Carg09289 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGTAGGGGTTGTTCCTCTCTCCTTATAAACCTAATTCAAGCATTTCTCCTTTCTGTTCACGGCGGAATCCAACTCTTCTTCAGAACCCCAAGTTGCAGCCGTCGCCATGGTTCGTCTTCTATCTTCGTGATTTCCCTTACCTTACGATGTTATCTGAGTTTTTTTGTTAGCTATTAATCTTCAATTTCGGTTTTTGTTCGTTGTTTCAGGTGAAGTATTCGAGGGAACCAGACAATCCCACCAAGTGTAATGCTCTTTCTCCGCTTTTTTTCTTATGGATCTTGTTCGATTCATGTTCAATACTCTGATTTGATTTGTTTATCGTCTACCGGTTTGTATTTTTATCTTTTCGCCTTGAACTGACACCCTGTTGTTTCTCTCTTCAGCCTGCAAGGCCCGTGGCTCGGACCTCAGAGTCCACTTTAAGGTAGGGTTTATTCCGCTTTGTTGATCTGCATTCTTTCGGTATAACAATCGTGTAGAAGTGCTATGAACTAGAAATTGAATGGTGTGTTTTTTTCATGGGCTTGACTCCCATTTTGATACCTCGCATATAATTTTCTGTTTTGTTTAACGTGCTCCTTTCTCTTATTGAGTGTCCTTCAATAGTTTTCTGTATGTAATTGATTGATTTAAGTGATAGTATATTAGGGCGTTTGTTAGTGATGTCGTCTTAAAATGTTCGTTTTGAAAAACAATAGCTGTTGCCGTCTAGGAGCTTTTGAATTTTCAAGGCATGAGAGCGAATACTAAAAGAAGAATCAATATCGTATTTTTTTTTTTTGTTTCTTTCGTCAACAGTAACATTTCTCTGTACTTCTTTGTACCCTGATGATAAAAGCAGGGCTCTGTTGCCTCCTGTGAACAGGGCTCTCGTAAACTTCAGGGAAATTATATGCCTTGTTATTGGGTGAACCTCTGTAACTAATAGTGTCTGAAGGTTCAGTAAATGATGCTACATAATTGAGCTTGTACTTTGACTTGCATATTTCGTTACTATATGTTGGTGCATAGACTCACCACAACTTGTTTGTTTTTTCATTTTATAGAACACAAGGGAAACTGCACATGCTATCAGAAAGTTGCCATTGGCCAAGGCCAAGAGGTACCTTGAGGATGTTCTTGCCCACAAGCAGGCCATTCCCTTCCGTCGCTTCTGTGGTGGTGTTGGAAGAACTGCTCAGGCAAAGAATAGGCATTCCAATGGCCAAGGTCGCTGGCCTGTCAAATCTGCCAAGTTTATTCTAGATTTGCTTAAGAATGCTGAGAGCAATGCTGAAGTATGTGTTTCCACTTTTTGTCTCTCCCTGAACTGGTGTTATAATCTTCTTCTTCCTCTTGCTAATAATTGTTTCTGCCTTTCAGGTTAAGGGTCTGGATGTTGATTTGCTCCACGTATCTCACGTCCAGGTGAACCAAGCTCAGAAGCAAAGGCGTCGCACCTACCGTGCTCATGGAAGAATCAACCGTATGTTATTGCTACAGTTTACTTATACTTCTATGGAAGTTCATGCTTCAACATATTACCTTACCCGTCTATTTCCATTCCATTTTTCTTTTTGGTTGGCAGCTTACATGTCCTCTCCTTGCCATATTGAGCTGATTTTGTCTGAAAAAGAAGAGCCTGTTAAGAAGGAGGTAATCAAACAGATTTCCCAACTACTTTTCTGCTGTAAAGAATTGGTTCAGTTAGACGTATTTCTTACTTTTGTTATTCATTTACAGCCCGAGACTCAGCTGGCGACTGGAAAACCTAAGAAAGGTCAAGCTATCCGTAGTGGCGCTTCCTCTTGATTGGCATAAGTATAAACTCTGTTGTGGGTTTTGCTATGCCATTTCTTTTTTGAAG TGTAGGGGTTGTTCCTCTCTCCTTATAAACCTAATTCAAGCATTTCTCCTTTCTGTTCACGGCGGAATCCAACTCTTCTTCAGAACCCCAAGTTGCAGCCGTCGCCATGGTGAAGTATTCGAGGGAACCAGACAATCCCACCAAGTGTAATGCTCTTTCTCCGCTTTTTTTCTTATGGATCTTGTTCGATTCATCCTGCAAGGCCCGTGGCTCGGACCTCAGAGTCCACTTTAAGAACACAAGGGAAACTGCACATGCTATCAGAAAGTTGCCATTGGCCAAGGCCAAGAGGTACCTTGAGGATGTTCTTGCCCACAAGCAGGCCATTCCCTTCCGTCGCTTCTGTGGTGGTGTTGGAAGAACTGCTCAGGCAAAGAATAGGCATTCCAATGGCCAAGGTCGCTGGCCTGTCAAATCTGCCAAGTTTATTCTAGATTTGCTTAAGAATGCTGAGAGCAATGCTGAAGTTAAGGGTCTGGATGTTGATTTGCTCCACGTATCTCACGTCCAGGTGAACCAAGCTCAGAAGCAAAGGCGTCGCACCTACCGTGCTCATGGAAGAATCAACCCTTACATGTCCTCTCCTTGCCATATTGAGCTGATTTTGTCTGAAAAAGAAGAGCCTGTTAAGAAGGAGCCCGAGACTCAGCTGGCGACTGGAAAACCTAAGAAAGGTCAAGCTATCCGTAGTGGCGCTTCCTCTTGATTGGCATAAGTATAAACTCTGTTGTGGGTTTTGCTATGCCATTTCTTTTTTGAAG