Cp4.1LG12g10140 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG12g10140
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Succinyl-CoA ligase subunit beta
Location	Cp4.1LG12 : 9659791 .. 9664515 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTTTACCTCCTCGTAGATTAATGACCTCAGATGGGCCCAGTTCCAGGCCCAATAAGAGGAAAGAGAGAAAGGGCTTTGATGATGAGGCCCACCAACTGTCATTCACAGCTAAAGTATCGAAGCCGACACCGCCTCAATCCAACCACCTCCTAGCCGGCTACTTAGCTCACGAGTTCTTCACCAAAGGCACCCTCTTTGGCCAAGCTTGGGATCATCCGGATGTGTCTACCGCGGCTTCACCACCTGACCTCAACGACAAACGCCAAGCCGAGCTGCACCCCAAGAATTACCAGTCCTACGTGGAGGTAGCTAATTTGTTGAAACACGGTGGGGCCCACTTTGAAGGTATTGTCAATCCCACCCAGCTAGCTCGCTTGTTAAACCTATGATTTTATTTTAATTTTTTCCCCTTTTCTTAACCCTATCTGTGTAACATGTGGCGTGCTGTGGACCATTTTTTTTTAGGGGGACCACTTGAATTTTAAATAAGAATTGAGAAAATTAATTTCCCTTTTATCTTAATATAATCAACCAATATTTTGTCCTCTCTTTTCAATTTAATTATAAAAGTTTATTAATATATGAATTATTTAATTAATTTCTATTATTTTGTCCACTCAATTTTTTTCCACTAGTTATTTGATACAATAAATGAAAATATTTTAGAGTATTTACTAAATTTTGTACAAATATATAATTTTTTTTTAAATTATTCATAAAAATGTATTATTAATGGTTTATTTAATTACTCGTTGACTAAATTTATTTAGTGATTATAAAAGTATTACCAAAACTTTCTTAATTTAAGAAATGCATATGGTAATAAAGTTATTTTTTTTTAATAATATTACTTTATAAGACCATTAACTTTGAAATAAAATAGCTAAAATAGTTTAATTAATTATTTATTTATTTAATATAATTTACATGTTAATAAAAAAATAATAACAATATTTTTTCTTATAAATTTGTTGAATGAATAATTTATTTTTATTACTATCAAGTAATCAAACTCTTTTGAATAATTATTTTGTAAACCAAAGTTTGTTTTATTATTATTATTATTTCCAATTTTAATTAAATGTATTTACTTACTTATTATACAATTACCACTAATTAACTTTTATTTGACTAATGTATTTTATTAAAAAATTGGTTAATATAGAGTAGAATAATATGTATGGTAGTAAATCTGGATTTTTAACTATTTTTTCTGTAAAAAAAAAGAAAAAAAGAAAAAAAAAAAGAATATTACATTTATTTGAGTCGCAAATATTTTATAATTAATTAGATGAGTTAAATATATGTGTTTATTTTATCAAAATTGTATAAATAATGTATTTTATTTTAAGCATTACATTTTTATAAAATCTATTTAGAATTAAAATAATCATATGCTTAAGTTATATATTCTAAAAAGATCAAATAAATAAGTTTGTTCGGTCTAATTTAGATACGATACAAATGTCAAATTATTATAAATGACGACTATTAAATAACAAACAACTAATAATTTATTTCTTATTCGAGTGAGTTTTATGGGCCGACTGGATCCGAAATTTCTCAAGCTCAAGCATTTACTTTTTTAGTTAGAGACGAACGTCTTGGAGCTATTGTTGGATTGGTTGGACCTATGGTTGGACCTACTGGTTTAGGTAAATATCCAATATGTTTTCCAATCAGAGAAGTCATTTTTTGGGATCTATGTGCTCCTTGGTTAGAACCACTAAGATGTCCTAATAGTTTGGACTTGAGTAGACTGAAAAAAGACATACAACCTTAGCACGAACGACATTTCGAGTAATATATTACACTTGCTCCTTTAGGTTCTTTAAATTTCGTGGGTGGCGTAGCTAGTGAAATTAATGCAGTCAATTATGTCTCCTAGAAGTTGGTTAGCTATCTCTCATTTTGTTCTAGGATTCTTCCTATTCGGAGGTCATTTATGACATCCAGGAAGGGCTGGTGCTGCAAGATTTGAAAAGGAATTGATCGTGATTTTGAACTTTGTTCTTTTCATGACTCCTCGTAACGGAGACACGCGATCTAATGCCTTAAGTCAAAATCAATTTGATTCCACCATATATATATATATATATATATATATATTAGGTTAGACGGATGGTTTATATTTTAAAAGCCTTAAAATTTGTGTTAAAACATCATGACTGACGTAGGTGGATGGTGCCAATAGACAATGATTTTGAAAGTATTTAAAAAAAAAATAAATGACATAAATTATTTTTAAATTATATTTTATTTATGTAAAGAGACCATTTATATCTTTTTATATTTATTTTTTACTTACCCTAAACCCTAATTTTAAAAGACGTAATAGTAATTAACTAAATATTAAAAATTTTAAATAAAGAAGAAGAAGAAGAAATTTCCGTCGCTGGGAACGATCATTCTCTGCCTCCGCCATAAAAAGGCCATAAATTTCCTTCTGCTACCATCACTTTCTGCAGATTTTATCGATCGTTCTATCATACATGGTGAGAGGATTGCTCAACAAGATCGTCTCTCGATCTCTTTCTGTGGCAGGCAAATGGCAGCAGCAACAGCTCCGCCGTCTCAACGTCCATGAGTATCAGGTTCTTTTTTTCTAATACTCTATTTAACTATGCGCATATACTGGATTTTGATTTCTGGACATGTTTAGGCGTCATAATATTTGGGTAATTTTTGTTTTTGGATGCTTCTTGTATTTGATTACTGGATTTTGCCCACGAACTTTGTTTTTTTTTTTGTTGTTTTTACTGTGGAGATCAGGGGACTGAGTTGATGAAAAAATATGGGATCAATGTGCGTAAGGGTATTTTGCTATTTCTTCTGTTGATGAAGCAAAAAACGCAGTTCAAACTGGTTTTCCTGATGCGAAAGAGGTAAGCATGGGGCGTTTCTTTCTTTGGGCGCTTACAAATTCTGAAAAGGTAGAAATCATTACCGTGATAACCCACGCTAGCAGATATTGTCCTCTTTCCTTTCGGGCTTCCCCTCAAAGCTTTAAAATGCATATACTAGTGAAAGGTTTCCACACACCCTTATAAATGGTGTTTCTTTCTACTCCCAACCAACGTGGGTTCTCACAATCCACCCCCTTTGTGGCCCAACGTCCTTACTGGCACTCGTTACTTTCTCCAATTGATGTGGGACCCCACCAAATCCACCCGCTTTGGTGCCCAGCGTCCTTACTGGCACACCGCCTCGAATCTACCCCTTCGGGAAACAGCCTCCTCGCTGGCACATAGTCTGGTGTCTGGCTTTGATACCATTCGTAACGACCCAAGCCAACAGCTAGCAGATATTGTCTCCTTTAGGCCTGCTTTAAAACGTGTCTGCTTGGGAAAAGTTTTCACATCCTTACAAGGGTGTTTCATTCTCCTCCCCAACTAATGTGGGATTGTGTCCCCAACCAATGTGGATTCTCACAGCTAATGCCACGTTACAAATTGGCAAAAACTTGGGCACTTATGAGAATCATTATACAGAATTTTGGCTAGTGGAAGAGGTTTGGGAACATTCAAAAGCGGCTTAAAGGTGGAGTACACATAGTGAACGTGGAACAGGTTGAAGAGCTTGCTGGTAGGATGCCCTTTTTGAATATTCAAGTTCTACCAAAAAATCCCAGCAGTGTTTTCTTGTACATAGATGCTTACTCCATTGGAACTAGGATCATGAAATAAAATCCTTCCCCATTTTTTTTCCTATTATGTGTGCAGGCAAGATGGTTGGGCAGATACTTGTCACTAAACAAACTGGTCCTCAGGGCAAAGTTGTCAGCAAGGTAACATATGTCTTTCGACCCTGCGTAGTCGCTTGAGTTCCTTTATGCACAATCTTCCTGAATATGTGAATCTAGATGTAATAGAATTTGTGGATTCTGTTCTTCCGCCTTGGTTCATGATTTTGTTTTTTTGAAACCTTGCCAAGTTTCTCAAGGTTCTAATACTTTATAGCATTAGCTCCTTATGGCTCAATTTTTTGACTCCACAATTTGGAAGAAGATTTTGCATTGGTTGAATTCACTTTGTGAGGAAGTGGAATGTTGCCTTTTTCTCTTTAGTTTTTGTGGGCGTTCATTGAGCAAATTCACCTTGTAGTTGACAAAGACCAAATTATTTAGGCTAATTACCACTTAAACATCGAAATAGACTTTCTAAAGTTACTTTTCGGTCAACTTGCATGCATTTCGACTAATCTCACGGGATAGTCTACTTGAGCCTATAACATTTGGGTACCAAGCAAACTGATCGGAGATTAAATCCCAAGTAACGTGGTCAACACCTCAGATTGAACCCATTGGCTAAGCCTTTTATTTATTATACTTATGACCCCTATTGATGTTTTATTGACTTTTTTGAACACTTATTGATGTTTTAATGACTGAATTAATTTGATTCCCTTCTTCTTCTTTGTATATCTCAATGCAGGTTTATCTGTGTGAGAAGTTGTCACTTATGAACGAAATGTACTTTGCTATCACTCTGGATCGTAAAATCTCAATGCAGGCCTATACTTCGTTTGGAGGAGGAGATGTGAATTACATAGGATTAGTTATAAAAAATTTATTGTAAGATTGGGTATGACCACCTTGTGTTGTTGTTGTTGTTGTAAAGGTTGCCCTCAAAGTGCCCGTGATGGTTCGGCTTGAAGAAGGTACAAATGTCGACCAAGGAAAAACAATTCTCAAGGTAAATCTGCGCTCTTTAAGATCTTGA

