Carg25449 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25449
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein
Location	Cucurbita_argyrosperma_scaffold_256 : 60068 .. 60569 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCCACATCTCGATTGGCTAGATTCATAAGCGAAGCTTGCCCTCCCCAATTCGTCTCTGTAATGAGGCGCAGAAGCCCCAAAGTTCTAGACACCATTAACGAAGAAGATCACAGAGAAGCTCTCTCCTCCTCTTCCTCCTTGAAGATCGACAAATTCTCTGTTTCTTCGCTGCCGTCTACCATGGCTGCTTCGCCGCCGTCTCCTGCAACTTCCGCCGCCGTTAGTTCCAAATACTTTCTCAATCAGGTCCCCTTGAGGTCCTTCTCCCTTTTCGAGCACTGAGATTCGGTTTTTAATTACTTTCTATTTTTAGTTTCAATGGCCTTCGGAATCTGCTTTTCGTTTTTGCGCCAATCGGATCGGGTCCATTCCGGCCGGTTATGGTGTTGTAGATATCGAATCGACGGCGGATTCGGCTGCCGCCGGTGATGGTGGTCGTCCTGTATTGTGTACTCCATTGTCTTATGCGATGAAACTCTTAGAAAATATAAAATAA

mRNA sequence

ATGGCAGCCACATCTCGATTGGCTAGATTCATAAGCGAAGCTTGCCCTCCCCAATTCGTCTCTGTAATGAGGCGCAGAAGCCCCAAAGTTCTAGACACCATTAACGAAGAAGATCACAGAGAAGCTCTCTCCTCCTCTTCCTCCTTGAAGATCGACAAATTCTCTGTTTCTTCGCTGCCGTCTACCATGGCTGCTTCGCCGCCGTCTCCTGCAACTTCCGCCGCCGTTAGTTCCAAATACTTTCTCAATCAGTTTCAATGGCCTTCGGAATCTGCTTTTCGTTTTTGCGCCAATCGGATCGGGTCCATTCCGGCCGGTTATGGTGTTGTAGATATCGAATCGACGGCGGATTCGGCTGCCGCCGGTGATGGTGGTCGTCCTGTATTGTGTACTCCATTGTCTTATGCGATGAAACTCTTAGAAAATATAAAATAA

Coding sequence (CDS)

ATGGCAGCCACATCTCGATTGGCTAGATTCATAAGCGAAGCTTGCCCTCCCCAATTCGTCTCTGTAATGAGGCGCAGAAGCCCCAAAGTTCTAGACACCATTAACGAAGAAGATCACAGAGAAGCTCTCTCCTCCTCTTCCTCCTTGAAGATCGACAAATTCTCTGTTTCTTCGCTGCCGTCTACCATGGCTGCTTCGCCGCCGTCTCCTGCAACTTCCGCCGCCGTTAGTTCCAAATACTTTCTCAATCAGTTTCAATGGCCTTCGGAATCTGCTTTTCGTTTTTGCGCCAATCGGATCGGGTCCATTCCGGCCGGTTATGGTGTTGTAGATATCGAATCGACGGCGGATTCGGCTGCCGCCGGTGATGGTGGTCGTCCTGTATTGTGTACTCCATTGTCTTATGCGATGAAACTCTTAGAAAATATAAAATAA

Protein sequence

MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHREALSSSSSLKIDKFSVSSLPSTMAASPPSPATSAAVSSKYFLNQFQWPSESAFRFCANRIGSIPAGYGVVDIESTADSAAAGDGGRPVLCTPLSYAMKLLENIK

Homology

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BLAST of Carg25449 vs. NCBI nr
Match: KGN65872.1 (hypothetical protein Csa_1G534780 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 3.2e-22
Identity = 66/89 (74.16%), Postives = 73/89 (82.02%), Query Frame = 0


Query: 1  MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHREALSSSSSLKIDKFSVSSLP 60
          MAATSRLARFISEACPPQFVSVMRRRSP+VLDTINEED REAL SSSS KIDKFSV    
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPRVLDTINEEDQREALVSSSSFKIDKFSV---- 60

Query: 61 STMAASPPSP-ATSAAVSSKYFLNQFQWP 89
               SPPSP +++AA++SKYFL+Q   P
Sbjct: 61 ----PSPPSPDSSAAAINSKYFLDQVPVP 81

