CmoCh13G005470 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh13G005470
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionBEST Arabidopsis thaliana protein match is: Galact s in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
LocationCmo_Chr13 : 6326792 .. 6327079 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCCACATCTCGATTGGCTAGATTCATAAGCGAAGCTTGCCCTCCCCAATTCGTCTCTGTAATGAGGCGCAGAAGCCCCAAAGTTCTAGACACCATTAACGAAGAAGATCACAGAGAAGCTCTCTCCTCCTCTTCCTCCTTGAAGATCGACAAATTCTCTGTTTCTTCGCTGCCGTCTACCATGGCTGCTTCGCCGCCGTCTCCTGCAACTTCCGCCGCCGTTAGTTCCAAATACTTTCTCAATCAGGTCCCCTTGAGGTCCTTCTCCCTTTTCGAGCACTGA

mRNA sequence

ATGGCAGCCACATCTCGATTGGCTAGATTCATAAGCGAAGCTTGCCCTCCCCAATTCGTCTCTGTAATGAGGCGCAGAAGCCCCAAAGTTCTAGACACCATTAACGAAGAAGATCACAGAGAAGCTCTCTCCTCCTCTTCCTCCTTGAAGATCGACAAATTCTCTGTTTCTTCGCTGCCGTCTACCATGGCTGCTTCGCCGCCGTCTCCTGCAACTTCCGCCGCCGTTAGTTCCAAATACTTTCTCAATCAGGTCCCCTTGAGGTCCTTCTCCCTTTTCGAGCACTGA

Coding sequence (CDS)

ATGGCAGCCACATCTCGATTGGCTAGATTCATAAGCGAAGCTTGCCCTCCCCAATTCGTCTCTGTAATGAGGCGCAGAAGCCCCAAAGTTCTAGACACCATTAACGAAGAAGATCACAGAGAAGCTCTCTCCTCCTCTTCCTCCTTGAAGATCGACAAATTCTCTGTTTCTTCGCTGCCGTCTACCATGGCTGCTTCGCCGCCGTCTCCTGCAACTTCCGCCGCCGTTAGTTCCAAATACTTTCTCAATCAGGTCCCCTTGAGGTCCTTCTCCCTTTTCGAGCACTGA
Homology
[Close]
BLAST of CmoCh13G005470 vs. TrEMBL
Match: A0A0A0LYE6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G534780 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 5.7e-26
Identity = 73/98 (74.49%), Postives = 81/98 (82.65%), Query Frame = 1 

Query: 1  MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHREALSSSSSLKIDKFSVSSLP 60
          MAATSRLARFISEACPPQFVSVMRRRSP+VLDTINEED REAL SSSS KIDKFSV    
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPRVLDTINEEDQREALVSSSSFKIDKFSV---- 60

Query: 61 STMAASPPSP-ATSAAVSSKYFLNQ--VPLRSFSLFEH 96
               SPPSP +++AA++SKYFL+Q  VPL  FS+FEH
Sbjct: 61 ----PSPPSPDSSAAAINSKYFLDQVPVPLGPFSIFEH 90

[Close]
BLAST of CmoCh13G005470 vs. TrEMBL
Match: M5WKN5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025370mg PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.6e-10
Identity = 53/99 (53.54%), Postives = 62/99 (62.63%), Query Frame = 1 

Query: 3  ATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDH------REALSSSSSLKIDKFSV 62
          A SRLARFI+E  PPQFVSVMR R+ KVLDTI EE+        ++L SSSS K    S 
Sbjct: 2  ANSRLARFITEVAPPQFVSVMRHRTSKVLDTIKEEEREYANTSNDSLISSSSSKGCACST 61

Query: 63 SSLPSTMAASPPSPATSAAVSSKYFLNQVPLRSFSLFEH 96
           S PS   AS  S A +A   SKYFL +V  R+FS+F H
Sbjct: 62 PSPPS--FASAASAAAAAGTESKYFLKEVH-RAFSMFGH 97

[Close]
BLAST of CmoCh13G005470 vs. TrEMBL
Match: V4SI34_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026858mg PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.8e-09
Identity = 46/94 (48.94%), Postives = 61/94 (64.89%), Query Frame = 1 

Query: 3  ATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHREALSSSSSLKIDKFSVSSLPST 62
          A SR+ARF  E  PPQFVSVMR R+PK+LDTI+EE+  + +S S +L   + S SS    
Sbjct: 2  ANSRMARFFMEVAPPQFVSVMRHRTPKMLDTISEEE--KDVSGSDALASTRRSFSS---- 61

