Carg11546 (gene) Silver-seed gourd

NameCarg11546
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionEmbryo sac development arrest 6, putative
LocationCucurbita_argyrosperma_scaffold_083 : 593986 .. 594378 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTTTACCTCCTCGTAGATTAATGACCTCAGATGGGCCCAGTTCCAGGCCCAATAAGAGGAAAGAGAGAAAGGGCTTTGATGATGAGGCCCACCAACTGTCATTCACAGCTAAAGTATCGAAGCCGACACCGCCTCAATCCAACCACCTCCTAGCCGGCTACTTGGCTCACGAGTTCTTCACCAAAGGCACCCTCTTTGGCCAAGCTTGGGATCATCCGGATGTGTCTATGGCGGCTTCACCACCTGACCTCAACGAGAAACGCCAAGCCGAGCTGCATCCCAAGAATTACCAGTCCTACGTGGAGGTAGCTAATTTGTTGAAACACGGTGGGGCCCACTTTCAAGGTATTGTCAATCCCACCCAGCTAGCTCGGTCGCTAAACCTATGA

mRNA sequence

ATGCGTTTACCTCCTCGTAGATTAATGACCTCAGATGGGCCCAGTTCCAGGCCCAATAAGAGGAAAGAGAGAAAGGGCTTTGATGATGAGGCCCACCAACTGTCATTCACAGCTAAAGTATCGAAGCCGACACCGCCTCAATCCAACCACCTCCTAGCCGGCTACTTGGCTCACGAGTTCTTCACCAAAGGCACCCTCTTTGGCCAAGCTTGGGATCATCCGGATGTGTCTATGGCGGCTTCACCACCTGACCTCAACGAGAAACGCCAAGCCGAGCTGCATCCCAAGAATTACCAGTCCTACGTGGAGGTAGCTAATTTGTTGAAACACGGTGGGGCCCACTTTCAAGGTATTGTCAATCCCACCCAGCTAGCTCGGTCGCTAAACCTATGA

Coding sequence (CDS)

ATGCGTTTACCTCCTCGTAGATTAATGACCTCAGATGGGCCCAGTTCCAGGCCCAATAAGAGGAAAGAGAGAAAGGGCTTTGATGATGAGGCCCACCAACTGTCATTCACAGCTAAAGTATCGAAGCCGACACCGCCTCAATCCAACCACCTCCTAGCCGGCTACTTGGCTCACGAGTTCTTCACCAAAGGCACCCTCTTTGGCCAAGCTTGGGATCATCCGGATGTGTCTATGGCGGCTTCACCACCTGACCTCAACGAGAAACGCCAAGCCGAGCTGCATCCCAAGAATTACCAGTCCTACGTGGAGGTAGCTAATTTGTTGAAACACGGTGGGGCCCACTTTCAAGGTATTGTCAATCCCACCCAGCTAGCTCGGTCGCTAAACCTATGA

Protein sequence

MRLPPRRLMTSDGPSSRPNKRKERKGFDDEAHQLSFTAKVSKPTPPQSNHLLAGYLAHEFFTKGTLFGQAWDHPDVSMAASPPDLNEKRQAELHPKNYQSYVEVANLLKHGGAHFQGIVNPTQLARSLNL
BLAST of Carg11546 vs. NCBI nr
Match: PQQ20644.1 (uncharacterized protein Pyn_16343 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 118.6 bits (296), Expect = 1.6e-23
Identity = 74/144 (51.39%), Postives = 88/144 (61.11%), Query Frame = 0

Query: 1   MRLPPRRLMTSDGPSSRPNKRKERKGFDDEAHQLSFTAKVSK------------PTPPQS 60
           MRLPPRR+ T++  +S+ NKRKE++   +  HQ + T K+ K            P P  S
Sbjct: 6   MRLPPRRISTTN--ASKYNKRKEKESGFNALHQSTTTTKMLKLAPPPQAGSNRSPEPASS 65

Query: 61  NHLLAGYLAHEFFTKGTLFGQAWDHPDVSMA-ASPPDLNEKRQ-AELHPKNYQSYVEVAN 120
             LLAGYLAHEF TKGTL GQ WD      A ASP +  E R  AE H +N + YVEVA+
Sbjct: 66  GQLLAGYLAHEFLTKGTLLGQPWDTSKAEPAPASPGEEAEPRSGAEPHFENLERYVEVAD 125

