CmaCh00G004960 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh00G004960
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Transmembrane protein, putative
Location	Cma_Chr00 : 36110188 .. 36111284 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGGAATTTGCCTTGCCTTGCGTAGAGTTCGTGAGTACTATCCACTGTAATAATGTACCAGGAAGTTGTTGGGGTCTTGGATTTGGAGTGGGGTTGCTATCCTTCTCATAAGAACACAATTTGTAAAGAGTGTTTTTCCCACCTCTTTTAGCCTTAAATACAAATTTAGTCGTGTTGTTGAGGTTTCGATTACTACCCTTTTCGAGTTTTCTCCCTATTTACTCAACTGGTTAAAGCGCTCGTACACGAACAATATCCTGAAATCTCACCACAGACAAATCCCTGTTGCTAAACTGGTTAAAGCGCTCGTACACGAACAATATCCTGAAATCTCACCACAGACAAATCCCTGTTGCTAAACGAGCAAAGCAAAACAAAGTTCTTCCCTTTTGACTCTTGCTGGAAACTTCCTCGAGCGAACCCCGTCTCGAGGAGTTTAATGTAAGAAAAGTTGAGTTTGTTGACGGGGTTCGCTCAAGAAAGTCTTTAGCTTTCGGCTCGTTCTTATAATGTTGCTATACATCATGCCTTATGCATACATATCATATCATCAATGTTATCAATTCAAAGATAACTTGCCATATTAGTAGTTAGGACAGGACGCATTTGCTTATGTCGAGGTTTTGGTCAAAACCTTGCAGCTTGTAGAATTATCCAAAAGTTGACACTGTTCTTGTTACTATAAATATCATTGCAAAACCCCATCAACAAACTCAACTTTTCTTACATTAAACTCCTCGAAACGGAAAAAAAAACAAATACAAATATGGGAGTTCTGCACATAACTCTGTCAATGGCTTTCATTCTTTTTCTCTTGCAGCTTCTGCCAAACGCAGCTGGTAGGACACTGCATGAGAAGCCAGCAATGGTGAGAAGAAAGGAACTGGAACTGGAGATGAAGTTGAAGCTGCAGTCTCTTCAGAGGGTCAGAGTGCCACCCTCTGGCCCCTCCGGTTGCACGTTCATTCCCGGCACCAACGGCCCTGGCTGTCCTCTCGAAGTGAGACACTACGCTGGCAACGGTTCAAAGCAACGTCCGAGCACACTCGGTCACTATGCCACCCCTGTTCGTGTCGTCGAGGCTCTCATCTGA

mRNA sequence

ATGGCCGGAATTTGCCTTGCCTTGCGTAGACTTCTGCCAAACGCAGCTGGTAGGACACTGCATGAGAAGCCAGCAATGGTGAGAAGAAAGGAACTGGAACTGGAGATGAAGTTGAAGCTGCAGTCTCTTCAGAGGGTCAGAGTGCCACCCTCTGGCCCCTCCGGTTGCACGTTCATTCCCGGCACCAACGGCCCTGGCTGTCCTCTCGAAGTGAGACACTACGCTGGCAACGGTTCAAAGCAACGTCCGAGCACACTCGGTCACTATGCCACCCCTGTTCGTGTCGTCGAGGCTCTCATCTGA

Coding sequence (CDS)

ATGGCCGGAATTTGCCTTGCCTTGCGTAGACTTCTGCCAAACGCAGCTGGTAGGACACTGCATGAGAAGCCAGCAATGGTGAGAAGAAAGGAACTGGAACTGGAGATGAAGTTGAAGCTGCAGTCTCTTCAGAGGGTCAGAGTGCCACCCTCTGGCCCCTCCGGTTGCACGTTCATTCCCGGCACCAACGGCCCTGGCTGTCCTCTCGAAGTGAGACACTACGCTGGCAACGGTTCAAAGCAACGTCCGAGCACACTCGGTCACTATGCCACCCCTGTTCGTGTCGTCGAGGCTCTCATCTGA

Protein sequence

MAGICLALRRLLPNAAGRTLHEKPAMVRRKELELEMKLKLQSLQRVRVPPSGPSGCTFIPGTNGPGCPLEVRHYAGNGSKQRPSTLGHYATPVRVVEALI

Homology

[Close]