[Close]

BLAST of Carg25449 vs. NCBI nr
Match: PRQ29508.1 (hypothetical protein RchiOBHm_Chr5g0014631 [Rosa chinensis])

HSP 1 Score: 67.8 bits (164), Expect = 3.5e-08
Identity = 44/81 (54.32%), Postives = 54/81 (66.67%), Query Frame = 0


Query: 3   ATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHREALSSSSSLKIDKFSVSSLPST 62
           A +RLARFI+EA PPQ VSVMRRR+ KVLDTI EED RE  S + SL       S+LPS+
Sbjct: 53  ANARLARFITEAAPPQIVSVMRRRTSKVLDTITEED-REYASPNDSLNSSPKGSSALPSS 112

Query: 63  MAASPP-SPATSAAVSSKYFL 83
             ++P    A +A   +KYFL
Sbjct: 113 SPSAPSFGSAAAAGTDAKYFL 132

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BLAST of Carg25449 vs. NCBI nr
Match: OIS96718.1 (hypothetical protein A4A49_39256 [Nicotiana attenuata])

HSP 1 Score: 65.1 bits (157), Expect = 2.3e-07
Identity = 42/84 (50.00%), Postives = 55/84 (65.48%), Query Frame = 0


Query: 3   ATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHREALSSSSSLKIDKFSVSSLPST 62
           A +R+ARF++E  PPQFV+VMR+R+ K+LDTI EE+     S S SLK      SSLPS 
Sbjct: 80  ANARIARFVTEVAPPQFVNVMRQRASKMLDTIKEEEREAGTSESLSLK------SSLPS- 139

Query: 63  MAASPPSPATSAAVSSKYFLNQFQ 87
            + S  S + S A +SKYFL + Q
Sbjct: 140 -STSVYSASASNAKNSKYFLKEVQ 155

[Close]

BLAST of Carg25449 vs. NCBI nr
Match: OWM63852.1 (hypothetical protein CDL15_Pgr006114 [Punica granatum] >PKI68059.1 hypothetical protein CRG98_011655 [Punica granatum])

HSP 1 Score: 64.3 bits (155), Expect = 3.8e-07
Identity = 45/91 (49.45%), Postives = 60/91 (65.93%), Query Frame = 0


Query: 3  ATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHR-EALSSSSSLKIDKFSVSSL-- 62
          A SRLARF+ EA PPQFVSVMR R+ K+LDTI+EE+ R E  SS  S  +++ S  S   
Sbjct: 2  ANSRLARFVMEAAPPQFVSVMRHRTTKMLDTISEEETRGEFTSSDHSKSLNRSSSFSQKN 61

Query: 63 PSTMAASPPSPATSAA------VSSKYFLNQ 85
           ST+++S PS + SA+      V S+YF N+
Sbjct: 62 TSTLSSSAPSHSPSASRIAMTTVGSRYFYNE 92

[Close]

BLAST of Carg25449 vs. NCBI nr
Match: ESR40272.1 (hypothetical protein CICLE_v10026858mg [Citrus clementina])

HSP 1 Score: 63.5 bits (153), Expect = 6.6e-07
Identity = 42/84 (50.00%), Postives = 52/84 (61.90%), Query Frame = 0


Query: 3  ATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHREALSSSSSLKIDKFSVSSLPST 62
          A SR+ARF  E  PPQFVSVMR R+PK+LDTI+EE+  + +S S +L   + S SS    
Sbjct: 2  ANSRMARFFMEVAPPQFVSVMRHRTPKMLDTISEEE--KDVSGSDALASTRRSFSS---- 61

Query: 63 MAASPPSPATSAAVSSKYFLNQFQ 87
            +SP S   S A  SKYFL   Q
Sbjct: 62 -CSSPSSARASVASDSKYFLEGVQ 78

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BLAST of Carg25449 vs. TAIR10
Match: AT1G30260.1 (BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT4G21060.1))

HSP 1 Score: 57.8 bits (138), Expect = 6.5e-09
Identity = 29/43 (67.44%), Postives = 33/43 (76.74%), Query Frame = 0


