CSPI01G24530.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G24530.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	BEST Arabidopsis thaliana protein match is: Galact s in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Location	Chr1 : 19834734 .. 19835415 (+)
Sequence length	273

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAACCAAAAATCCTCTTCCACAAAAACAGAAATCGTATTGCCTTCTTCGTAATCCTCTTCATTCAACATTCGAAACCCTAAATTTCATAAAGATGGCAGCCACTTCTCGATTGGCCAGGTTTATCAGCGAAGCTTGCCCACCTCAATTCGTCTCTGTCATGAGGCGAAGAAGCCCCAAAGTTTTAGACACCATTAACGAAGAAGACCAAAGAGAAGCCTTAGTTTCCTCTTCCCACTTCAAGATCGACAAATTCTCTGTTCCTTCACCGCCATCTCCCGATTCTTCCGCTGCCGCCATTAATTCCAAATACTTTCTCGATCAGGTCCCTGTACCCCTGGGGCCTTTCTCCATTTTCGAGCATTGAGAAATGGATTTTTAGTTTCGATGAGTACACTCAGAATCCGTTTCTTTTTTCCTTTTTACCTTTTCTGCGCCCATCGGGTCGGATTCATTCTGGCCGGAAATGGCGTTGTAGATATGAAGTCGACGACGTAGTGGCTGACGCCGGTTAAGAGATGGGTTTTTTCTTTGGTTTTTTTTCTCTTTTTTTTTTGATGGGGTTAGTGAATTTCCGAATGCGTTTGTAATGTGTGAGTTTGATGTTTATATAAAATGAAAAAACTGCGCTGCCCTTCTAATAATTAACTTTTCAGCTAATCCTCAAAATCATAAATAACAAT

mRNA sequence

ATGGCAGCCACTTCTCGATTGGCCAGGTTTATCAGCGAAGCTTGCCCACCTCAATTCGTCTCTGTCATGAGGCGAAGAAGCCCCAAAGTTTTAGACACCATTAACGAAGAAGACCAAAGAGAAGCCTTAGTTTCCTCTTCCCACTTCAAGATCGACAAATTCTCTGTTCCTTCACCGCCATCTCCCGATTCTTCCGCTGCCGCCATTAATTCCAAATACTTTCTCGATCAGGTCCCTGTACCCCTGGGGCCTTTCTCCATTTTCGAGCATTGA

Coding sequence (CDS)

ATGGCAGCCACTTCTCGATTGGCCAGGTTTATCAGCGAAGCTTGCCCACCTCAATTCGTCTCTGTCATGAGGCGAAGAAGCCCCAAAGTTTTAGACACCATTAACGAAGAAGACCAAAGAGAAGCCTTAGTTTCCTCTTCCCACTTCAAGATCGACAAATTCTCTGTTCCTTCACCGCCATCTCCCGATTCTTCCGCTGCCGCCATTAATTCCAAATACTTTCTCGATCAGGTCCCTGTACCCCTGGGGCCTTTCTCCATTTTCGAGCATTGA

Homology

[Close]

BLAST of CSPI01G24530.1 vs. TrEMBL
Match: A0A0A0LYE6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G534780 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 4.6e-41
Identity = 88/90 (97.78%), Postives = 89/90 (98.89%), Query Frame = 1


Query: 1  MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDQREALVSSSHFKIDKFSVPSPP 60
          MAATSRLARFISEACPPQFVSVMRRRSP+VLDTINEEDQREALVSSS FKIDKFSVPSPP
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPRVLDTINEEDQREALVSSSSFKIDKFSVPSPP 60

Query: 61 SPDSSAAAINSKYFLDQVPVPLGPFSIFEH 91
          SPDSSAAAINSKYFLDQVPVPLGPFSIFEH
Sbjct: 61 SPDSSAAAINSKYFLDQVPVPLGPFSIFEH 90

[Close]

BLAST of CSPI01G24530.1 vs. TrEMBL
Match: M5WKN5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025370mg PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.7e-11
Identity = 51/99 (51.52%), Postives = 62/99 (62.63%), Query Frame = 1


Query: 3  ATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDQ------REALVSSSHFKIDKFSV 62
          A SRLARFI+E  PPQFVSVMR R+ KVLDTI EE++       ++L+SSS  K    S 
Sbjct: 2  ANSRLARFITEVAPPQFVSVMRHRTSKVLDTIKEEEREYANTSNDSLISSSSSKGCACST 61

Query: 63 PSPPSPDSSAAA-----INSKYFLDQVPVPLGPFSIFEH 91
          PSPPS  S+A+A       SKYFL +V      FS+F H
Sbjct: 62 PSPPSFASAASAAAAAGTESKYFLKEVH---RAFSMFGH 97

[Close]

BLAST of CSPI01G24530.1 vs. TrEMBL
Match: M1AJ74_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400009263 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.4e-10
Identity = 43/76 (56.58%), Postives = 53/76 (69.74%), Query Frame = 1


Query: 3  ATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDQREALVSSSHFKIDKFSVPSPPSP 62
          A +R+ARF++E  PPQF++VMR R+ K+LDTINEE +REA  S   F   K S PS  S 
Sbjct: 2  ANARIARFVTEVAPPQFINVMRHRASKMLDTINEE-EREATKSELLFL--KSSSPSSSSS 61

Query: 63 DSSAAAINSKYFLDQV 79
           SS+ A NSKYFL QV
Sbjct: 62 SSSSNANNSKYFLKQV 74

[Close]

BLAST of CSPI01G24530.1 vs. TrEMBL
Match: V4SI34_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026858mg PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.2e-10
Identity = 45/92 (48.91%), Postives = 59/92 (64.13%), Query Frame = 1


Query: 3  ATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDQ----REALVSSSHFKIDKFSVPS 62
          A SR+ARF  E  PPQFVSVMR R+PK+LDTI+EE++     +AL S+       FS  S
Sbjct: 2  ANSRMARFFMEVAPPQFVSVMRHRTPKMLDTISEEEKDVSGSDALASTRR----SFSSCS 61

Query: 63 PPSPDSSAAAINSKYFLDQVPVPLGPFSIFEH 91
           PS   ++ A +SKYFL+ V +    FSIFE+
Sbjct: 62 SPSSARASVASDSKYFLEGVQIQQN-FSIFEN 88

[Close]

BLAST of CSPI01G24530.1 vs. TrEMBL
Match: K4D737_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.6e-09
Identity = 43/76 (56.58%), Postives = 53/76 (69.74%), Query Frame = 1


Query: 3  ATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDQREALVSSSHFKIDKFSVPSPPSP 62
          A +R+ARF++E  PPQFV+VMR R+ K+LDTINEE +REA  S   F +  F   SP S 
Sbjct: 2  ANARIARFVTEVAPPQFVNVMRHRASKMLDTINEE-EREASKSELIF-LKSF---SPSSS 61

Query: 63 DSSAAAINSKYFLDQV 79
           SS+ A NSKYFL QV
Sbjct: 62 SSSSNANNSKYFLKQV 72

[Close]

BLAST of CSPI01G24530.1 vs. TAIR10
Match: AT1G30260.1 (AT1G30260.1 BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT4G21060.1))

HSP 1 Score: 63.9 bits (154), Expect = 5.8e-11
Identity = 42/96 (43.75%), Postives = 58/96 (60.42%), Query Frame = 1


Query: 3  ATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDQREAL--VSSSHFKIDK----FSV 62
          ATSRLARFI+E  PPQFV+VMRRR+ KVLDTI EE++      +  S F   K    F+ 
Sbjct: 2  ATSRLARFITEVAPPQFVTVMRRRTAKVLDTIKEEEREVGTDSIFPSSFNSKKISSPFTS 61