BLAST of CmaCh00G004960 vs. TrEMBL
Match: A0A0A0LA00_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G142940 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 7.5e-29
Identity = 68/97 (70.10%), Postives = 74/97 (76.29%), Query Frame = 1


Query: 4   ICLALRRLLPNAAGRTLHEKPAMVRRKELELEMKLKLQSLQRVRVPPSGPSGCTFIPGTN 63
           I L L +L PN AGRTLHEKP MVRR    +E+ LKLQSLQRV VPPSGPSGCTFIPGTN
Sbjct: 3   ILLLLLQLQPNLAGRTLHEKPPMVRR----MELNLKLQSLQRVSVPPSGPSGCTFIPGTN 62

Query: 64  GPGCPLEVRHYAGNGSKQRPSTLGHYATPVRVVEALI 101
           GPGCPL+ RHY  N S QRPST   YA P RVV+ L+
Sbjct: 63  GPGCPLKERHYVANHSTQRPSTHRRYAAPARVVQNLV 95

[Close]

BLAST of CmaCh00G004960 vs. TrEMBL
Match: W9QW23_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_017421 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 9.6e-08
Identity = 39/90 (43.33%), Postives = 54/90 (60.00%), Query Frame = 1


Query: 1  MAGICLALRRLL------PNAAGRTLHE-KPAMVRRKELELEMKLKLQSLQRVRVPPSGP 60
          +  I LA+  LL       ++A R L++ K  +V+ ++L L      QSL R  VPPSGP
Sbjct: 3  LLNIALAILLLLVLVHSEQSSASRVLNDHKEGLVKEEKLGLGF----QSLPRGPVPPSGP 62

Query: 61 SGCTFIPGTNGPGCPLEVRHYAGNGSKQRP 84
          SGCT+IPG+ GP CPL  +HYAG+ +   P
Sbjct: 63 SGCTYIPGSGGPNCPLGEKHYAGDHATVYP 88

[Close]

BLAST of CmaCh00G004960 vs. TrEMBL
Match: A0A072VM35_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_1g073770 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.1e-07
Identity = 34/79 (43.04%), Postives = 46/79 (58.23%), Query Frame = 1


Query: 4  ICLALRRLLPNAAGRTLHEKPAMVRRKELELEMKLKLQSLQRVRVPPSGPSGCTFIPGTN 63
          + L +  + PN A R L+ K           + +L LQSL +  VPPSGPSGCTFIPG+ 
Sbjct: 12 LLLTISHVEPNIASRVLNTKN----------KFQLSLQSLDKGPVPPSGPSGCTFIPGSG 71

Query: 64 GPGCPLEVRHYAGNGSKQR 83
          G  CPL+  + AGN  ++R
Sbjct: 72 GTNCPLKEMNVAGNIHQRR 80

[Close]

BLAST of CmaCh00G004960 vs. TrEMBL
Match: W9R3U7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_017428 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.1e-07
Identity = 38/90 (42.22%), Postives = 53/90 (58.89%), Query Frame = 1


Query: 1  MAGICLALRRLL------PNAAGRTLHE-KPAMVRRKELELEMKLKLQSLQRVRVPPSGP 60
          +  I LA+  LL       ++A R L++ K  +V+ ++L L      QSL R  VPPSG 
Sbjct: 3  LLNIALAILLLLVLVHSEQSSASRVLNDHKEGLVKEEKLGLGF----QSLPRGPVPPSGS 62

Query: 61 SGCTFIPGTNGPGCPLEVRHYAGNGSKQRP 84
          SGCT+IPG+ GP CPL  +HYAG+ +   P
Sbjct: 63 SGCTYIPGSGGPNCPLGEKHYAGDHATGYP 88

[Close]

BLAST of CmaCh00G004960 vs. TrEMBL
Match: M5XKR6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021967mg PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.2e-06
Identity = 34/92 (36.96%), Postives = 49/92 (53.26%), Query Frame = 1


Query: 4  ICLALRRLLPNAAGRTLHEKPAMVRRKELELEMKLKLQSLQRVRVPPSGPSGCTFIPGTN 63
          + L L  + P A GR L+ +  +++ +       +  QSL R  +PPS  S CT+IPGT 
Sbjct: 12 LLLCLLHVQPKA-GRILYAEARLMKHE------LMNFQSLPRGDLPPSESSKCTYIPGTG 71

