CSPI01G24530 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G24530
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	BEST Arabidopsis thaliana protein match is: Galact s in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Location	Chr1 : 19834734 .. 19835415 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAACCAAAAATCCTCTTCCACAAAAACAGAAATCGTATTGCCTTCTTCGTAATCCTCTTCATTCAACATTCGAAACCCTAAATTTCATAAAGATGGCAGCCACTTCTCGATTGGCCAGGTTTATCAGCGAAGCTTGCCCACCTCAATTCGTCTCTGTCATGAGGCGAAGAAGCCCCAAAGTTTTAGACACCATTAACGAAGAAGACCAAAGAGAAGCCTTAGTTTCCTCTTCCCACTTCAAGATCGACAAATTCTCTGTTCCTTCACCGCCATCTCCCGATTCTTCCGCTGCCGCCATTAATTCCAAATACTTTCTCGATCAGGTCCCTGTACCCCTGGGGCCTTTCTCCATTTTCGAGCATTGAGAAATGGATTTTTAGTTTCGATGAGTACACTCAGAATCCGTTTCTTTTTTCCTTTTTACCTTTTCTGCGCCCATCGGGTCGGATTCATTCTGGCCGGAAATGGCGTTGTAGATATGAAGTCGACGACGTAGTGGCTGACGCCGGTTAAGAGATGGGTTTTTTCTTTGGTTTTTTTTCTCTTTTTTTTTTGATGGGGTTAGTGAATTTCCGAATGCGTTTGTAATGTGTGAGTTTGATGTTTATATAAAATGAAAAAACTGCGCTGCCCTTCTAATAATTAACTTTTCAGCTAATCCTCAAAATCATAAATAACAAT

mRNA sequence

ATGGCAGCCACTTCTCGATTGGCCAGGTTTATCAGCGAAGCTTGCCCACCTCAATTCGTCTCTGTCATGAGGCGAAGAAGCCCCAAAGTTTTAGACACCATTAACGAAGAAGACCAAAGAGAAGCCTTAGTTTCCTCTTCCCACTTCAAGATCGACAAATTCTCTGTTCCTTCACCGCCATCTCCCGATTCTTCCGCTGCCGCCATTAATTCCAAATACTTTCTCGATCAGGTCCCTGTACCCCTGGGGCCTTTCTCCATTTTCGAGCATTGA

Coding sequence (CDS)

ATGGCAGCCACTTCTCGATTGGCCAGGTTTATCAGCGAAGCTTGCCCACCTCAATTCGTCTCTGTCATGAGGCGAAGAAGCCCCAAAGTTTTAGACACCATTAACGAAGAAGACCAAAGAGAAGCCTTAGTTTCCTCTTCCCACTTCAAGATCGACAAATTCTCTGTTCCTTCACCGCCATCTCCCGATTCTTCCGCTGCCGCCATTAATTCCAAATACTTTCTCGATCAGGTCCCTGTACCCCTGGGGCCTTTCTCCATTTTCGAGCATTGA

Homology

[Close]

BLAST of CSPI01G24530 vs. TrEMBL
Match: A0A0A0LYE6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G534780 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 4.6e-41
Identity = 88/90 (97.78%), Postives = 89/90 (98.89%), Query Frame = 1


Query: 1  MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDQREALVSSSHFKIDKFSVPSPP 60
          MAATSRLARFISEACPPQFVSVMRRRSP+VLDTINEEDQREALVSSS FKIDKFSVPSPP
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPRVLDTINEEDQREALVSSSSFKIDKFSVPSPP 60

Query: 61 SPDSSAAAINSKYFLDQVPVPLGPFSIFEH 91
          SPDSSAAAINSKYFLDQVPVPLGPFSIFEH
Sbjct: 61 SPDSSAAAINSKYFLDQVPVPLGPFSIFEH 90

[Close]

BLAST of CSPI01G24530 vs. TrEMBL
Match: M5WKN5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025370mg PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.7e-11
Identity = 51/99 (51.52%), Postives = 62/99 (62.63%), Query Frame = 1


Query: 3  ATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDQ------REALVSSSHFKIDKFSV 62
          A SRLARFI+E  PPQFVSVMR R+ KVLDTI EE++       ++L+SSS  K    S 
Sbjct: 2  ANSRLARFITEVAPPQFVSVMRHRTSKVLDTIKEEEREYANTSNDSLISSSSSKGCACST 61

