Carg16580-RA (mRNA) Silver-seed gourd

Overview
NameCarg16580-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_089 : 422126 .. 423206 (+)
Sequence length258
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGGAATTTGGCTTCCCTGCCTAGACTTGGTGGGTACTGTCCACTGTAATAACGTACCAGGAAATTGTTGGGGTCTTGGATTTGGAGTGGGGTTGTAATCCTTCTCATAAGAAAACAATTTGTAAAGAGTGCCTTCATCGCCTTCTCTTTGCTAGCCTTAAATGCAAATTTAGTCGTATCGTCGAGGTTTTGATTACTTCACCTTTCGAGTTTCCTGTCTATTTGGTTATTGGTCAAAAACGTATTGCGTATACGACAATACCCTGAAACCTCACCTCTGCTAAATAGAGCTCAAGTATTTTTCTCTTTTGTTTCTTTTCCATCCATTCAATAATATTTCCTTTCTGTGTATCTGTTTCAAAATCAAACGAATATTTAATCCAATCCCTCACCTTAGACAAATCCCATTTGCTATCCAAGCAAAACAAAGTTCTTCCCTTTGACTTTCATCTTCTGCCTGCTTTGCTGGAAATTTCCTCGCATGAACTCCACCATGAAAGTCGCTGTCTTTCGGCTCATTCTTATAATGCTACACACATCATGCCTGATACATACACACATACATATCTCTTGAAGTCCTCAAGAATGTTCCTGTTCAAATCAAAGTTGCCTCTATTAGTGGTTAGGAGAGGACCCATTCAATTCTGTCGAGGCTTTGGTCAAATCCTTGCAGCTTGTACAATAATCCAAAACTTGACACTCTTCATTTTACTATAAATATCGTTGCAATCCCATCAACAAACTCAACCTCTTCTTTCATTTAATCTCTCGAAAGGGAAACAGAAACAGAATATGAAAATTCTTCACATATCTCTTACTCTGGCAATGGTTTTCCTTCTTTTTCTCTTGCAGCTTCACCCAAACATAGCTGGTAGAACTCTGCATGAGAACCCATCAATGGTGAGAAGAACGGAGCTGAAGCTGAAGCTGAAGCTGCAGTCTCTTCAAAGGGTCAGTGTACCGCCCTCCGGCCCCTCTGGTTGCACCTTCATTCCCGGCACCAACGGCCCCGGCTGTCCCCAGAAAGTGAGGCACTACACCATCAACCATTCGACTCGACGTCCAAGCGCTCACTGA

mRNA sequence

ATGGATGGAATTTGGCTTCCCTGCCTAGACTTGCTTCACCCAAACATAGCTGGTAGAACTCTGCATGAGAACCCATCAATGGTGAGAAGAACGGAGCTGAAGCTGAAGCTGAAGCTGCAGTCTCTTCAAAGGGTCAGTGTACCGCCCTCCGGCCCCTCTGGTTGCACCTTCATTCCCGGCACCAACGGCCCCGGCTGTCCCCAGAAAGTGAGGCACTACACCATCAACCATTCGACTCGACGTCCAAGCGCTCACTGA

Coding sequence (CDS)

ATGGATGGAATTTGGCTTCCCTGCCTAGACTTGCTTCACCCAAACATAGCTGGTAGAACTCTGCATGAGAACCCATCAATGGTGAGAAGAACGGAGCTGAAGCTGAAGCTGAAGCTGCAGTCTCTTCAAAGGGTCAGTGTACCGCCCTCCGGCCCCTCTGGTTGCACCTTCATTCCCGGCACCAACGGCCCCGGCTGTCCCCAGAAAGTGAGGCACTACACCATCAACCATTCGACTCGACGTCCAAGCGCTCACTGA

Protein sequence

MDGIWLPCLDLLHPNIAGRTLHENPSMVRRTELKLKLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPQKVRHYTINHSTRRPSAH
Homology
[Close]
BLAST of Carg16580-RA vs. NCBI nr
Match: KGN56901.1 (hypothetical protein Csa_3G142940 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 6.4e-26
Identity = 60/74 (81.08%), Postives = 62/74 (83.78%), Query Frame = 0 

Query: 12 LHPNIAGRTLHENPSMVRRTELKLKLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPQKVR 71
          L PN+AGRTLHE P MVRR E  L LKLQSLQRVSVPPSGPSGCTFIPGTNGPGCP K R
Sbjct: 10 LQPNLAGRTLHEKPPMVRRME--LNLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPLKER 69