Query: 64 GPGCPLEVRHYAGNGSKQRPSTLGHYATPVRV 96
          G GCPL+V++YAG+G     S       P  V
Sbjct: 72 GSGCPLKVKNYAGHGLSHHASAYPRLMVPFGV 96

[Close]

BLAST of CmaCh00G004960 vs. NCBI nr
Match: gi|700201768|gb|KGN56901.1| (hypothetical protein Csa_3G142940 [Cucumis sativus])

HSP 1 Score: 134.4 bits (337), Expect = 1.1e-28
Identity = 68/97 (70.10%), Postives = 74/97 (76.29%), Query Frame = 1


Query: 4   ICLALRRLLPNAAGRTLHEKPAMVRRKELELEMKLKLQSLQRVRVPPSGPSGCTFIPGTN 63
           I L L +L PN AGRTLHEKP MVRR    +E+ LKLQSLQRV VPPSGPSGCTFIPGTN
Sbjct: 3   ILLLLLQLQPNLAGRTLHEKPPMVRR----MELNLKLQSLQRVSVPPSGPSGCTFIPGTN 62

Query: 64  GPGCPLEVRHYAGNGSKQRPSTLGHYATPVRVVEALI 101
           GPGCPL+ RHY  N S QRPST   YA P RVV+ L+
Sbjct: 63  GPGCPLKERHYVANHSTQRPSTHRRYAAPARVVQNLV 95

[Close]

BLAST of CmaCh00G004960 vs. NCBI nr
Match: gi|703091156|ref|XP_010094274.1| (hypothetical protein L484_017421 [Morus notabilis])

HSP 1 Score: 64.3 bits (155), Expect = 1.4e-07
Identity = 39/90 (43.33%), Postives = 54/90 (60.00%), Query Frame = 1


Query: 1  MAGICLALRRLL------PNAAGRTLHE-KPAMVRRKELELEMKLKLQSLQRVRVPPSGP 60
          +  I LA+  LL       ++A R L++ K  +V+ ++L L      QSL R  VPPSGP
Sbjct: 3  LLNIALAILLLLVLVHSEQSSASRVLNDHKEGLVKEEKLGLGF----QSLPRGPVPPSGP 62

Query: 61 SGCTFIPGTNGPGCPLEVRHYAGNGSKQRP 84
          SGCT+IPG+ GP CPL  +HYAG+ +   P
Sbjct: 63 SGCTYIPGSGGPNCPLGEKHYAGDHATVYP 88

[Close]

BLAST of CmaCh00G004960 vs. NCBI nr
Match: gi|922403037|ref|XP_013468654.1| (hypothetical protein MTR_1g073770 [Medicago truncatula])

HSP 1 Score: 63.2 bits (152), Expect = 3.1e-07
Identity = 34/79 (43.04%), Postives = 46/79 (58.23%), Query Frame = 1


Query: 4  ICLALRRLLPNAAGRTLHEKPAMVRRKELELEMKLKLQSLQRVRVPPSGPSGCTFIPGTN 63
          + L +  + PN A R L+ K           + +L LQSL +  VPPSGPSGCTFIPG+ 
Sbjct: 12 LLLTISHVEPNIASRVLNTKN----------KFQLSLQSLDKGPVPPSGPSGCTFIPGSG 71

Query: 64 GPGCPLEVRHYAGNGSKQR 83
          G  CPL+  + AGN  ++R
Sbjct: 72 GTNCPLKEMNVAGNIHQRR 80

[Close]

BLAST of CmaCh00G004960 vs. NCBI nr
Match: gi|703091186|ref|XP_010094281.1| (hypothetical protein L484_017428 [Morus notabilis])

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-06
Identity = 38/90 (42.22%), Postives = 53/90 (58.89%), Query Frame = 1


Query: 1  MAGICLALRRLL------PNAAGRTLHE-KPAMVRRKELELEMKLKLQSLQRVRVPPSGP 60
          +  I LA+  LL       ++A R L++ K  +V+ ++L L      QSL R  VPPSG 
Sbjct: 3  LLNIALAILLLLVLVHSEQSSASRVLNDHKEGLVKEEKLGLGF----QSLPRGPVPPSGS 62

Query: 61 SGCTFIPGTNGPGCPLEVRHYAGNGSKQRP 84
          SGCT+IPG+ GP CPL  +HYAG+ +   P
Sbjct: 63 SGCTYIPGSGGPNCPLGEKHYAGDHATGYP 88

