCCCAGAAAGTGAGGCACTACACCATCAACCATTCGACTCGACGTCCAAGCGCTCACTGA

mRNA sequence

ATGGATGGAATTTGGCTTCCCTGCCTAGACTTGCTTCACCCAAACATAGCTGGTAGAACTCTGCATGAGAACCCATCAATGGTGAGAAGAACGGAGCTGAAGCTGAAGCTGAAGCTGCAGTCTCTTCAAAGGGTCAGTGTACCGCCCTCCGGCCCCTCTGGTTGCACCTTCATTCCCGGCACCAACGGCCCCGGCTGTCCCCAGAAAGTGAGGCACTACACCATCAACCATTCGACTCGACGTCCAAGCGCTCACTGA

Coding sequence (CDS)

ATGGATGGAATTTGGCTTCCCTGCCTAGACTTGCTTCACCCAAACATAGCTGGTAGAACTCTGCATGAGAACCCATCAATGGTGAGAAGAACGGAGCTGAAGCTGAAGCTGAAGCTGCAGTCTCTTCAAAGGGTCAGTGTACCGCCCTCCGGCCCCTCTGGTTGCACCTTCATTCCCGGCACCAACGGCCCCGGCTGTCCCCAGAAAGTGAGGCACTACACCATCAACCATTCGACTCGACGTCCAAGCGCTCACTGA

Protein sequence

MDGIWLPCLDLLHPNIAGRTLHENPSMVRRTELKLKLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPQKVRHYTINHSTRRPSAH
Homology
[Close]
BLAST of Carg16580 vs. NCBI nr
Match: KGN56901.1 (hypothetical protein Csa_3G142940 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 6.4e-26
Identity = 60/74 (81.08%), Postives = 62/74 (83.78%), Query Frame = 0 

Query: 12 LHPNIAGRTLHENPSMVRRTELKLKLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPQKVR 71
          L PN+AGRTLHE P MVRR E  L LKLQSLQRVSVPPSGPSGCTFIPGTNGPGCP K R
Sbjct: 10 LQPNLAGRTLHEKPPMVRRME--LNLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPLKER 69

Query: 72 HYTINHSTRRPSAH 86
          HY  NHST+RPS H
Sbjct: 70 HYVANHSTQRPSTH 81

[Close]
BLAST of Carg16580 vs. NCBI nr
Match: EXB55548.1 (hypothetical protein L484_017421 [Morus notabilis])

HSP 1 Score: 65.9 bits (159), Expect = 7.8e-08
Identity = 33/66 (50.00%), Postives = 43/66 (65.15%), Query Frame = 0 

Query: 17 AGRTLHENPSMVRRTELKLKLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPQKVRHYTIN 76
          A R L+++   + + E KL L  QSL R  VPPSGPSGCT+IPG+ GP CP   +HY  +
Sbjct: 24 ASRVLNDHKEGLVKEE-KLGLGFQSLPRGPVPPSGPSGCTYIPGSGGPNCPLGEKHYAGD 83

Query: 77 HSTRRP 83
          H+T  P
Sbjct: 84 HATVYP 88

[Close]
BLAST of Carg16580 vs. NCBI nr
Match: PRQ36393.1 (hypothetical protein RchiOBHm_Chr4g0391021 [Rosa chinensis])

HSP 1 Score: 65.5 bits (158), Expect = 1.0e-07
Identity = 37/80 (46.25%), Postives = 47/80 (58.75%), Query Frame = 0 

Query: 6  LPCLDLLHPNIAGRTLHENPSMVRRTELKLKLKLQSLQRVSVPPSGPSGCTFIPGTNGPG 65
          L C+  + PN A R L+ N  M+ + EL   + LQSL R   PP+G S CT+IPGT G G
Sbjct: 13 LLCILHVQPNRASRVLY-NDGMLMKREL---ISLQSLPRGETPPTGSSQCTYIPGTGGSG 72

Query: 66 CPQKVRHYTINHSTRRPSAH 86
          CP KV++Y   H   RP  H
Sbjct: 73 CPLKVKNYAGGHG--RPHHH 86

[Close]
BLAST of Carg16580 vs. NCBI nr
Match: POE98886.1 (hypothetical protein CFP56_44648 [Quercus suber])

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-07
Identity = 32/59 (54.24%), Postives = 35/59 (59.32%), Query Frame = 0 

Query: 18 GRTLHENPSMVRRTELKLKLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPQKVRHYTIN 77
          G  LH+ P            +LQSLQR  V PSGPSGCT+IPGTNGPGCP    HY  N
Sbjct: 35 GELLHKEP------------RLQSLQRGPVAPSGPSGCTYIPGTNGPGCPVNEMHYARN 81

[Close]
BLAST of Carg16580 vs. NCBI nr
Match: XP_024931769.1 (uncharacterized protein LOC112492397 [Ziziphus jujuba])