Query: 3  ATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHREALSS 46
          ATSRLARFI+E  PPQFV+VMRRR+ KVLDTI EE+      S
Sbjct: 2  ATSRLARFITEVAPPQFVTVMRRRTAKVLDTIKEEEREVGTDS 44

[Close]

BLAST of Carg25449 vs. TAIR10
Match: AT4G21060.1 (Galactosyltransferase family protein)

HSP 1 Score: 50.8 bits (120), Expect = 8.0e-07
Identity = 26/41 (63.41%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 3  ATSRLARFISEACPPQFVSVMRRR--SPKVLDTINEEDHRE 42
          ATSRLARF+SE  PPQFV+VMRR   + + LDTI EE+++E
Sbjct: 2  ATSRLARFVSEVAPPQFVTVMRRHRAAKQKLDTIKEEENKE 42

[Close]

BLAST of Carg25449 vs. TrEMBL
Match: tr|A0A0A0LYE6|A0A0A0LYE6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G534780 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.1e-22
Identity = 66/89 (74.16%), Postives = 73/89 (82.02%), Query Frame = 0


Query: 1  MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHREALSSSSSLKIDKFSVSSLP 60
          MAATSRLARFISEACPPQFVSVMRRRSP+VLDTINEED REAL SSSS KIDKFSV    
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPRVLDTINEEDQREALVSSSSFKIDKFSV---- 60

Query: 61 STMAASPPSP-ATSAAVSSKYFLNQFQWP 89
               SPPSP +++AA++SKYFL+Q   P
Sbjct: 61 ----PSPPSPDSSAAAINSKYFLDQVPVP 81

[Close]

BLAST of Carg25449 vs. TrEMBL
Match: tr|A0A2P6Q5Q7|A0A2P6Q5Q7_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0014631 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.3e-08
Identity = 44/81 (54.32%), Postives = 54/81 (66.67%), Query Frame = 0


Query: 3   ATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHREALSSSSSLKIDKFSVSSLPST 62
           A +RLARFI+EA PPQ VSVMRRR+ KVLDTI EED RE  S + SL       S+LPS+
Sbjct: 53  ANARLARFITEAAPPQIVSVMRRRTSKVLDTITEED-REYASPNDSLNSSPKGSSALPSS 112

Query: 63  MAASPP-SPATSAAVSSKYFL 83
             ++P    A +A   +KYFL
Sbjct: 113 SPSAPSFGSAAAAGTDAKYFL 132

[Close]

BLAST of Carg25449 vs. TrEMBL
Match: tr|A0A1J6IG54|A0A1J6IG54_NICAT (Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_39256 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.5e-07
Identity = 42/84 (50.00%), Postives = 55/84 (65.48%), Query Frame = 0


Query: 3   ATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHREALSSSSSLKIDKFSVSSLPST 62
           A +R+ARF++E  PPQFV+VMR+R+ K+LDTI EE+     S S SLK      SSLPS 
Sbjct: 80  ANARIARFVTEVAPPQFVNVMRQRASKMLDTIKEEEREAGTSESLSLK------SSLPS- 139

Query: 63  MAASPPSPATSAAVSSKYFLNQFQ 87
            + S  S + S A +SKYFL + Q
Sbjct: 140 -STSVYSASASNAKNSKYFLKEVQ 155

[Close]

BLAST of Carg25449 vs. TrEMBL
Match: tr|A0A218VVC5|A0A218VVC5_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr006114 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.5e-07
Identity = 45/91 (49.45%), Postives = 60/91 (65.93%), Query Frame = 0


Query: 3  ATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHR-EALSSSSSLKIDKFSVSSL-- 62
          A SRLARF+ EA PPQFVSVMR R+ K+LDTI+EE+ R E  SS  S  +++ S  S   
Sbjct: 2  ANSRLARFVMEAAPPQFVSVMRHRTTKMLDTISEEETRGEFTSSDHSKSLNRSSSFSQKN 61

Query: 63 PSTMAASPPSPATSAA------VSSKYFLNQ 85
           ST+++S PS + SA+      V S+YF N+
Sbjct: 62 TSTLSSSAPSHSPSASRIAMTTVGSRYFYNE 92

[Close]