Query: 63 PSPPSPDSSAAA-----INSKYFLDQVPVPLGPFSIFEH 91
          PSPPS  S+A+A       SKYFL +V      FS+F H
Sbjct: 62 PSPPSFASAASAAAAAGTESKYFLKEVH---RAFSMFGH 97

[Close]

BLAST of CSPI01G24530 vs. TrEMBL
Match: M1AJ74_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400009263 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.4e-10
Identity = 43/76 (56.58%), Postives = 53/76 (69.74%), Query Frame = 1


Query: 3  ATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDQREALVSSSHFKIDKFSVPSPPSP 62
          A +R+ARF++E  PPQF++VMR R+ K+LDTINEE +REA  S   F   K S PS  S 
Sbjct: 2  ANARIARFVTEVAPPQFINVMRHRASKMLDTINEE-EREATKSELLFL--KSSSPSSSSS 61

Query: 63 DSSAAAINSKYFLDQV 79
           SS+ A NSKYFL QV
Sbjct: 62 SSSSNANNSKYFLKQV 74

[Close]

BLAST of CSPI01G24530 vs. TrEMBL
Match: V4SI34_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026858mg PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.2e-10
Identity = 45/92 (48.91%), Postives = 59/92 (64.13%), Query Frame = 1


Query: 3  ATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDQ----REALVSSSHFKIDKFSVPS 62
          A SR+ARF  E  PPQFVSVMR R+PK+LDTI+EE++     +AL S+       FS  S
Sbjct: 2  ANSRMARFFMEVAPPQFVSVMRHRTPKMLDTISEEEKDVSGSDALASTRR----SFSSCS 61

Query: 63 PPSPDSSAAAINSKYFLDQVPVPLGPFSIFEH 91
           PS   ++ A +SKYFL+ V +    FSIFE+
Sbjct: 62 SPSSARASVASDSKYFLEGVQIQQN-FSIFEN 88

[Close]

BLAST of CSPI01G24530 vs. TrEMBL
Match: K4D737_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.6e-09
Identity = 43/76 (56.58%), Postives = 53/76 (69.74%), Query Frame = 1


Query: 3  ATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDQREALVSSSHFKIDKFSVPSPPSP 62
          A +R+ARF++E  PPQFV+VMR R+ K+LDTINEE +REA  S   F +  F   SP S 
Sbjct: 2  ANARIARFVTEVAPPQFVNVMRHRASKMLDTINEE-EREASKSELIF-LKSF---SPSSS 61

Query: 63 DSSAAAINSKYFLDQV 79
           SS+ A NSKYFL QV
Sbjct: 62 SSSSNANNSKYFLKQV 72

[Close]

BLAST of CSPI01G24530 vs. TAIR10
Match: AT1G30260.1 (AT1G30260.1 BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT4G21060.1))

HSP 1 Score: 63.9 bits (154), Expect = 5.8e-11
Identity = 42/96 (43.75%), Postives = 58/96 (60.42%), Query Frame = 1


Query: 3  ATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDQREAL--VSSSHFKIDK----FSV 62
          ATSRLARFI+E  PPQFV+VMRRR+ KVLDTI EE++      +  S F   K    F+ 
Sbjct: 2  ATSRLARFITEVAPPQFVTVMRRRTAKVLDTIKEEEREVGTDSIFPSSFNSKKISSPFTS 61

Query: 63 PSPPSPDSSAAAINSKYFLDQVPVP--LGPFSIFEH 91
          P   S  S++A+ +    L++ PV    G F +F++
Sbjct: 62 PYSSSVSSASASASCTSGLNKFPVTENRGSFPVFKN 97

[Close]

BLAST of CSPI01G24530 vs. TAIR10
Match: AT4G21060.1 (AT4G21060.1 Galactosyltransferase family protein)

HSP 1 Score: 50.4 bits (119), Expect = 6.6e-07
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 1


Query: 3  ATSRLARFISEACPPQFVSVMRRR--SPKVLDTINEEDQRE 42
          ATSRLARF+SE  PPQFV+VMRR   + + LDTI EE+ +E
Sbjct: 2  ATSRLARFVSEVAPPQFVTVMRRHRAAKQKLDTIKEEENKE 42

[Close]

BLAST of CSPI01G24530 vs. NCBI nr
Match: gi|700210776|gb|KGN65872.1| (hypothetical protein Csa_1G534780 [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 6.6e-41
Identity = 88/90 (97.78%), Postives = 89/90 (98.89%), Query Frame = 1