ATGGTGAAGTATTCGAGGGAACCAGACAATCCCACCAAGTGTAATGCTCTTTCTCCGCTTTTTTTCTTATGGATCTTGTTCGATTCATCCTGCAAGGCCCGTGGCTCGGACCTCAGAGTCCACTTTAAGAACACAAGGGAAACTGCACATGCTATCAGAAAGTTGCCATTGGCCAAGGCCAAGAGGTACCTTGAGGATGTTCTTGCCCACAAGCAGGCCATTCCCTTCCGTCGCTTCTGTGGTGGTGTTGGAAGAACTGCTCAGGCAAAGAATAGGCATTCCAATGGCCAAGGTCGCTGGCCTGTCAAATCTGCCAAGTTTATTCTAGATTTGCTTAAGAATGCTGAGAGCAATGCTGAAGTTAAGGGTCTGGATGTTGATTTGCTCCACGTATCTCACGTCCAGGTGAACCAAGCTCAGAAGCAAAGGCGTCGCACCTACCGTGCTCATGGAAGAATCAACCCTTACATGTCCTCTCCTTGCCATATTGAGCTGATTTTGTCTGAAAAAGAAGAGCCTGTTAAGAAGGAGCCCGAGACTCAGCTGGCGACTGGAAAACCTAAGAAAGGTCAAGCTATCCGTAGTGGCGCTTCCTCTTGA MVKYSREPDNPTKCNALSPLFFLWILFDSSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSGASS
BLAST of Carg09289 vs. NCBI nr
Match: XP_004144196.1 (PREDICTED: 60S ribosomal protein L17-2 [Cucumis sativus] >XP_022132326.1 60S ribosomal protein L17-2-like [Momordica charantia] >XP_022962539.1 60S ribosomal protein L17-2-like [Cucurbita moschata]) HSP 1 Score: 357.8 bits (917), Expect = 2.3e-95 Identity = 183/199 (91.96%), Postives = 183/199 (91.96%), Query Frame = 0
BLAST of Carg09289 vs. NCBI nr
Match: XP_023545223.1 (60S ribosomal protein L17-2-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 356.3 bits (913), Expect = 6.8e-95 Identity = 182/199 (91.46%), Postives = 182/199 (91.46%), Query Frame = 0
BLAST of Carg09289 vs. NCBI nr
Match: XP_008445497.1 (PREDICTED: 60S ribosomal protein L17-2-like [Cucumis melo]) HSP 1 Score: 354.0 bits (907), Expect = 3.4e-94 Identity = 181/199 (90.95%), Postives = 182/199 (91.46%), Query Frame = 0
BLAST of Carg09289 vs. NCBI nr
Match: XP_022997268.1 (60S ribosomal protein L17-2-like [Cucurbita maxima]) HSP 1 Score: 354.0 bits (907), Expect = 3.4e-94 Identity = 181/199 (90.95%), Postives = 182/199 (91.46%), Query Frame = 0
BLAST of Carg09289 vs. NCBI nr
Match: XP_022951813.1 (60S ribosomal protein L17-2-like [Cucurbita moschata] >XP_023002842.1 60S ribosomal protein L17-2-like [Cucurbita maxima]) HSP 1 Score: 348.6 bits (893), Expect = 1.4e-92 Identity = 178/199 (89.45%), Postives = 180/199 (90.45%), Query Frame = 0
BLAST of Carg09289 vs. TAIR10
Match: AT1G67430.1 (Ribosomal protein L22p/L17e family protein) HSP 1 Score: 304.3 bits (778), Expect = 5.5e-83 Identity = 156/192 (81.25%), Postives = 163/192 (84.90%), Query Frame = 0
BLAST of Carg09289 vs. TAIR10
Match: AT1G27400.1 (Ribosomal protein L22p/L17e family protein) HSP 1 Score: 303.5 bits (776), Expect = 9.4e-83 Identity = 155/190 (81.58%), Postives = 163/190 (85.79%), Query Frame = 0
BLAST of Carg09289 vs. Swiss-Prot