Query: 121 LLKHGGAHFQGIVNPTQLARSLNL 131
           LLK  GAH  GIVNPTQLAR L L
Sbjct: 126 LLKTDGAHLAGIVNPTQLARVLQL 147

BLAST of Carg11546 vs. NCBI nr
Match: XP_008459949.1 (PREDICTED: uncharacterized protein LOC103498915 [Cucumis melo])

HSP 1 Score: 114.4 bits (285), Expect = 2.9e-22
Identity = 66/119 (55.46%), Postives = 69/119 (57.98%), Query Frame = 0

Query: 32  HQLSFTAKVSKPTPPQSNHLLAGYLAHEFFTKGTLFGQAWD-HPDVS------------- 91
           HQLSFTAKV  PTPP S  LLAGYLAHEF TKGTLFGQ WD +PD +             
Sbjct: 51  HQLSFTAKV--PTPPHSKQLLAGYLAHEFLTKGTLFGQTWDNNPDPAXXXXXXXXXXXXX 110

Query: 92  ------MAASPPDLNEKRQAELHPKNYQSYVEVANLLKHGGAHFQGIVNPTQLARSLNL 131
                                    NYQSYVEVANLLKH G+H QGIVNPTQLAR LNL
Sbjct: 111 XXXXXXXXXXXXXXXXXXXXXXXXXNYQSYVEVANLLKHSGSHLQGIVNPTQLARLLNL 167

BLAST of Carg11546 vs. NCBI nr
Match: OAY32682.1 (hypothetical protein MANES_13G037700 [Manihot esculenta])

HSP 1 Score: 113.2 bits (282), Expect = 6.5e-22
Identity = 68/147 (46.26%), Postives = 86/147 (58.50%), Query Frame = 0

Query: 1   MRLPPRRLMTSDGPSSRPNKRKERKGFDDEAHQLSFTAKVSKPTPPQ-----------SN 60
           MRLPPRR++TS       NKRKER+ F D         K++KP+ PQ           SN
Sbjct: 6   MRLPPRRVLTS-------NKRKERECF-DSLKPFPPPTKLAKPSIPQVGSEKLPDPVSSN 65

Query: 61  HLLAGYLAHEFFTKGTLFGQAWDHPDVSMAA------SPPDLNEKRQAELHPKNYQSYVE 120
            LLAGYLAHE+ TKGTLFGQ WD       A       P    ++ +AE + +NYQ YVE
Sbjct: 66  QLLAGYLAHEYLTKGTLFGQPWDPAGAEAVAGEPKKVKPSQKAKEEEAEPNKENYQRYVE 125

Query: 121 VANLLKHGGAHFQGIVNPTQLARSLNL 131
           V++LLK  GAH  G+VNP+QL+R L +
Sbjct: 126 VSSLLKAEGAHLPGVVNPSQLSRFLQM 144

BLAST of Carg11546 vs. NCBI nr
Match: XP_004289974.1 (PREDICTED: uncharacterized protein LOC101296725 [Fragaria vesca subsp. vesca])

HSP 1 Score: 112.8 bits (281), Expect = 8.5e-22
Identity = 71/141 (50.35%), Postives = 83/141 (58.87%), Query Frame = 0

Query: 1   MRLPPRRLMTSDGPS-SRPNKRKERKGFDDEAHQLSFTAKVSKPTPP------QSNHLLA 60
           MRLPPRR+ T+   S +   KRKER+   D  H  + T K+S    P       S HLLA
Sbjct: 6   MRLPPRRISTTIASSNNNAPKRKERESLLDAPHNPAKTLKLSHQAEPPGSSALASGHLLA 65

Query: 61  GYLAHEFFTKGTLFGQAWDHPDVSMAASPP--DLNEKRQAELHP--KNYQSYVEVANLLK 120
           GYLAHEF TKGTL GQ WD    S A  PP     ++R+AE  P  +  + YVEVA+LLK
Sbjct: 66  GYLAHEFLTKGTLLGQLWDPTARSAAEEPPVEKSPDRREAEAEPQYEKLERYVEVADLLK 125

Query: 121 HGGAHFQGIVNPTQLARSLNL 131
             GA   GIVNPTQLAR L L
Sbjct: 126 TDGAQLAGIVNPTQLARFLQL 146

BLAST of Carg11546 vs. NCBI nr
Match: XP_021664504.1 (uncharacterized protein LOC110653249 [Hevea brasiliensis])