HSP 1 Score: 63.5 bits (153), Expect = 3.9e-07
Identity = 32/72 (44.44%), Postives = 44/72 (61.11%), Query Frame = 0 

Query: 14 PNIAGRTLHENPSMVRRTELKLKLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPQKVRH- 73
          P+ A R LH+   + ++     KL LQSLQR  +PPSG SGCT+IPGT G  CP   +H 
Sbjct: 21 PSRASRMLHDEEEIAKK-----KLGLQSLQRGDLPPSGASGCTYIPGTGGSSCPLNGKHH 80

Query: 74 --YTINHSTRRP 83
            + ++H+T  P
Sbjct: 81 AGHVLSHATAYP 87

[Close]
BLAST of Carg16580 vs. TrEMBL
Match: tr|A0A0A0LA00|A0A0A0LA00_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G142940 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.2e-26
Identity = 60/74 (81.08%), Postives = 62/74 (83.78%), Query Frame = 0 

Query: 12 LHPNIAGRTLHENPSMVRRTELKLKLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPQKVR 71
          L PN+AGRTLHE P MVRR E  L LKLQSLQRVSVPPSGPSGCTFIPGTNGPGCP K R
Sbjct: 10 LQPNLAGRTLHEKPPMVRRME--LNLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPLKER 69

Query: 72 HYTINHSTRRPSAH 86
          HY  NHST+RPS H
Sbjct: 70 HYVANHSTQRPSTH 81

[Close]
BLAST of Carg16580 vs. TrEMBL
Match: tr|W9QW23|W9QW23_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_017421 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.2e-08
Identity = 33/66 (50.00%), Postives = 43/66 (65.15%), Query Frame = 0 

Query: 17 AGRTLHENPSMVRRTELKLKLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPQKVRHYTIN 76
          A R L+++   + + E KL L  QSL R  VPPSGPSGCT+IPG+ GP CP   +HY  +
Sbjct: 24 ASRVLNDHKEGLVKEE-KLGLGFQSLPRGPVPPSGPSGCTYIPGSGGPNCPLGEKHYAGD 83

Query: 77 HSTRRP 83
          H+T  P
Sbjct: 84 HATVYP 88

[Close]
BLAST of Carg16580 vs. TrEMBL
Match: tr|A0A2P6QQE6|A0A2P6QQE6_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0391021 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.7e-08
Identity = 37/80 (46.25%), Postives = 47/80 (58.75%), Query Frame = 0 

Query: 6  LPCLDLLHPNIAGRTLHENPSMVRRTELKLKLKLQSLQRVSVPPSGPSGCTFIPGTNGPG 65
          L C+  + PN A R L+ N  M+ + EL   + LQSL R   PP+G S CT+IPGT G G
Sbjct: 13 LLCILHVQPNRASRVLY-NDGMLMKREL---ISLQSLPRGETPPTGSSQCTYIPGTGGSG 72

Query: 66 CPQKVRHYTINHSTRRPSAH 86
          CP KV++Y   H   RP  H
Sbjct: 73 CPLKVKNYAGGHG--RPHHH 86

[Close]
BLAST of Carg16580 vs. TrEMBL
Match: tr|A0A2P4L126|A0A2P4L126_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_44648 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.8e-08
Identity = 32/59 (54.24%), Postives = 35/59 (59.32%), Query Frame = 0 

Query: 18 GRTLHENPSMVRRTELKLKLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPQKVRHYTIN 77
          G  LH+ P            +LQSLQR  V PSGPSGCT+IPGTNGPGCP    HY  N
Sbjct: 35 GELLHKEP------------RLQSLQRGPVAPSGPSGCTYIPGTNGPGCPVNEMHYARN 81

[Close]
BLAST of Carg16580 vs. TrEMBL
Match: tr|A0A072VM35|A0A072VM35_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=25484394 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.3e-07
Identity = 34/70 (48.57%), Postives = 41/70 (58.57%), Query Frame = 0 

Query: 12 LHPNIAGRTLHENPSMVRRTELKLKLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPQKVR 71
          + PNIA R L+        T+ K +L LQSL +  VPPSGPSGCTFIPG+ G  CP K  
Sbjct: 19 VEPNIASRVLN--------TKNKFQLSLQSLDKGPVPPSGPSGCTFIPGSGGTNCPLKEM 78