Query: 63 MAASPPSPATSAAVSSKYFLNQVPL-RSFSLFEH 96
            +SP S   S A  SKYFL  V + ++FS+FE+
Sbjct: 62 -CSSPSSARASVASDSKYFLEGVQIQQNFSIFEN 88

[Close]
BLAST of CmoCh13G005470 vs. TrEMBL
Match: M1AS99_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG403011204 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.4e-08
Identity = 47/91 (51.65%), Postives = 63/91 (69.23%), Query Frame = 1 

Query: 3  ATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHREALSSSSSLKIDKFSVSSLPST 62
          A +R+ARF++E  PPQFV+VMR R+ K+L+TI EE+ REA S+S SL +  +S SS    
Sbjct: 2  ANARIARFVTEVAPPQFVNVMRNRASKMLETIKEEE-REA-STSESLSLKSYSPSS---- 61

Query: 63 MAASPPSPATSAAVSSKYFLNQVPLRSFSLF 94
             S  S ++S A SSKYFL +V  RSFS+F
Sbjct: 62 --CSAYSASSSNAKSSKYFLKEVQ-RSFSVF 83

[Close]
BLAST of CmoCh13G005470 vs. TrEMBL
Match: B9S0W8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0630180 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.3e-08
Identity = 48/93 (51.61%), Postives = 64/93 (68.82%), Query Frame = 1 

Query: 3  ATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHREALSSSSSLKIDKFSVSSLPST 62
          A SR+ARFI+E  PPQ++SV+RRR+ K+LDTINEE+    +S S+SL     S +S  ST
Sbjct: 2  ANSRIARFITEVAPPQYISVIRRRASKMLDTINEEE--RDVSPSNSLASAPTSPAS-AST 61

Query: 63 MAASPPSPATSAAVSSKYFLNQVPLRSFSLFEH 96
           AAS  S A   A +SKYF  +V  RSFS+F++
Sbjct: 62 NAAS-ASAAAPVATNSKYFPRRVQ-RSFSVFQN 89

[Close]
BLAST of CmoCh13G005470 vs. TAIR10
Match: AT1G30260.1 (AT1G30260.1 BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT4G21060.1))

HSP 1 Score: 60.1 bits (144), Expect = 8.7e-10
Identity = 43/97 (44.33%), Postives = 56/97 (57.73%), Query Frame = 1 

Query: 3  ATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHREALSSSSSLKIDKFSVSSLPST 62
          ATSRLARFI+E  PPQFV+VMRRR+ KVLDTI EE+      S      +   +SS P T
Sbjct: 2  ATSRLARFITEVAPPQFVTVMRRRTAKVLDTIKEEEREVGTDSIFPSSFNSKKISS-PFT 61

Query: 63 MAASPPSPATSAAVSSKYFLNQVPLR----SFSLFEH 96
             S    + SA+ S    LN+ P+     SF +F++
Sbjct: 62 SPYSSSVSSASASASCTSGLNKFPVTENRGSFPVFKN 97

[Close]
BLAST of CmoCh13G005470 vs. TAIR10
Match: AT4G21060.1 (AT4G21060.1 Galactosyltransferase family protein)

HSP 1 Score: 50.8 bits (120), Expect = 5.3e-07
Identity = 26/41 (63.41%), Postives = 33/41 (80.49%), Query Frame = 1 

Query: 3  ATSRLARFISEACPPQFVSVMRRR--SPKVLDTINEEDHRE 42
          ATSRLARF+SE  PPQFV+VMRR   + + LDTI EE+++E
Sbjct: 2  ATSRLARFVSEVAPPQFVTVMRRHRAAKQKLDTIKEEENKE 42

[Close]
BLAST of CmoCh13G005470 vs. NCBI nr
Match: gi|700210776|gb|KGN65872.1| (hypothetical protein Csa_1G534780 [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 8.1e-26
Identity = 73/98 (74.49%), Postives = 81/98 (82.65%), Query Frame = 1 

Query: 1  MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHREALSSSSSLKIDKFSVSSLP 60
          MAATSRLARFISEACPPQFVSVMRRRSP+VLDTINEED REAL SSSS KIDKFSV    
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPRVLDTINEEDQREALVSSSSFKIDKFSV---- 60

Query: 61 STMAASPPSP-ATSAAVSSKYFLNQ--VPLRSFSLFEH 96
               SPPSP +++AA++SKYFL+Q  VPL  FS+FEH
Sbjct: 61 ----PSPPSPDSSAAAINSKYFLDQVPVPLGPFSIFEH 90

[Close]
BLAST of CmoCh13G005470 vs. NCBI nr
Match: gi|645238218|ref|XP_008225574.1| (PREDICTED: uncharacterized protein LOC103325207 [Prunus mume])