HSP 1 Score: 108.2 bits (269), Expect = 2.1e-20
Identity = 65/151 (43.05%), Postives = 86/151 (56.95%), Query Frame = 0

Query: 1   MRLPPRRLMTSDGPSSRPNKRKERKGFD----DEAHQLSFTAKVSKPT-----------P 60
           MRLPPRR++TS       NKRK R+GFD          + T K++KP+           P
Sbjct: 6   MRLPPRRVLTS-------NKRKGREGFDSLKPSPPPTPTSTTKLAKPSISQVGGGKLPDP 65

Query: 61  PQSNHLLAGYLAHEFFTKGTLFGQAWDHPDVSMAA------SPPDLNEKRQAELHPKNYQ 120
             SN LLAGYLAHE+ TKGTLFGQ WD       A       P    ++ + + + + Y+
Sbjct: 66  VSSNQLLAGYLAHEYLTKGTLFGQPWDPARAEEVALEPKKIKPSQRLKEEETQPNKETYK 125

Query: 121 SYVEVANLLKHGGAHFQGIVNPTQLARSLNL 131
            YVEV++LLK GG+H  G+VNP+QLAR L +
Sbjct: 126 RYVEVSSLLKAGGSHLPGVVNPSQLARFLQM 149

BLAST of Carg11546 vs. TAIR10
Match: AT1G04000.1 (unknown protein)

HSP 1 Score: 85.1 bits (209), Expect = 3.4e-17
Identity = 60/155 (38.71%), Postives = 75/155 (48.39%), Query Frame = 0

Query: 1   MRLPPRRLMTSDGPSSRPNKRKERKGF-----DDEAHQLSFTAKVSKPTPPQSNH----- 60
           MRLPPRR++T+D       KRKER  F     D+      F +   K  PP  N      
Sbjct: 6   MRLPPRRVLTAD-------KRKERDAFISSVTDNPPEIAKFPSPPPKLVPPPVNPISKKS 65

Query: 61  -------------LLAGYLAHEFFTKGTLFGQAWDHPDVSMAAS--PPDLNEKRQAELHP 120
                        +LAGYL+HE+ T+GTLFG+ W+       +S   P    +   E  P
Sbjct: 66  STAAAEPIGSNQLMLAGYLSHEYLTQGTLFGEQWNQARAQAESSKIKPSHTVEPAEECEP 125

Query: 121 KNYQSYVEVANLLKHGGAHFQGIVNPTQLARSLNL 131
           K  + Y EVANLL+  GA   GIVNP QLAR L L
Sbjct: 126 KR-KRYREVANLLRSDGAQLPGIVNPAQLARFLKL 152

BLAST of Carg11546 vs. TAIR10
Match: AT5G44060.1 (unknown protein)

HSP 1 Score: 80.9 bits (198), Expect = 6.5e-16
Identity = 45/100 (45.00%), Postives = 54/100 (54.00%), Query Frame = 0

Query: 37  TAKVSKPTPPQSNHLLAGYLAHEFFTKGTLFGQAWD------HPDVSMAASPPDLNEKRQ 96
           TA V+   P  SN LLAGYLAHEF   GTLFG+ W+       P  + +  P        
Sbjct: 51  TATVALAEPVCSNQLLAGYLAHEFLNNGTLFGELWNPTKAQAGPLTTQSIDPRKNKPSHD 110

Query: 97  AELHPKNYQSYVEVANLLKHGGAHFQGIVNPTQLARSLNL 131
            E      + YVEVAN+L+  G H  GIVNP+QLAR L L
Sbjct: 111 IEPSDHKRRRYVEVANILRVDGTHLPGIVNPSQLARFLKL 150

BLAST of Carg11546 vs. TAIR10
Match: AT3G23440.1 (embryo sac development arrest 6)

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-10
Identity = 35/86 (40.70%), Postives = 49/86 (56.98%), Query Frame = 0

Query: 49  NHLLAGYLAHEFFTKGTLFGQ----AWDHPDVSMAASPPDLNEKRQAELHPKNYQSYVEV 108
           N LLAGY+AHE+ T GT+ G+     W      ++ SP    E ++A       QSY EV
Sbjct: 29  NWLLAGYMAHEYLTCGTMLGRKLYSGWAEVGPLVSPSPLQSREVKKAR------QSYSEV 88