Query: 72 HYTINHSTRR 82
          +   N   RR
Sbjct: 79 NVAGNIHQRR 80

The following BLAST results are available for this feature:
BLAST of Carg16580 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN56901.16.4e-2681.08hypothetical protein Csa_3G142940 [Cucumis sativus][more]
EXB55548.17.8e-0850.00hypothetical protein L484_017421 [Morus notabilis][more]
PRQ36393.11.0e-0746.25hypothetical protein RchiOBHm_Chr4g0391021 [Rosa chinensis][more]
POE98886.11.3e-0754.24hypothetical protein CFP56_44648 [Quercus suber][more]
XP_024931769.13.9e-0744.44uncharacterized protein LOC112492397 [Ziziphus jujuba][more]
BLAST of Carg16580 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg16580 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg16580 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LA00|A0A0A0LA00_CUCSA4.2e-2681.08Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G142940 PE=4 SV=1[more]
tr|W9QW23|W9QW23_9ROSA5.2e-0850.00Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_017421 PE=4 SV=1[more]
tr|A0A2P6QQE6|A0A2P6QQE6_ROSCH6.7e-0846.25Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0391021 PE=4... [more]
tr|A0A2P4L126|A0A2P4L126_QUESU8.8e-0854.24Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_44648 PE=4 SV=1[more]
tr|A0A072VM35|A0A072VM35_MEDTR3.3e-0748.57Uncharacterized protein OS=Medicago truncatula OX=3880 GN=25484394 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16580-RACarg16580-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33592FAMILY NOT NAMEDcoord: 13..77
NoneNo IPR availablePANTHERPTHR33592:SF1SUBFAMILY NOT NAMEDcoord: 13..77

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg16580Cla021557Watermelon (97103) v1carwmB0223
Carg16580Csa3G142940Cucumber (Chinese Long) v2carcuB0262
Carg16580MELO3C006461Melon (DHL92) v3.5.1carmeB0240
Carg16580CSPI03G12380Wild cucumber (PI 183967)carcpiB0266
Carg16580CmaCh00G005540Cucurbita maxima (Rimu)carcmaB0324
Carg16580CmaCh14G017860Cucurbita maxima (Rimu)carcmaB0325
Carg16580CmaCh00G004960Cucurbita maxima (Rimu)carcmaB0323
Carg16580CmoCh14G018230Cucurbita moschata (Rifu)carcmoB0328
Carg16580Lsi05G016880Bottle gourd (USVL1VR-Ls)carlsiB210
Carg16580Cp4.1LG08g03530Cucurbita pepo (Zucchini)carcpeB0336
Carg16580CsGy3G012510Cucumber (Gy14) v2carcgybB0251
Carg16580MELO3C006461.2Melon (DHL92) v3.6.1carmedB0248
Carg16580CsaV3_3G012510Cucumber (Chinese Long) v3carcucB0266
Carg16580Cla97C05G085530Watermelon (97103) v2carwmbB0236
Carg16580BhiUN425G27Wax gourdcarwgoB0300
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg16580Carg06202Silver-seed gourdcarcarB274
The following block(s) are covering this gene:
GeneOrganismBlock
Carg16580Wax gourdcarwgoB0290
Carg16580Wax gourdcarwgoB0297
Carg16580Silver-seed gourdcarcarB259
Carg16580Silver-seed gourdcarcarB273
Carg16580Silver-seed gourdcarcarB275
Carg16580Cucumber (Gy14) v2carcgybB0250
Carg16580Cucumber (Gy14) v1carcgyB0276
Carg16580Cucumber (Gy14) v1carcgyB0277
Carg16580Cucurbita maxima (Rimu)carcmaB0326
Carg16580Cucurbita maxima (Rimu)carcmaB0327
Carg16580Cucurbita maxima (Rimu)carcmaB0329
Carg16580Cucurbita maxima (Rimu)carcmaB0330
Carg16580Cucurbita moschata (Rifu)carcmoB0329
Carg16580Cucurbita moschata (Rifu)carcmoB0332
Carg16580Cucurbita moschata (Rifu)carcmoB0333
Carg16580Cucurbita pepo (Zucchini)carcpeB0331
Carg16580Cucurbita pepo (Zucchini)carcpeB0333
Carg16580Cucurbita pepo (Zucchini)carcpeB0334
Carg16580Cucurbita pepo (Zucchini)carcpeB0335
Carg16580Wild cucumber (PI 183967)carcpiB0265
Carg16580Cucumber (Chinese Long) v2carcuB0261
Carg16580Cucumber (Chinese Long) v3carcucB0265
Carg16580Bottle gourd (USVL1VR-Ls)carlsiB209
Carg16580Bottle gourd (USVL1VR-Ls)carlsiB211
Carg16580Melon (DHL92) v3.5.1carmeB0238
Carg16580Melon (DHL92) v3.6.1carmedB0246
Carg16580Watermelon (Charleston Gray)carwcgB0226
Carg16580Watermelon (Charleston Gray)carwcgB0227
Carg16580Watermelon (Charleston Gray)carwcgB0228
Carg16580Watermelon (97103) v1carwmB0224
Carg16580Watermelon (97103) v2carwmbB0237
Carg16580Watermelon (97103) v2carwmbB0238