Query: 1  MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDQREALVSSSHFKIDKFSVPSPP 60
          MAATSRLARFISEACPPQFVSVMRRRSP+VLDTINEEDQREALVSSS FKIDKFSVPSPP
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPRVLDTINEEDQREALVSSSSFKIDKFSVPSPP 60

Query: 61 SPDSSAAAINSKYFLDQVPVPLGPFSIFEH 91
          SPDSSAAAINSKYFLDQVPVPLGPFSIFEH
Sbjct: 61 SPDSSAAAINSKYFLDQVPVPLGPFSIFEH 90

[Close]

BLAST of CSPI01G24530 vs. NCBI nr
Match: gi|645238218|ref|XP_008225574.1| (PREDICTED: uncharacterized protein LOC103325207 [Prunus mume])

HSP 1 Score: 78.2 bits (191), Expect = 8.4e-12
Identity = 52/96 (54.17%), Postives = 62/96 (64.58%), Query Frame = 1


Query: 3  ATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDQ------REALVSSSHFKIDKFSV 62
          A SRLARFI+E  PPQFVSVMR R+ KVLDTINEE++       ++L+SSS  K    S 
Sbjct: 2  ANSRLARFITEVAPPQFVSVMRHRTSKVLDTINEEEREYANTSNDSLISSSPSKGCACST 61

Query: 63 PSPPSPDSSAAA--INSKYFLDQVPVPLGPFSIFEH 91
           SPPS  S AAA   +SKYFL +V      FS+F H
Sbjct: 62 SSPPSFPSGAAAAGTDSKYFLKEVH---RAFSMFGH 94

[Close]

BLAST of CSPI01G24530 vs. NCBI nr
Match: gi|595885448|ref|XP_007213158.1| (hypothetical protein PRUPE_ppa025370mg [Prunus persica])

HSP 1 Score: 76.6 bits (187), Expect = 2.4e-11
Identity = 51/99 (51.52%), Postives = 62/99 (62.63%), Query Frame = 1


Query: 3  ATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDQ------REALVSSSHFKIDKFSV 62
          A SRLARFI+E  PPQFVSVMR R+ KVLDTI EE++       ++L+SSS  K    S 
Sbjct: 2  ANSRLARFITEVAPPQFVSVMRHRTSKVLDTIKEEEREYANTSNDSLISSSSSKGCACST 61

Query: 63 PSPPSPDSSAAA-----INSKYFLDQVPVPLGPFSIFEH 91
          PSPPS  S+A+A       SKYFL +V      FS+F H
Sbjct: 62 PSPPSFASAASAAAAAGTESKYFLKEVH---RAFSMFGH 97

[Close]

BLAST of CSPI01G24530 vs. NCBI nr
Match: gi|567868821|ref|XP_006427032.1| (hypothetical protein CICLE_v10026858mg [Citrus clementina])

HSP 1 Score: 72.4 bits (176), Expect = 4.6e-10
Identity = 45/92 (48.91%), Postives = 59/92 (64.13%), Query Frame = 1


Query: 3  ATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDQ----REALVSSSHFKIDKFSVPS 62
          A SR+ARF  E  PPQFVSVMR R+PK+LDTI+EE++     +AL S+       FS  S
Sbjct: 2  ANSRMARFFMEVAPPQFVSVMRHRTPKMLDTISEEEKDVSGSDALASTRR----SFSSCS 61

Query: 63 PPSPDSSAAAINSKYFLDQVPVPLGPFSIFEH 91
           PS   ++ A +SKYFL+ V +    FSIFE+
Sbjct: 62 SPSSARASVASDSKYFLEGVQIQQN-FSIFEN 88

[Close]

BLAST of CSPI01G24530 vs. NCBI nr
Match: gi|567868817|ref|XP_006427030.1| (hypothetical protein CICLE_v10026747mg [Citrus clementina])

HSP 1 Score: 67.4 bits (163), Expect = 1.5e-08
Identity = 40/82 (48.78%), Postives = 53/82 (64.63%), Query Frame = 1


Query: 3   ATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDQ----REALVSSSHFKIDKFSVPS 62
           A SR+A+F+ E  PPQFVSVMR R+ K+LDTI+EE++     +AL S+       FS  S
Sbjct: 46  ANSRIAKFVMEVAPPQFVSVMRHRTAKMLDTISEEEKDVSGSDALASTPR----SFSSCS 105