mRNA sequence

ATGCGTTTACCTCCTCGTAGATTAATGACCTCAGATGGGCCCAGTTCCAGGCCCAATAAGAGGAAAGAGAGAAAGGGCTTTGATGATGAGGCCCACCAACTGTCATTCACAGCTAAAGTATCGAAGCCGACACCGCCTCAATCCAACCACCTCCTAGCCGGCTACTTAGCTCACGAGTTCTTCACCAAAGGCACCCTCTTTGGCCAAGCTTGGGATCATCCGGATGTGTCTACCGCGGCTTCACCACCTGACCTCAACGACAAACGCCAAGCCGAGCTGCACCCCAAGAATTACCAGTCCTACGTGGAGATTTTATCGATCGTTCTATCATACATGGTGAGAGGATTGCTCAACAAGATCGTCTCTCGATCTCTTTCTGTGGCAGGCAAATGGCAGCAGCAACAGCTCCGCCGTCTCAACGTCCATGAGTATCAGTGGAAGAGGTTTGGGAACATTCAAAAGCGGCTTAAAGGTGGAGTACACATAGTGAACGTGGAACAGGTTGAAGAGCTTGCTGGCAAGATGGTTGGGCAGATACTTGTCACTAAACAAACTGGTCCTCAGGGCAAAGTTGTCAGCAAGGTTTATCTGTGTGAGAAGTTGTCACTTATGAACGAAATGTACTTTGCTATCACTCTGGATCGTAAAATCTCAATGCAGGCCTATACTTCGTTTGGAGGAGGAGATGTTGCCCTCAAAGTGCCCGTGATGGTTCGGCTTGAAGAAGGTACAAATGTCGACCAAGGAAAAACAATTCTCAAGGTAAATCTGCGCTCTTTAAGATCTTGA

Coding sequence (CDS)