Query: 72 HYTINHSTRRPSAH 86
          HY  NHST+RPS H
Sbjct: 70 HYVANHSTQRPSTH 81

[Close]
BLAST of Carg16580-RA vs. NCBI nr
Match: EXB55548.1 (hypothetical protein L484_017421 [Morus notabilis])

HSP 1 Score: 65.9 bits (159), Expect = 7.8e-08
Identity = 33/66 (50.00%), Postives = 43/66 (65.15%), Query Frame = 0 

Query: 17 AGRTLHENPSMVRRTELKLKLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPQKVRHYTIN 76
          A R L+++   + + E KL L  QSL R  VPPSGPSGCT+IPG+ GP CP   +HY  +
Sbjct: 24 ASRVLNDHKEGLVKEE-KLGLGFQSLPRGPVPPSGPSGCTYIPGSGGPNCPLGEKHYAGD 83

Query: 77 HSTRRP 83
          H+T  P
Sbjct: 84 HATVYP 88

[Close]
BLAST of Carg16580-RA vs. NCBI nr
Match: PRQ36393.1 (hypothetical protein RchiOBHm_Chr4g0391021 [Rosa chinensis])

HSP 1 Score: 65.5 bits (158), Expect = 1.0e-07
Identity = 37/80 (46.25%), Postives = 47/80 (58.75%), Query Frame = 0 

Query: 6  LPCLDLLHPNIAGRTLHENPSMVRRTELKLKLKLQSLQRVSVPPSGPSGCTFIPGTNGPG 65
          L C+  + PN A R L+ N  M+ + EL   + LQSL R   PP+G S CT+IPGT G G
Sbjct: 13 LLCILHVQPNRASRVLY-NDGMLMKREL---ISLQSLPRGETPPTGSSQCTYIPGTGGSG 72

Query: 66 CPQKVRHYTINHSTRRPSAH 86
          CP KV++Y   H   RP  H
Sbjct: 73 CPLKVKNYAGGHG--RPHHH 86

[Close]
BLAST of Carg16580-RA vs. NCBI nr
Match: POE98886.1 (hypothetical protein CFP56_44648 [Quercus suber])

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-07
Identity = 32/59 (54.24%), Postives = 35/59 (59.32%), Query Frame = 0 

Query: 18 GRTLHENPSMVRRTELKLKLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPQKVRHYTIN 77
          G  LH+ P            +LQSLQR  V PSGPSGCT+IPGTNGPGCP    HY  N
Sbjct: 35 GELLHKEP------------RLQSLQRGPVAPSGPSGCTYIPGTNGPGCPVNEMHYARN 81

[Close]
BLAST of Carg16580-RA vs. NCBI nr
Match: XP_024931769.1 (uncharacterized protein LOC112492397 [Ziziphus jujuba])

HSP 1 Score: 63.5 bits (153), Expect = 3.9e-07
Identity = 32/72 (44.44%), Postives = 44/72 (61.11%), Query Frame = 0 

Query: 14 PNIAGRTLHENPSMVRRTELKLKLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPQKVRH- 73
          P+ A R LH+   + ++     KL LQSLQR  +PPSG SGCT+IPGT G  CP   +H 
Sbjct: 21 PSRASRMLHDEEEIAKK-----KLGLQSLQRGDLPPSGASGCTYIPGTGGSSCPLNGKHH 80

Query: 74 --YTINHSTRRP 83
            + ++H+T  P
Sbjct: 81 AGHVLSHATAYP 87

[Close]
BLAST of Carg16580-RA vs. TrEMBL
Match: tr|A0A0A0LA00|A0A0A0LA00_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G142940 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.2e-26
Identity = 60/74 (81.08%), Postives = 62/74 (83.78%), Query Frame = 0 

Query: 12 LHPNIAGRTLHENPSMVRRTELKLKLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPQKVR 71
          L PN+AGRTLHE P MVRR E  L LKLQSLQRVSVPPSGPSGCTFIPGTNGPGCP K R
Sbjct: 10 LQPNLAGRTLHEKPPMVRRME--LNLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPLKER 69

Query: 72 HYTINHSTRRPSAH 86
          HY  NHST+RPS H
Sbjct: 70 HYVANHSTQRPSTH 81

[Close]
BLAST of Carg16580-RA vs. TrEMBL
Match: tr|W9QW23|W9QW23_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_017421 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.2e-08
Identity = 33/66 (50.00%), Postives = 43/66 (65.15%), Query Frame = 0 