Query: 63 PSPPSPDSSAAAINSKYFLDQVPVP--LGPFSIFEH 91
          P   S  S++A+ +    L++ PV    G F +F++
Sbjct: 62 PYSSSVSSASASASCTSGLNKFPVTENRGSFPVFKN 97

[Close]

BLAST of CSPI01G24530.1 vs. TAIR10
Match: AT4G21060.1 (AT4G21060.1 Galactosyltransferase family protein)

HSP 1 Score: 50.4 bits (119), Expect = 6.6e-07
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 1


Query: 3  ATSRLARFISEACPPQFVSVMRRR--SPKVLDTINEEDQRE 42
          ATSRLARF+SE  PPQFV+VMRR   + + LDTI EE+ +E
Sbjct: 2  ATSRLARFVSEVAPPQFVTVMRRHRAAKQKLDTIKEEENKE 42

[Close]

BLAST of CSPI01G24530.1 vs. NCBI nr
Match: gi|700210776|gb|KGN65872.1| (hypothetical protein Csa_1G534780 [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 6.6e-41
Identity = 88/90 (97.78%), Postives = 89/90 (98.89%), Query Frame = 1


Query: 1  MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDQREALVSSSHFKIDKFSVPSPP 60
          MAATSRLARFISEACPPQFVSVMRRRSP+VLDTINEEDQREALVSSS FKIDKFSVPSPP
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPRVLDTINEEDQREALVSSSSFKIDKFSVPSPP 60

Query: 61 SPDSSAAAINSKYFLDQVPVPLGPFSIFEH 91
          SPDSSAAAINSKYFLDQVPVPLGPFSIFEH
Sbjct: 61 SPDSSAAAINSKYFLDQVPVPLGPFSIFEH 90

[Close]

BLAST of CSPI01G24530.1 vs. NCBI nr
Match: gi|645238218|ref|XP_008225574.1| (PREDICTED: uncharacterized protein LOC103325207 [Prunus mume])

HSP 1 Score: 78.2 bits (191), Expect = 8.4e-12
Identity = 52/96 (54.17%), Postives = 62/96 (64.58%), Query Frame = 1


Query: 3  ATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDQ------REALVSSSHFKIDKFSV 62
          A SRLARFI+E  PPQFVSVMR R+ KVLDTINEE++       ++L+SSS  K    S 
Sbjct: 2  ANSRLARFITEVAPPQFVSVMRHRTSKVLDTINEEEREYANTSNDSLISSSPSKGCACST 61

Query: 63 PSPPSPDSSAAA--INSKYFLDQVPVPLGPFSIFEH 91
           SPPS  S AAA   +SKYFL +V      FS+F H
Sbjct: 62 SSPPSFPSGAAAAGTDSKYFLKEVH---RAFSMFGH 94

[Close]

BLAST of CSPI01G24530.1 vs. NCBI nr
Match: gi|595885448|ref|XP_007213158.1| (hypothetical protein PRUPE_ppa025370mg [Prunus persica])

HSP 1 Score: 76.6 bits (187), Expect = 2.4e-11
Identity = 51/99 (51.52%), Postives = 62/99 (62.63%), Query Frame = 1


Query: 3  ATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDQ------REALVSSSHFKIDKFSV 62
          A SRLARFI+E  PPQFVSVMR R+ KVLDTI EE++       ++L+SSS  K    S 
Sbjct: 2  ANSRLARFITEVAPPQFVSVMRHRTSKVLDTIKEEEREYANTSNDSLISSSSSKGCACST 61

Query: 63 PSPPSPDSSAAA-----INSKYFLDQVPVPLGPFSIFEH 91
          PSPPS  S+A+A       SKYFL +V      FS+F H
Sbjct: 62 PSPPSFASAASAAAAAGTESKYFLKEVH---RAFSMFGH 97

[Close]

BLAST of CSPI01G24530.1 vs. NCBI nr
Match: gi|567868821|ref|XP_006427032.1| (hypothetical protein CICLE_v10026858mg [Citrus clementina])