ATGCGTTTACCTCCTCGTAGATTAATGACCTCAGATGGGCCCAGTTCCAGGCCCAATAAGAGGAAAGAGAGAAAGGGCTTTGATGATGAGGCCCACCAACTGTCATTCACAGCTAAAGTATCGAAGCCGACACCGCCTCAATCCAACCACCTCCTAGCCGGCTACTTAGCTCACGAGTTCTTCACCAAAGGCACCCTCTTTGGCCAAGCTTGGGATCATCCGGATGTGTCTACCGCGGCTTCACCACCTGACCTCAACGACAAACGCCAAGCCGAGCTGCACCCCAAGAATTACCAGTCCTACGTGGAGATTTTATCGATCGTTCTATCATACATGGTGAGAGGATTGCTCAACAAGATCGTCTCTCGATCTCTTTCTGTGGCAGGCAAATGGCAGCAGCAACAGCTCCGCCGTCTCAACGTCCATGAGTATCAGTGGAAGAGGTTTGGGAACATTCAAAAGCGGCTTAAAGGTGGAGTACACATAGTGAACGTGGAACAGGTTGAAGAGCTTGCTGGCAAGATGGTTGGGCAGATACTTGTCACTAAACAAACTGGTCCTCAGGGCAAAGTTGTCAGCAAGGTTTATCTGTGTGAGAAGTTGTCACTTATGAACGAAATGTACTTTGCTATCACTCTGGATCGTAAAATCTCAATGCAGGCCTATACTTCGTTTGGAGGAGGAGATGTTGCCCTCAAAGTGCCCGTGATGGTTCGGCTTGAAGAAGGTACAAATGTCGACCAAGGAAAAACAATTCTCAAGGTAAATCTGCGCTCTTTAAGATCTTGA

Protein sequence

MRLPPRRLMTSDGPSSRPNKRKERKGFDDEAHQLSFTAKVSKPTPPQSNHLLAGYLAHEFFTKGTLFGQAWDHPDVSTAASPPDLNDKRQAELHPKNYQSYVEILSIVLSYMVRGLLNKIVSRSLSVAGKWQQQQLRRLNVHEYQWKRFGNIQKRLKGGVHIVNVEQVEELAGKMVGQILVTKQTGPQGKVVSKVYLCEKLSLMNEMYFAITLDRKISMQAYTSFGGGDVALKVPVMVRLEEGTNVDQGKTILKVNLRSLRS

Homology

[Close]

BLAST of Cp4.1LG12g10140 vs. Swiss-Prot
Match: SUCB_ORYSJ (Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Oryza sativa subsp. japonica GN=Os02g0621700 PE=1 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.0e-22
Identity = 57/94 (60.64%), Postives = 67/94 (71.28%), Query Frame = 1


Query: 150 GNIQKRLKGGVHIVNVEQVEELAGKMVGQILVTKQTGPQGKVVSKVYLCEKLSLMNEMYF 209
           G  +  L+GGVHIV  E+ E LA KM+GQILVTKQTGPQGK+VSKVYLCEKLSL+NEMYF
Sbjct: 86  GTFKSGLQGGVHIVKAEEAESLAAKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYF 145

Query: 210 AITLDRKISMQAYTSFGGG-----DVALKVPVMV 239
           AITLDR  +     +   G     D+A K P M+
Sbjct: 146 AITLDRNTAGPLIIACSKGGTSIEDLAEKYPDMI 179

[Close]

BLAST of Cp4.1LG12g10140 vs. Swiss-Prot
Match: SUCB_ARATH (Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Arabidopsis thaliana GN=At2g20420 PE=1 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.0e-22
Identity = 57/94 (60.64%), Postives = 69/94 (73.40%), Query Frame = 1


Query: 150 GNIQKRLKGGVHIVNVEQVEELAGKMVGQILVTKQTGPQGKVVSKVYLCEKLSLMNEMYF 209
           G  +  LKGGVHIV  ++ EE+AGKM+GQ+LVTKQTGPQGKVVSKVYLCEKLSL+NEMYF
Sbjct: 85  GTFKSGLKGGVHIVKRDEAEEIAGKMLGQVLVTKQTGPQGKVVSKVYLCEKLSLVNEMYF 144

Query: 210 AITLDRKISMQAYTSFGGG-----DVALKVPVMV 239
           +I LDRK +     +   G     D+A K P M+
Sbjct: 145 SIILDRKSAGPLIIACKKGGTSIEDLAEKFPDMI 178

[Close]

BLAST of Cp4.1LG12g10140 vs. Swiss-Prot
Match: SUCB_SOLLC (Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.0e-22
Identity = 73/179 (40.78%), Postives = 96/179 (53.63%), Query Frame = 1