Query: 109 ANLLKHGGAHFQGIVNPTQLARSLNL 131
           A++ K  G H  G+VNPTQLA+ + +
Sbjct: 89  ASVFKTDGNHVPGVVNPTQLAKWIQM 108

BLAST of Carg11546 vs. TrEMBL
Match: tr|A0A1S3CBD7|A0A1S3CBD7_CUCME (uncharacterized protein LOC103498915 OS=Cucumis melo OX=3656 GN=LOC103498915 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.9e-22
Identity = 66/119 (55.46%), Postives = 69/119 (57.98%), Query Frame = 0

Query: 32  HQLSFTAKVSKPTPPQSNHLLAGYLAHEFFTKGTLFGQAWD-HPDVS------------- 91
           HQLSFTAKV  PTPP S  LLAGYLAHEF TKGTLFGQ WD +PD +             
Sbjct: 51  HQLSFTAKV--PTPPHSKQLLAGYLAHEFLTKGTLFGQTWDNNPDPAXXXXXXXXXXXXX 110

Query: 92  ------MAASPPDLNEKRQAELHPKNYQSYVEVANLLKHGGAHFQGIVNPTQLARSLNL 131
                                    NYQSYVEVANLLKH G+H QGIVNPTQLAR LNL
Sbjct: 111 XXXXXXXXXXXXXXXXXXXXXXXXXNYQSYVEVANLLKHSGSHLQGIVNPTQLARLLNL 167

BLAST of Carg11546 vs. TrEMBL
Match: tr|A0A2C9UPY2|A0A2C9UPY2_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G037700 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.3e-22
Identity = 68/147 (46.26%), Postives = 86/147 (58.50%), Query Frame = 0

Query: 1   MRLPPRRLMTSDGPSSRPNKRKERKGFDDEAHQLSFTAKVSKPTPPQ-----------SN 60
           MRLPPRR++TS       NKRKER+ F D         K++KP+ PQ           SN
Sbjct: 6   MRLPPRRVLTS-------NKRKERECF-DSLKPFPPPTKLAKPSIPQVGSEKLPDPVSSN 65

Query: 61  HLLAGYLAHEFFTKGTLFGQAWDHPDVSMAA------SPPDLNEKRQAELHPKNYQSYVE 120
            LLAGYLAHE+ TKGTLFGQ WD       A       P    ++ +AE + +NYQ YVE
Sbjct: 66  QLLAGYLAHEYLTKGTLFGQPWDPAGAEAVAGEPKKVKPSQKAKEEEAEPNKENYQRYVE 125

Query: 121 VANLLKHGGAHFQGIVNPTQLARSLNL 131
           V++LLK  GAH  G+VNP+QL+R L +
Sbjct: 126 VSSLLKAEGAHLPGVVNPSQLSRFLQM 144

BLAST of Carg11546 vs. TrEMBL
Match: tr|A0A2I4F664|A0A2I4F664_9ROSI (uncharacterized protein LOC108995916 OS=Juglans regia OX=51240 GN=LOC108995916 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.1e-20
Identity = 66/147 (44.90%), Postives = 86/147 (58.50%), Query Frame = 0

Query: 1   MRLPPRRLMTSDGPSSRPNKRKERKGFDD-EAHQLSFTAKVSKPTPPQS-------NHLL 60
           MRLPPRR++T   P++   KRKER GFD+ +    + T K+ KP  P+        N LL
Sbjct: 6   MRLPPRRVLT---PNALDRKRKERDGFDEFKPSTTTTTKKLFKPDAPEEEPISFNRNRLL 65

Query: 61  AGYLAHEFFTKGTLFGQAWDHPD-----VSMAASPPDLNE----KRQAELHPKNYQSYVE 120
           AGYLAHE+ T+GTL G+ WD        VS   +P +  E    +R+     ++Y+ YVE
Sbjct: 66  AGYLAHEYLTRGTLLGRPWDPVQDEAVPVSNRGNPNENGEAEERRRRGRRQVEDYERYVE 125

Query: 121 VANLLKHGGAHFQGIVNPTQLARSLNL 131
           V NLLK  GAH  GIVNPTQLA  L +
Sbjct: 126 VVNLLKTDGAHVPGIVNPTQLASFLQM 149