Query: 17 AGRTLHENPSMVRRTELKLKLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPQKVRHYTIN 76
          A R L+++   + + E KL L  QSL R  VPPSGPSGCT+IPG+ GP CP   +HY  +
Sbjct: 24 ASRVLNDHKEGLVKEE-KLGLGFQSLPRGPVPPSGPSGCTYIPGSGGPNCPLGEKHYAGD 83

Query: 77 HSTRRP 83
          H+T  P
Sbjct: 84 HATVYP 88

[Close]
BLAST of Carg16580-RA vs. TrEMBL
Match: tr|A0A2P6QQE6|A0A2P6QQE6_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0391021 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.7e-08
Identity = 37/80 (46.25%), Postives = 47/80 (58.75%), Query Frame = 0 

Query: 6  LPCLDLLHPNIAGRTLHENPSMVRRTELKLKLKLQSLQRVSVPPSGPSGCTFIPGTNGPG 65
          L C+  + PN A R L+ N  M+ + EL   + LQSL R   PP+G S CT+IPGT G G
Sbjct: 13 LLCILHVQPNRASRVLY-NDGMLMKREL---ISLQSLPRGETPPTGSSQCTYIPGTGGSG 72

Query: 66 CPQKVRHYTINHSTRRPSAH 86
          CP KV++Y   H   RP  H
Sbjct: 73 CPLKVKNYAGGHG--RPHHH 86

[Close]
BLAST of Carg16580-RA vs. TrEMBL
Match: tr|A0A2P4L126|A0A2P4L126_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_44648 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.8e-08
Identity = 32/59 (54.24%), Postives = 35/59 (59.32%), Query Frame = 0 

Query: 18 GRTLHENPSMVRRTELKLKLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPQKVRHYTIN 77
          G  LH+ P            +LQSLQR  V PSGPSGCT+IPGTNGPGCP    HY  N
Sbjct: 35 GELLHKEP------------RLQSLQRGPVAPSGPSGCTYIPGTNGPGCPVNEMHYARN 81

[Close]
BLAST of Carg16580-RA vs. TrEMBL
Match: tr|A0A072VM35|A0A072VM35_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=25484394 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.3e-07
Identity = 34/70 (48.57%), Postives = 41/70 (58.57%), Query Frame = 0 

Query: 12 LHPNIAGRTLHENPSMVRRTELKLKLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPQKVR 71
          + PNIA R L+        T+ K +L LQSL +  VPPSGPSGCTFIPG+ G  CP K  
Sbjct: 19 VEPNIASRVLN--------TKNKFQLSLQSLDKGPVPPSGPSGCTFIPGSGGTNCPLKEM 78

Query: 72 HYTINHSTRR 82
          +   N   RR
Sbjct: 79 NVAGNIHQRR 80

The following BLAST results are available for this feature:
BLAST of Carg16580-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KGN56901.16.4e-2681.08hypothetical protein Csa_3G142940 [Cucumis sativus][more]
EXB55548.17.8e-0850.00hypothetical protein L484_017421 [Morus notabilis][more]
PRQ36393.11.0e-0746.25hypothetical protein RchiOBHm_Chr4g0391021 [Rosa chinensis][more]
POE98886.11.3e-0754.24hypothetical protein CFP56_44648 [Quercus suber][more]
XP_024931769.13.9e-0744.44uncharacterized protein LOC112492397 [Ziziphus jujuba][more]
BLAST of Carg16580-RA vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg16580-RA vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg16580-RA vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LA00|A0A0A0LA00_CUCSA4.2e-2681.08Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G142940 PE=4 SV=1[more]
tr|W9QW23|W9QW23_9ROSA5.2e-0850.00Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_017421 PE=4 SV=1[more]
tr|A0A2P6QQE6|A0A2P6QQE6_ROSCH6.7e-0846.25Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0391021 PE=4... [more]
tr|A0A2P4L126|A0A2P4L126_QUESU8.8e-0854.24Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_44648 PE=4 SV=1[more]
tr|A0A072VM35|A0A072VM35_MEDTR3.3e-0748.57Uncharacterized protein OS=Medicago truncatula OX=3880 GN=25484394 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg16580Carg16580gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg16580-RA.exon.1Carg16580-RA.exon.1exon
Carg16580-RA.exon.2Carg16580-RA.exon.2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg16580-RA.CDS.1Carg16580-RA.CDS.1CDS
Carg16580-RA.CDS.2Carg16580-RA.CDS.2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg16580-RACarg16580-RA-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33592FAMILY NOT NAMEDcoord: 13..77
NoneNo IPR availablePANTHERPTHR33592:SF1SUBFAMILY NOT NAMEDcoord: 13..77