Query: 116 LLNKIVSRSLSVAGKWQQQQLRRLNVHEYQ----WKRFG-NIQKRLKGGVHIVNVEQV-- 175
           +L K+ ++SLSVAGKWQQQQLRRLN+HEYQ      ++G N+ K    GV + ++++V  
Sbjct: 1   MLRKLANQSLSVAGKWQQQQLRRLNIHEYQGAELMSKYGINVPK----GVAVASLDEVKK 60

Query: 176 --------------------------------------------EELAGKMVGQILVTKQ 235
                                                       E++A KM+GQILVTKQ
Sbjct: 61  AIQDVFPNQSEVVVKSQVLAGGRGLGTFKNGFQGGVHIVKADQAEDIASKMLGQILVTKQ 120

Query: 236 TGPQGKVVSKVYLCEKLSLMNEMYFAITLDRKISMQAYTSFGGG-----DVALKVPVMV 239
           TG QGKVVSKVYLCEK+SL+NEMYF+I LDR  +     +   G     D+A K P M+
Sbjct: 121 TGAQGKVVSKVYLCEKMSLVNEMYFSIILDRATAGPLIIACRKGGTSIEDLAEKFPDMI 175

[Close]

BLAST of Cp4.1LG12g10140 vs. Swiss-Prot
Match: SUCC_AKKM8 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Akkermansia muciniphila (strain ATCC BAA-835 / Muc) GN=sucC PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.7e-12
Identity = 38/67 (56.72%), Postives = 49/67 (73.13%), Query Frame = 1


Query: 150 GNIQKRLKGGVHIV-NVEQVEELAGKMVGQILVTKQTGPQGKVVSKVYLCEKLSLMNEMY 209
           G  +   KGGVH+V +VE+VEE+AGKM+ Q+LVTKQTG  GK+VSK+ + E + L  E Y
Sbjct: 57  GTFKNGFKGGVHVVKSVEEVEEVAGKMLNQVLVTKQTGEAGKLVSKIMVAEAVDLKKECY 116

Query: 210 FAITLDR 216
           FAI  DR
Sbjct: 117 FAILQDR 123

[Close]

BLAST of Cp4.1LG12g10140 vs. Swiss-Prot
Match: SUCB1_DICDI (Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Dictyostelium discoideum GN=scsC PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.5e-10
Identity = 43/89 (48.31%), Postives = 52/89 (58.43%), Query Frame = 1


Query: 156 LKGGVHIVN-VEQVEELAGKMVGQILVTKQTGPQGKVVSKVYLCEKLSLMNEMYFAITLD 215
           LKGGV + +  E V++ A KM+G  LVTKQTG  GKVV +VY+ E+  L  EMYFAI +D
Sbjct: 97  LKGGVQLCSSAEDVKKFASKMLGHTLVTKQTGEDGKVVHQVYVTERHFLRKEMYFAILMD 156

Query: 216 RKISMQAYTSFGGGDVALKVPVMVRLEEG 244
           RK          GG      PVMV   EG
Sbjct: 157 RK---------AGG------PVMVASPEG 170

[Close]

BLAST of Cp4.1LG12g10140 vs. TrEMBL
Match: V7BGA6_PHAVU (Succinyl-CoA ligase subunit beta OS=Phaseolus vulgaris GN=PHAVU_007G190800g PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.3e-27
Identity = 86/179 (48.04%), Postives = 100/179 (55.87%), Query Frame = 1


Query: 112 MVRGLLNKIVSRSLSVAGKWQQQQLRRLNVHEYQW-KRFGNIQKRLKGGVHIVNVE---- 171
           MVRGLLNK+VSRSLSVAGKWQ  QLRRLN+HEYQ  +  G     +  GV + +VE    
Sbjct: 1   MVRGLLNKLVSRSLSVAGKWQHHQLRRLNIHEYQGAELMGKHGVNVPRGVAVSSVEEARK 60

Query: 172 ------------------------------------------QVEELAGKMVGQILVTKQ 231
                                                     QVE+LAGKM+GQILVTKQ
Sbjct: 61  AIKDFFPNEKELVVKSQILAGGRGLGTFKSGLQGGVHIVKTDQVEDLAGKMLGQILVTKQ 120