BLAST of Carg25449 vs. TrEMBL
Match: tr|V4SI34|V4SI34_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10026858mg PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.3e-07
Identity = 42/84 (50.00%), Postives = 52/84 (61.90%), Query Frame = 0


Query: 3  ATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHREALSSSSSLKIDKFSVSSLPST 62
          A SR+ARF  E  PPQFVSVMR R+PK+LDTI+EE+  + +S S +L   + S SS    
Sbjct: 2  ANSRMARFFMEVAPPQFVSVMRHRTPKMLDTISEEE--KDVSGSDALASTRRSFSS---- 61

Query: 63 MAASPPSPATSAAVSSKYFLNQFQ 87
            +SP S   S A  SKYFL   Q
Sbjct: 62 -CSSPSSARASVASDSKYFLEGVQ 78

The following BLAST results are available for this feature:

BLAST of Carg25449 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65872.1	3.2e-22	74.16	hypothetical protein Csa_1G534780 [Cucumis sativus]	[more]
PRQ29508.1	3.5e-08	54.32	hypothetical protein RchiOBHm_Chr5g0014631 [Rosa chinensis]	[more]
OIS96718.1	2.3e-07	50.00	hypothetical protein A4A49_39256 [Nicotiana attenuata]	[more]
OWM63852.1	3.8e-07	49.45	hypothetical protein CDL15_Pgr006114 [Punica granatum] >PKI68059.1 hypothetical ...	[more]
ESR40272.1	6.6e-07	50.00	hypothetical protein CICLE_v10026858mg [Citrus clementina]	[more]

BLAST of Carg25449 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G30260.1	6.5e-09	67.44	BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein...	[more]
AT4G21060.1	8.0e-07	63.41	Galactosyltransferase family protein	[more]

BLAST of Carg25449 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg25449 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LYE6\|A0A0A0LYE6_CUCSA	2.1e-22	74.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G534780 PE=4 SV=1	[more]
tr\|A0A2P6Q5Q7\|A0A2P6Q5Q7_ROSCH	2.3e-08	54.32	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0014631 PE=4...	[more]
tr\|A0A1J6IG54\|A0A1J6IG54_NICAT	1.5e-07	50.00	Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_39256 PE=4 SV=1	[more]
tr\|A0A218VVC5\|A0A218VVC5_PUNGR	2.5e-07	49.45	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr006114 PE=4 SV=1	[more]
tr\|V4SI34\|V4SI34_9ROSI	4.3e-07	50.00	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10026858mg PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25449-RA	Carg25449-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35101	FAMILY NOT NAMED	coord: 3..84

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25449	Cla019557	Watermelon (97103) v1	carwmB0196
Carg25449	Csa1G534780	Cucumber (Chinese Long) v2	carcuB0231
Carg25449	MELO3C002763	Melon (DHL92) v3.5.1	carmeB0212
Carg25449	ClCG03G006550	Watermelon (Charleston Gray)	carwcgB0202
Carg25449	CSPI01G24530	Wild cucumber (PI 183967)	carcpiB0238
Carg25449	Cucsa.152100	Cucumber (Gy14) v1	carcgyB0249
Carg25449	CmaCh13G005170	Cucurbita maxima (Rimu)	carcmaB0285
Carg25449	CmaCh18G004870	Cucurbita maxima (Rimu)	carcmaB0286
Carg25449	CmoCh18G004630	Cucurbita moschata (Rifu)	carcmoB0291
Carg25449	CmoCh13G005470	Cucurbita moschata (Rifu)	carcmoB0290
Carg25449	Lsi02G009150	Bottle gourd (USVL1VR-Ls)	carlsiB184
Carg25449	Cp4.1LG20g05340	Cucurbita pepo (Zucchini)	carcpeB0294
Carg25449	MELO3C002763.2	Melon (DHL92) v3.6.1	carmedB0217
Carg25449	CsaV3_1G036810	Cucumber (Chinese Long) v3	carcucB0235
Carg25449	Cla97C03G057830	Watermelon (97103) v2	carwmbB0210
Carg25449	Bhi08G001659	Wax gourd	carwgoB0257

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25449	Silver-seed gourd	carcarB243
Carg25449	Cucumber (Gy14) v2	carcgybB0220
Carg25449	Cucurbita pepo (Zucchini)	carcpeB0293