Query: 63  PPSPDSSAAAINSKYFLDQVPV 81
            PS  S+  A +SKYFL  VP+
Sbjct: 106 TPSSASAVVASDSKYFLRGVPI 123

The following BLAST results are available for this feature:

BLAST of CSPI01G24530 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G24530 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYE6_CUCSA	4.6e-41	97.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G534780 PE=4 SV=1	[more]
M5WKN5_PRUPE	1.7e-11	51.52	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025370mg PE=4 SV=1	[more]
M1AJ74_SOLTU	2.4e-10	56.58	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400009263 PE=4 SV=1	[more]
V4SI34_9ROSI	3.2e-10	48.91	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026858mg PE=4 SV=1	[more]
K4D737_SOLLC	1.6e-09	56.58	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]

BLAST of CSPI01G24530 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G30260.1	5.8e-11	43.75	BEST Arabidopsis thaliana protein match is: Galactosyltransferase fa...	[more]
AT4G21060.1	6.6e-07	63.41	Galactosyltransferase family protein	[more]

BLAST of CSPI01G24530 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210776\|gb\|KGN65872.1\|	6.6e-41	97.78	hypothetical protein Csa_1G534780 [Cucumis sativus]	[more]
gi\|645238218\|ref\|XP_008225574.1\|	8.4e-12	54.17	PREDICTED: uncharacterized protein LOC103325207 [Prunus mume]	[more]
gi\|595885448\|ref\|XP_007213158.1\|	2.4e-11	51.52	hypothetical protein PRUPE_ppa025370mg [Prunus persica]	[more]
gi\|567868821\|ref\|XP_006427032.1\|	4.6e-10	48.91	hypothetical protein CICLE_v10026858mg [Citrus clementina]	[more]
gi\|567868817\|ref\|XP_006427030.1\|	1.5e-08	48.78	hypothetical protein CICLE_v10026747mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G24530.1	CSPI01G24530.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35101	FAMILY NOT NAMED	coord: 3..90 score: 1.0
None	No IPR available	PANTHER	PTHR35101:SF1	SUBFAMILY NOT NAMED	coord: 3..90 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G24530	Cla019557	Watermelon (97103) v1	cpiwmB027
CSPI01G24530	Csa1G534780	Cucumber (Chinese Long) v2	cpicuB001
CSPI01G24530	MELO3C002763	Melon (DHL92) v3.5.1	cpimeB027
CSPI01G24530	ClCG03G006550	Watermelon (Charleston Gray)	cpiwcgB052
CSPI01G24530	Lsi02G009150	Bottle gourd (USVL1VR-Ls)	cpilsiB022
CSPI01G24530	MELO3C002763.2	Melon (DHL92) v3.6.1	cpimedB026
CSPI01G24530	CsaV3_1G036810	Cucumber (Chinese Long) v3	cpicucB000
CSPI01G24530	Cla97C03G057830	Watermelon (97103) v2	cpiwmbB047
CSPI01G24530	Bhi08G001659	Wax gourd	cpiwgoB055
CSPI01G24530	Cucsa.152100	Cucumber (Gy14) v1	cgycpiB224
CSPI01G24530	CmaCh18G004870	Cucurbita maxima (Rimu)	cmacpiB396
CSPI01G24530	CmaCh13G005170	Cucurbita maxima (Rimu)	cmacpiB221
CSPI01G24530	CmoCh18G004630	Cucurbita moschata (Rifu)	cmocpiB384
CSPI01G24530	CmoCh13G005470	Cucurbita moschata (Rifu)	cmocpiB207
CSPI01G24530	Cp4.1LG20g05340	Cucurbita pepo (Zucchini)	cpecpiB508
CSPI01G24530	Carg25449	Silver-seed gourd	carcpiB0238

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G24530	Cucurbita maxima (Rimu)	cmacpiB210
CSPI01G24530	Cucurbita moschata (Rifu)	cmocpiB198
CSPI01G24530	Cucurbita pepo (Zucchini)	cpecpiB026
CSPI01G24530	Bottle gourd (USVL1VR-Ls)	cpilsiB036
CSPI01G24530	Melon (DHL92) v3.6.1	cpimedB015
CSPI01G24530	Cucumber (Gy14) v2	cgybcpiB002
CSPI01G24530	Silver-seed gourd	carcpiB0432
CSPI01G24530	Silver-seed gourd	carcpiB0458
CSPI01G24530	Wax gourd	cpiwgoB040