Query: 232 TGPQGKVVSKVYLCEKLSLMNEMYFAITLDRKISMQAYTSFGGG-----DVALKVPVMV 239
           TGPQGK+VSKVYLCEKLSL+NEMYFAITLDR  +     +   G     D+A K P M+
Sbjct: 121 TGPQGKIVSKVYLCEKLSLVNEMYFAITLDRTTAGPIIIACSKGGTSIEDLAEKFPDMI 179

[Close]

BLAST of Cp4.1LG12g10140 vs. TrEMBL
Match: A5HIG2_9FABA (Succinyl-CoA ligase subunit beta OS=Caragana jubata PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.2e-27
Identity = 89/200 (44.50%), Postives = 107/200 (53.50%), Query Frame = 1


Query: 112 MVRGLLNKIVSRSLSVAGKWQQQQLRRLNVHEYQW-KRFGNIQKRLKGGVHIVNVEQVE- 171
           MVRGLLNK+VSRSLSVAGKWQ QQLRRLN+HEYQ  +        +  GV + ++E+V  
Sbjct: 1   MVRGLLNKLVSRSLSVAGKWQNQQLRRLNIHEYQGAELMSKYGVNVPRGVAVSSIEEVRK 60

Query: 172 ---------------------------------------------ELAGKMVGQILVTKQ 231
                                                        +LAGKM+GQILVTKQ
Sbjct: 61  AIKDVFANQNEVVVKSRILAGGRGLGTFKSGLQGGVHIVKTDQVEDLAGKMLGQILVTKQ 120

Query: 232 TGPQGKVVSKVYLCEKLSLMNEMYFAITLDRKISMQAYTSFGGG------------DVAL 253
           TGPQGKVVSKVYLCEKLSL+NEMYFAITLDRK +     +   G            D+ +
Sbjct: 121 TGPQGKVVSKVYLCEKLSLVNEMYFAITLDRKTAGPLIIACRKGGTSIEDLAEKFPDMII 180

[Close]

BLAST of Cp4.1LG12g10140 vs. TrEMBL
Match: A0A0D2PT96_GOSRA (Succinyl-CoA ligase subunit beta OS=Gossypium raimondii GN=B456_001G179900 PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.8e-27
Identity = 85/182 (46.70%), Postives = 105/182 (57.69%), Query Frame = 1


Query: 113 VRGLLNKIVSRSLSVAGKWQQQQLRRLNVHEYQ----WKRFG-NIQKRLKGGVHIVNVEQ 172
           +RGL+NK+VSRSLSVAGKWQQQQLRRLN+HEYQ      ++G N+ K    GV + ++++
Sbjct: 1   MRGLMNKLVSRSLSVAGKWQQQQLRRLNIHEYQGADLMNKYGINVPK----GVAVSSIDE 60

Query: 173 VEE----------------------------------------------LAGKMVGQILV 232
           V+E                                              +AGKM+GQILV
Sbjct: 61  VKEAVKSAFPNENELVVKSQILAGGRGLGTFQNGFKGGVHIVKADQIEDIAGKMLGQILV 120

Query: 233 TKQTGPQGKVVSKVYLCEKLSLMNEMYFAITLDRKISMQAYTSFGGG-----DVALKVPV 239
           TKQTGPQGKVVSKVYLCEKLSL+NEMYFAITLDRK +     +   G     D+A K P 
Sbjct: 121 TKQTGPQGKVVSKVYLCEKLSLVNEMYFAITLDRKTAGPLIIACSKGGTSIEDLAEKYPD 178

[Close]

BLAST of Cp4.1LG12g10140 vs. TrEMBL
Match: A0A061DQI7_THECC (Succinyl-CoA ligase subunit beta OS=Theobroma cacao GN=TCM_003964 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.9e-27
Identity = 86/182 (47.25%), Postives = 104/182 (57.14%), Query Frame = 1


Query: 113 VRGLLNKIVSRSLSVAGKWQQQQLRRLNVHEYQ----WKRFG-NIQKRLKGGVHIVNVE- 172
           +RG++NK+VSRSLSVAGKWQQQQLRRLN+HEYQ      ++G N+ K    GV + +V+ 
Sbjct: 1   MRGIVNKLVSRSLSVAGKWQQQQLRRLNIHEYQGAELMSKYGINVPK----GVAVSSVDE 60