HSP 1 Score: 72.4 bits (176), Expect = 4.6e-10
Identity = 45/92 (48.91%), Postives = 59/92 (64.13%), Query Frame = 1


Query: 3  ATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDQ----REALVSSSHFKIDKFSVPS 62
          A SR+ARF  E  PPQFVSVMR R+PK+LDTI+EE++     +AL S+       FS  S
Sbjct: 2  ANSRMARFFMEVAPPQFVSVMRHRTPKMLDTISEEEKDVSGSDALASTRR----SFSSCS 61

Query: 63 PPSPDSSAAAINSKYFLDQVPVPLGPFSIFEH 91
           PS   ++ A +SKYFL+ V +    FSIFE+
Sbjct: 62 SPSSARASVASDSKYFLEGVQIQQN-FSIFEN 88

[Close]

BLAST of CSPI01G24530.1 vs. NCBI nr
Match: gi|567868817|ref|XP_006427030.1| (hypothetical protein CICLE_v10026747mg [Citrus clementina])

HSP 1 Score: 67.4 bits (163), Expect = 1.5e-08
Identity = 40/82 (48.78%), Postives = 53/82 (64.63%), Query Frame = 1


Query: 3   ATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDQ----REALVSSSHFKIDKFSVPS 62
           A SR+A+F+ E  PPQFVSVMR R+ K+LDTI+EE++     +AL S+       FS  S
Sbjct: 46  ANSRIAKFVMEVAPPQFVSVMRHRTAKMLDTISEEEKDVSGSDALASTPR----SFSSCS 105

Query: 63  PPSPDSSAAAINSKYFLDQVPV 81
            PS  S+  A +SKYFL  VP+
Sbjct: 106 TPSSASAVVASDSKYFLRGVPI 123

The following BLAST results are available for this feature:

BLAST of CSPI01G24530.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G24530.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYE6_CUCSA	4.6e-41	97.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G534780 PE=4 SV=1	[more]
M5WKN5_PRUPE	1.7e-11	51.52	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025370mg PE=4 SV=1	[more]
M1AJ74_SOLTU	2.4e-10	56.58	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400009263 PE=4 SV=1	[more]
V4SI34_9ROSI	3.2e-10	48.91	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026858mg PE=4 SV=1	[more]
K4D737_SOLLC	1.6e-09	56.58	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]

BLAST of CSPI01G24530.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G30260.1	5.8e-11	43.75	BEST Arabidopsis thaliana protein match is: Galactosyltransferase fa...	[more]
AT4G21060.1	6.6e-07	63.41	Galactosyltransferase family protein	[more]

BLAST of CSPI01G24530.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210776\|gb\|KGN65872.1\|	6.6e-41	97.78	hypothetical protein Csa_1G534780 [Cucumis sativus]	[more]
gi\|645238218\|ref\|XP_008225574.1\|	8.4e-12	54.17	PREDICTED: uncharacterized protein LOC103325207 [Prunus mume]	[more]
gi\|595885448\|ref\|XP_007213158.1\|	2.4e-11	51.52	hypothetical protein PRUPE_ppa025370mg [Prunus persica]	[more]
gi\|567868821\|ref\|XP_006427032.1\|	4.6e-10	48.91	hypothetical protein CICLE_v10026858mg [Citrus clementina]	[more]
gi\|567868817\|ref\|XP_006427030.1\|	1.5e-08	48.78	hypothetical protein CICLE_v10026747mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI01G24530	CSPI01G24530	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI01G24530.1	CSPI01G24530.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI01G24530.1.utr5p1	CSPI01G24530.1.utr5p1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI01G24530.1.cds1	CSPI01G24530.1.cds1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI01G24530.1.utr3p1	CSPI01G24530.1.utr3p1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35101	FAMILY NOT NAMED	coord: 3..90 score: 1.0
None	No IPR available	PANTHER	PTHR35101:SF1	SUBFAMILY NOT NAMED	coord: 3..90 score: 1.0