HSP 1 Score: 75.9 bits (185), Expect = 4.3e-11
Identity = 53/100 (53.00%), Postives = 63/100 (63.00%), Query Frame = 1 

Query: 3  ATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHREALSSSSSLKIDKFSVSSLPST 62
          A SRLARFI+E  PPQFVSVMR R+ KVLDTINEE+   A +S+ SL      +SS PS 
Sbjct: 2  ANSRLARFITEVAPPQFVSVMRHRTSKVLDTINEEEREYANTSNDSL------ISSSPSK 61

Query: 63 MAA-------SPPSPATSAAVSSKYFLNQVPLRSFSLFEH 96
            A       S PS A +A   SKYFL +V  R+FS+F H
Sbjct: 62 GCACSTSSPPSFPSGAAAAGTDSKYFLKEVH-RAFSMFGH 94

[Close]
BLAST of CmoCh13G005470 vs. NCBI nr
Match: gi|595885448|ref|XP_007213158.1| (hypothetical protein PRUPE_ppa025370mg [Prunus persica])

HSP 1 Score: 72.8 bits (177), Expect = 3.7e-10
Identity = 53/99 (53.54%), Postives = 62/99 (62.63%), Query Frame = 1 

Query: 3  ATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDH------REALSSSSSLKIDKFSV 62
          A SRLARFI+E  PPQFVSVMR R+ KVLDTI EE+        ++L SSSS K    S 
Sbjct: 2  ANSRLARFITEVAPPQFVSVMRHRTSKVLDTIKEEEREYANTSNDSLISSSSSKGCACST 61

Query: 63 SSLPSTMAASPPSPATSAAVSSKYFLNQVPLRSFSLFEH 96
           S PS   AS  S A +A   SKYFL +V  R+FS+F H
Sbjct: 62 PSPPS--FASAASAAAAAGTESKYFLKEVH-RAFSMFGH 97

[Close]
BLAST of CmoCh13G005470 vs. NCBI nr
Match: gi|658056873|ref|XP_008364195.1| (PREDICTED: uncharacterized protein LOC103427887 [Malus domestica])

HSP 1 Score: 68.9 bits (167), Expect = 5.3e-09
Identity = 50/100 (50.00%), Postives = 60/100 (60.00%), Query Frame = 1 

Query: 3   ATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHREA-------LSSSSSLKIDKFS 62
           A SRLARF++E  PPQFVSVMR R+ KVLDTI EE+   A        SSSS+      S
Sbjct: 2   ANSRLARFVTEVAPPQFVSVMRHRTSKVLDTIYEEERENAHXPNDSLTSSSSNGFAHSSS 61

Query: 63  VSSLPSTMAASPPSPATSAAVSSKYFLNQVPLRSFSLFEH 96
            SSL S  +    + A+SA   SKYFL +V  RS S+F H
Sbjct: 62  SSSLXSPSSLPSFASASSARAESKYFLRKV-RRSLSVFGH 100

[Close]
BLAST of CmoCh13G005470 vs. NCBI nr
Match: gi|567868821|ref|XP_006427032.1| (hypothetical protein CICLE_v10026858mg [Citrus clementina])

HSP 1 Score: 68.6 bits (166), Expect = 6.9e-09
Identity = 46/94 (48.94%), Postives = 61/94 (64.89%), Query Frame = 1 

Query: 3  ATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHREALSSSSSLKIDKFSVSSLPST 62
          A SR+ARF  E  PPQFVSVMR R+PK+LDTI+EE+  + +S S +L   + S SS    
Sbjct: 2  ANSRMARFFMEVAPPQFVSVMRHRTPKMLDTISEEE--KDVSGSDALASTRRSFSS---- 61

Query: 63 MAASPPSPATSAAVSSKYFLNQVPL-RSFSLFEH 96
            +SP S   S A  SKYFL  V + ++FS+FE+
Sbjct: 62 -CSSPSSARASVASDSKYFLEGVQIQQNFSIFEN 88