Query: 173 ---------------------------------------------QVEELAGKMVGQILV 232
                                                        QVEE+AGKM+GQILV
Sbjct: 61  VKQAVKDAFPNQNELVVKSQILAGGRGLGTFQNGFKGGVHIVKADQVEEIAGKMLGQILV 120

Query: 233 TKQTGPQGKVVSKVYLCEKLSLMNEMYFAITLDRKISMQAYTSFGGG-----DVALKVPV 239
           TKQTGPQGKVVSKVYLCEKLSL+NEMYFAITLDR  +     +   G     D+A K P 
Sbjct: 121 TKQTGPQGKVVSKVYLCEKLSLVNEMYFAITLDRNTAGPLIIACRKGGTSIEDLAEKYPD 178

[Close]

BLAST of Cp4.1LG12g10140 vs. TrEMBL
Match: A0A067FB34_CITSI (Succinyl-CoA ligase subunit beta OS=Citrus sinensis GN=CISIN_1g014588mg PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 8.3e-27
Identity = 86/179 (48.04%), Postives = 103/179 (57.54%), Query Frame = 1


Query: 112 MVRGLLNKIVSRSLSVAGKWQQQQLRRLNVHEYQ----WKRFG-NIQKR----------- 171
           MVRGLLNK+VSRSL+VAG+WQQQQLRRLN+HEYQ      ++G N+ K            
Sbjct: 1   MVRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKK 60

Query: 172 ------------------LKGGVHIVNVE-------------QVEELAGKMVGQILVTKQ 231
                             L GG  +   +             +VE+LAGKM+GQILVTKQ
Sbjct: 61  AIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQ 120

Query: 232 TGPQGKVVSKVYLCEKLSLMNEMYFAITLDRKISMQAYTSFGGG-----DVALKVPVMV 239
           TGPQGK+VSKVYLCEKLSL+NEMYFAI LDRK +         G     D+A K P M+
Sbjct: 121 TGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMI 179

[Close]

BLAST of Cp4.1LG12g10140 vs. TAIR10
Match: AT2G20420.1 (AT2G20420.1 ATP citrate lyase (ACL) family protein)

HSP 1 Score: 107.1 bits (266), Expect = 1.7e-23
Identity = 57/94 (60.64%), Postives = 69/94 (73.40%), Query Frame = 1


Query: 150 GNIQKRLKGGVHIVNVEQVEELAGKMVGQILVTKQTGPQGKVVSKVYLCEKLSLMNEMYF 209
           G  +  LKGGVHIV  ++ EE+AGKM+GQ+LVTKQTGPQGKVVSKVYLCEKLSL+NEMYF
Sbjct: 85  GTFKSGLKGGVHIVKRDEAEEIAGKMLGQVLVTKQTGPQGKVVSKVYLCEKLSLVNEMYF 144

Query: 210 AITLDRKISMQAYTSFGGG-----DVALKVPVMV 239
           +I LDRK +     +   G     D+A K P M+
Sbjct: 145 SIILDRKSAGPLIIACKKGGTSIEDLAEKFPDMI 178

[Close]

BLAST of Cp4.1LG12g10140 vs. TAIR10
Match: AT1G04000.1 (AT1G04000.1 unknown protein)

HSP 1 Score: 55.1 bits (131), Expect = 7.7e-08
Identity = 43/135 (31.85%), Postives = 61/135 (45.19%), Query Frame = 1


Query: 1   MRLPPRRLMTSDGPSSRPNKRKERKGF-----DDEAHQLSFTAKVSKPTPPQSNHL---- 60
           MRLPPRR++T+D       KRKER  F     D+      F +   K  PP  N +    
Sbjct: 6   MRLPPRRVLTAD-------KRKERDAFISSVTDNPPEIAKFPSPPPKLVPPPVNPISKKS 65

Query: 61  --------------LAGYLAHEFFTKGTLFGQAWDHPDVSTAAS--PPDLNDKRQAELHP 111
                         LAGYL+HE+ T+GTLFG+ W+       +S   P    +   E  P
Sbjct: 66  STAAAEPIGSNQLMLAGYLSHEYLTQGTLFGEQWNQARAQAESSKIKPSHTVEPAEECEP 125

[Close]

BLAST of Cp4.1LG12g10140 vs. TAIR10
Match: AT5G44060.1 (AT5G44060.1 unknown protein)