BLAST of Carg11546 vs. TrEMBL
Match: tr|A0A2C9UT88|A0A2C9UT88_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G034900 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.0e-20
Identity = 68/152 (44.74%), Postives = 85/152 (55.92%), Query Frame = 0

Query: 1   MRLPPRRLMTSDGPSSRPNKRKERKGFDD--------EAHQLSFTAKVS-------KPTP 60
           MRLPPRR+ TS       +KRKER+GFD                 AK S       KP+ 
Sbjct: 6   MRLPPRRVSTS-------SKRKEREGFDSLKXXXXXXXXXXXXXLAKPSIAQVGAGKPSD 65

Query: 61  P-QSNHLLAGYLAHEFFTKGTLFGQAWDHPDVSMAA------SPPDLNEKRQAELHPKNY 120
           P  SN LLAGYLAHE+ TKGTL GQ WD       A       P  + ++ +AE + +NY
Sbjct: 66  PVPSNKLLAGYLAHEYLTKGTLLGQPWDPARAEEVAVESKKIKPSQIGKEEEAEPNKENY 125

Query: 121 QSYVEVANLLKHGGAHFQGIVNPTQLARSLNL 131
           + YVEV++LLK  GAH  G+VNP+QLAR L +
Sbjct: 126 KRYVEVSSLLKAEGAHISGVVNPSQLARFLQM 150

BLAST of Carg11546 vs. TrEMBL
Match: tr|A0A0A0KDC0|A0A0A0KDC0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G088100 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 5.3e-20
Identity = 72/157 (45.86%), Postives = 75/157 (47.77%), Query Frame = 0

Query: 1   MRLPPRRLMTS---DGPSSRPNKRKERKGFDDEAHQLSFTAKVSKPTPPQSNHLLAGYLA 60
           MRLPPRRLMTS                                       S  LLAGYLA
Sbjct: 10  MRLPPRRLMTSPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKQLLAGYLA 69

Query: 61  HEFFTKGTLFGQAWDHPDVSMAAS--------------------PPDLNEKRQAEL---H 120
           HEF TKGTLFGQ WD+PD                            +  EKRQAE    H
Sbjct: 70  HEFLTKGTLFGQTWDNPDXXXXXXXXXXXXXXXXXXXXXXXXPLTTEPQEKRQAEAQLHH 129

Query: 121 P-KNYQSYVEVANLLKHGGAHFQGIVNPTQLARSLNL 131
           P KNYQSYVEVANLLKH G H +GIVNPTQLAR LNL
Sbjct: 130 PKKNYQSYVEVANLLKHNGPHLEGIVNPTQLARFLNL 166

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PQQ20644.11.6e-2351.39uncharacterized protein Pyn_16343 [Prunus yedoensis var. nudiflora][more]
XP_008459949.12.9e-2255.46PREDICTED: uncharacterized protein LOC103498915 [Cucumis melo][more]
OAY32682.16.5e-2246.26hypothetical protein MANES_13G037700 [Manihot esculenta][more]
XP_004289974.18.5e-2250.35PREDICTED: uncharacterized protein LOC101296725 [Fragaria vesca subsp. vesca][more]
XP_021664504.12.1e-2043.05uncharacterized protein LOC110653249 [Hevea brasiliensis][more]
Match NameE-valueIdentityDescription
AT1G04000.13.4e-1738.71unknown protein[more]
AT5G44060.16.5e-1645.00unknown protein[more]
AT3G23440.11.1e-1040.70embryo sac development arrest 6[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3CBD7|A0A1S3CBD7_CUCME1.9e-2255.46uncharacterized protein LOC103498915 OS=Cucumis melo OX=3656 GN=LOC103498915 PE=... [more]
tr|A0A2C9UPY2|A0A2C9UPY2_MANES4.3e-2246.26Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G037700 PE=4 SV=... [more]
tr|A0A2I4F664|A0A2I4F664_9ROSI3.1e-2044.90uncharacterized protein LOC108995916 OS=Juglans regia OX=51240 GN=LOC108995916 P... [more]
tr|A0A2C9UT88|A0A2C9UT88_MANES4.0e-2044.74Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G034900 PE=4 SV=... [more]
tr|A0A0A0KDC0|A0A0A0KDC0_CUCSA5.3e-2045.86Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G088100 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg11546-RACarg11546-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availablePANTHERPTHR34657FAMILY NOT NAMEDcoord: 1..129