The following BLAST results are available for this feature:
BLAST of CmoCh13G005470 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh13G005470 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYE6_CUCSA5.7e-2674.49Uncharacterized protein OS=Cucumis sativus GN=Csa_1G534780 PE=4 SV=1[more]
M5WKN5_PRUPE2.6e-1053.54Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025370mg PE=4 SV=1[more]
V4SI34_9ROSI4.8e-0948.94Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026858mg PE=4 SV=1[more]
M1AS99_SOLTU1.4e-0851.65Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG403011204 PE=4 SV=1[more]
B9S0W8_RICCO5.3e-0851.61Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0630180 PE=4 SV=1[more]
BLAST of CmoCh13G005470 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G30260.18.7e-1044.33 BEST Arabidopsis thaliana protein match is: Galactosyltransferase fa... [more]
AT4G21060.15.3e-0763.41 Galactosyltransferase family protein[more]
BLAST of CmoCh13G005470 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210776|gb|KGN65872.1|8.1e-2674.49hypothetical protein Csa_1G534780 [Cucumis sativus][more]
gi|645238218|ref|XP_008225574.1|4.3e-1153.00PREDICTED: uncharacterized protein LOC103325207 [Prunus mume][more]
gi|595885448|ref|XP_007213158.1|3.7e-1053.54hypothetical protein PRUPE_ppa025370mg [Prunus persica][more]
gi|658056873|ref|XP_008364195.1|5.3e-0950.00PREDICTED: uncharacterized protein LOC103427887 [Malus domestica][more]
gi|567868821|ref|XP_006427032.1|6.9e-0948.94hypothetical protein CICLE_v10026858mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G005470.1CmoCh13G005470.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35101FAMILY NOT NAMEDcoord: 3..66
score: 2.9
NoneNo IPR availablePANTHERPTHR35101:SF1SUBFAMILY NOT NAMEDcoord: 3..66
score: 2.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh13G005470Cucsa.152100Cucumber (Gy14) v1cgycmoB0419
CmoCh13G005470CmaCh13G005170Cucurbita maxima (Rimu)cmacmoB218
CmoCh13G005470CmaCh18G004870Cucurbita maxima (Rimu)cmacmoB398
CmoCh13G005470Cla019557Watermelon (97103) v1cmowmB174
CmoCh13G005470Csa1G534780Cucumber (Chinese Long) v2cmocuB205
CmoCh13G005470MELO3C002763Melon (DHL92) v3.5.1cmomeB179
CmoCh13G005470ClCG03G006550Watermelon (Charleston Gray)cmowcgB185
CmoCh13G005470CSPI01G24530Wild cucumber (PI 183967)cmocpiB207
CmoCh13G005470Lsi02G009150Bottle gourd (USVL1VR-Ls)cmolsiB197
CmoCh13G005470Cp4.1LG20g05340Cucurbita pepo (Zucchini)cmocpeB201
CmoCh13G005470MELO3C002763.2Melon (DHL92) v3.6.1cmomedB201
CmoCh13G005470CsaV3_1G036810Cucumber (Chinese Long) v3cmocucB0237
CmoCh13G005470CsaV3_6G051960Cucumber (Chinese Long) v3cmocucB0254
CmoCh13G005470Cla97C03G057830Watermelon (97103) v2cmowmbB210
CmoCh13G005470Bhi08G001659Wax gourdcmowgoB0244
CmoCh13G005470Carg25449Silver-seed gourdcarcmoB0290
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh13G005470CmoCh18G004630Cucurbita moschata (Rifu)cmocmoB170
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh13G005470Watermelon (97103) v2cmowmbB196
CmoCh13G005470Wax gourdcmowgoB0241
CmoCh13G005470Cucurbita moschata (Rifu)cmocmoB183
CmoCh13G005470Cucurbita moschata (Rifu)cmocmoB190
CmoCh13G005470Cucumber (Gy14) v1cgycmoB0033
CmoCh13G005470Cucurbita maxima (Rimu)cmacmoB638
CmoCh13G005470Cucurbita maxima (Rimu)cmacmoB847
CmoCh13G005470Wild cucumber (PI 183967)cmocpiB218
CmoCh13G005470Cucumber (Chinese Long) v2cmocuB215
CmoCh13G005470Melon (DHL92) v3.5.1cmomeB195
CmoCh13G005470Watermelon (Charleston Gray)cmowcgB176
CmoCh13G005470Watermelon (97103) v1cmowmB188
CmoCh13G005470Cucurbita pepo (Zucchini)cmocpeB182
CmoCh13G005470Cucurbita pepo (Zucchini)cmocpeB186
CmoCh13G005470Cucurbita pepo (Zucchini)cmocpeB199
CmoCh13G005470Bottle gourd (USVL1VR-Ls)cmolsiB189
CmoCh13G005470Cucumber (Gy14) v2cgybcmoB070
CmoCh13G005470Cucumber (Gy14) v2cgybcmoB708
CmoCh13G005470Melon (DHL92) v3.6.1cmomedB217
CmoCh13G005470Silver-seed gourdcarcmoB0406
CmoCh13G005470Silver-seed gourdcarcmoB0569
CmoCh13G005470Silver-seed gourdcarcmoB0993