Match: sp|P51413|RL172_ARATH (60S ribosomal protein L17-2 OS=Arabidopsis thaliana OX=3702 GN=RPL17B PE=2 SV=2) HSP 1 Score: 304.3 bits (778), Expect = 1.0e-81 Identity = 156/192 (81.25%), Postives = 163/192 (84.90%), Query Frame = 0
BLAST of Carg09289 vs. Swiss-Prot
Match: sp|Q93VI3|RL171_ARATH (60S ribosomal protein L17-1 OS=Arabidopsis thaliana OX=3702 GN=RPL17A PE=2 SV=1) HSP 1 Score: 303.5 bits (776), Expect = 1.7e-81 Identity = 155/190 (81.58%), Postives = 163/190 (85.79%), Query Frame = 0
BLAST of Carg09289 vs. Swiss-Prot
Match: sp|O48557|RL17_MAIZE (60S ribosomal protein L17 OS=Zea mays OX=4577 GN=RPL17 PE=2 SV=1) HSP 1 Score: 291.2 bits (744), Expect = 8.7e-78 Identity = 147/186 (79.03%), Postives = 158/186 (84.95%), Query Frame = 0
BLAST of Carg09289 vs. Swiss-Prot
Match: sp|P35266|RL171_HORVU (60S ribosomal protein L17-1 OS=Hordeum vulgare OX=4513 PE=2 SV=1) HSP 1 Score: 282.3 bits (721), Expect = 4.1e-75 Identity = 141/183 (77.05%), Postives = 152/183 (83.06%), Query Frame = 0
BLAST of Carg09289 vs. Swiss-Prot
Match: sp|P35267|RL172_HORVU (60S ribosomal protein L17-2 OS=Hordeum vulgare OX=4513 PE=2 SV=1) HSP 1 Score: 280.0 bits (715), Expect = 2.0e-74 Identity = 140/186 (75.27%), Postives = 153/186 (82.26%), Query Frame = 0
BLAST of Carg09289 vs. TrEMBL
Match: tr|A0A1S3BCV8|A0A1S3BCV8_CUCME (60S ribosomal protein L17-2-like OS=Cucumis melo OX=3656 GN=LOC103488496 PE=3 SV=1) HSP 1 Score: 354.0 bits (907), Expect = 2.2e-94 Identity = 181/199 (90.95%), Postives = 182/199 (91.46%), Query Frame = 0
BLAST of Carg09289 vs. TrEMBL
Match: tr|A0A0A0KIM9|A0A0A0KIM9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G365170 PE=3 SV=1) HSP 1 Score: 342.4 bits (877), Expect = 6.7e-91 Identity = 173/182 (95.05%), Postives = 175/182 (96.15%), Query Frame = 0
BLAST of Carg09289 vs. TrEMBL
Match: tr|A0A1S3BDN4|A0A1S3BDN4_CUCME (60S ribosomal protein L17-2 OS=Cucumis melo OX=3656 GN=LOC103488896 PE=3 SV=1) HSP 1 Score: 341.7 bits (875), Expect = 1.1e-90 Identity = 175/199 (87.94%), Postives = 178/199 (89.45%), Query Frame = 0
BLAST of Carg09289 vs. TrEMBL
Match: tr|A0A0A0KPZ4|A0A0A0KPZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G589950 PE=3 SV=1) HSP 1 Score: 341.7 bits (875), Expect = 1.1e-90 Identity = 175/199 (87.94%), Postives = 178/199 (89.45%), Query Frame = 0
BLAST of Carg09289 vs. TrEMBL
Match: tr|A0A0S3S1A7|A0A0S3S1A7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.04G428100 PE=3 SV=1) HSP 1 Score: 339.0 bits (868), Expect = 7.4e-90 Identity = 174/199 (87.44%), Postives = 182/199 (91.46%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene:
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