[Close]

BLAST of CmaCh00G004960 vs. NCBI nr
Match: gi|976903423|gb|KVH91313.1| (hypothetical protein Ccrd_006667 [Cynara cardunculus var. scolymus])

HSP 1 Score: 58.5 bits (140), Expect = 7.5e-06
Identity = 30/56 (53.57%), Postives = 37/56 (66.07%), Query Frame = 1


Query: 13 PNAAGRTLHEKPAMVRRKELELEMKLKLQSLQRVRVPPSGPSGCTFIPGTNGPGCP 69
          P  AGR LHEK  ++  K   +   L  QSL R  VPP+GPSGCT+IPG++GP CP
Sbjct: 22 PIKAGRVLHEKDRLIDVKSGNM---LVFQSLPRGPVPPAGPSGCTYIPGSHGPPCP 74

The following BLAST results are available for this feature:

BLAST of CmaCh00G004960 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh00G004960 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LA00_CUCSA	7.5e-29	70.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G142940 PE=4 SV=1	[more]
W9QW23_9ROSA	9.6e-08	43.33	Uncharacterized protein OS=Morus notabilis GN=L484_017421 PE=4 SV=1	[more]
A0A072VM35_MEDTR	2.1e-07	43.04	Uncharacterized protein OS=Medicago truncatula GN=MTR_1g073770 PE=4 SV=1	[more]
W9R3U7_9ROSA	8.1e-07	42.22	Uncharacterized protein OS=Morus notabilis GN=L484_017428 PE=4 SV=1	[more]
M5XKR6_PRUPE	5.2e-06	36.96	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021967mg PE=4 SV=1	[more]

BLAST of CmaCh00G004960 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh00G004960 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201768\|gb\|KGN56901.1\|	1.1e-28	70.10	hypothetical protein Csa_3G142940 [Cucumis sativus]	[more]
gi\|703091156\|ref\|XP_010094274.1\|	1.4e-07	43.33	hypothetical protein L484_017421 [Morus notabilis]	[more]
gi\|922403037\|ref\|XP_013468654.1\|	3.1e-07	43.04	hypothetical protein MTR_1g073770 [Medicago truncatula]	[more]
gi\|703091186\|ref\|XP_010094281.1\|	1.2e-06	42.22	hypothetical protein L484_017428 [Morus notabilis]	[more]
gi\|976903423\|gb\|KVH91313.1\|	7.5e-06	53.57	hypothetical protein Ccrd_006667 [Cynara cardunculus var. scolymus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G004960.1	CmaCh00G004960.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh00G004960	Cla021557	Watermelon (97103) v1	cmawmB003
CmaCh00G004960	Csa3G142940	Cucumber (Chinese Long) v2	cmacuB003
CmaCh00G004960	MELO3C006461	Melon (DHL92) v3.5.1	cmameB003
CmaCh00G004960	CSPI03G12380	Wild cucumber (PI 183967)	cmacpiB003
CmaCh00G004960	CmoCh14G018230	Cucurbita moschata (Rifu)	cmacmoB012
CmaCh00G004960	Lsi05G016880	Bottle gourd (USVL1VR-Ls)	cmalsiB010
CmaCh00G004960	Cp4.1LG08g03530	Cucurbita pepo (Zucchini)	cmacpeB019
CmaCh00G004960	MELO3C006461.2	Melon (DHL92) v3.6.1	cmamedB002
CmaCh00G004960	CsaV3_3G012510	Cucumber (Chinese Long) v3	cmacucB0002
CmaCh00G004960	Cla97C05G085530	Watermelon (97103) v2	cmawmbB002
CmaCh00G004960	CsGy3G012510	Cucumber (Gy14) v2	cgybcmaB275
CmaCh00G004960	Carg16580	Silver-seed gourd	carcmaB0323
CmaCh00G004960	Carg06202	Silver-seed gourd	carcmaB1318

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh00G004960	CmaCh14G017860	Cucurbita maxima (Rimu)	cmacmaB015

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh00G004960	Cucurbita maxima (Rimu)	cmacmaB003
CmaCh00G004960	Cucurbita maxima (Rimu)	cmacmaB027
CmaCh00G004960	Cucurbita moschata (Rifu)	cmacmoB017