HSP 1 Score: 51.6 bits (122), Expect = 8.5e-07
Identity = 41/125 (32.80%), Postives = 58/125 (46.40%), Query Frame = 1


Query: 1   MRLPPRRLMTSD-----------GPSSRPNKRKERKGFDDEAHQLSFTAKVSKPTPPQSN 60
           MRLPPRR+ +              P   P K   +K       + + TA V+   P  SN
Sbjct: 6   MRLPPRRVTSGAVAGKQTESAVINPPPPPTKSIVKK--TPIIPRPTTTATVALAEPVCSN 65

Query: 61  HLLAGYLAHEFFTKGTLFGQAWDHPDVS----TAASPPDLNDKRQAELHPKNY--QSYVE 109
            LLAGYLAHEF   GTLFG+ W+         T  S     +K   ++ P ++  + YVE
Sbjct: 66  QLLAGYLAHEFLNNGTLFGELWNPTKAQAGPLTTQSIDPRKNKPSHDIEPSDHKRRRYVE 125

[Close]

BLAST of Cp4.1LG12g10140 vs. NCBI nr
Match: gi|593688467|ref|XP_007144868.1| (hypothetical protein PHAVU_007G190800g [Phaseolus vulgaris])

HSP 1 Score: 131.7 bits (330), Expect = 1.8e-27
Identity = 86/179 (48.04%), Postives = 100/179 (55.87%), Query Frame = 1


Query: 112 MVRGLLNKIVSRSLSVAGKWQQQQLRRLNVHEYQW-KRFGNIQKRLKGGVHIVNVE---- 171
           MVRGLLNK+VSRSLSVAGKWQ  QLRRLN+HEYQ  +  G     +  GV + +VE    
Sbjct: 1   MVRGLLNKLVSRSLSVAGKWQHHQLRRLNIHEYQGAELMGKHGVNVPRGVAVSSVEEARK 60

Query: 172 ------------------------------------------QVEELAGKMVGQILVTKQ 231
                                                     QVE+LAGKM+GQILVTKQ
Sbjct: 61  AIKDFFPNEKELVVKSQILAGGRGLGTFKSGLQGGVHIVKTDQVEDLAGKMLGQILVTKQ 120

Query: 232 TGPQGKVVSKVYLCEKLSLMNEMYFAITLDRKISMQAYTSFGGG-----DVALKVPVMV 239
           TGPQGK+VSKVYLCEKLSL+NEMYFAITLDR  +     +   G     D+A K P M+
Sbjct: 121 TGPQGKIVSKVYLCEKLSLVNEMYFAITLDRTTAGPIIIACSKGGTSIEDLAEKFPDMI 179

[Close]

BLAST of Cp4.1LG12g10140 vs. NCBI nr
Match: gi|146215968|gb|ABQ10186.1| (succinyl-CoA ligase beta subunit [Caragana jubata])

HSP 1 Score: 131.0 bits (328), Expect = 3.1e-27
Identity = 89/200 (44.50%), Postives = 107/200 (53.50%), Query Frame = 1


Query: 112 MVRGLLNKIVSRSLSVAGKWQQQQLRRLNVHEYQW-KRFGNIQKRLKGGVHIVNVEQVE- 171
           MVRGLLNK+VSRSLSVAGKWQ QQLRRLN+HEYQ  +        +  GV + ++E+V  
Sbjct: 1   MVRGLLNKLVSRSLSVAGKWQNQQLRRLNIHEYQGAELMSKYGVNVPRGVAVSSIEEVRK 60

Query: 172 ---------------------------------------------ELAGKMVGQILVTKQ 231
                                                        +LAGKM+GQILVTKQ
Sbjct: 61  AIKDVFANQNEVVVKSRILAGGRGLGTFKSGLQGGVHIVKTDQVEDLAGKMLGQILVTKQ 120

Query: 232 TGPQGKVVSKVYLCEKLSLMNEMYFAITLDRKISMQAYTSFGGG------------DVAL 253
           TGPQGKVVSKVYLCEKLSL+NEMYFAITLDRK +     +   G            D+ +
Sbjct: 121 TGPQGKVVSKVYLCEKLSLVNEMYFAITLDRKTAGPLIIACRKGGTSIEDLAEKFPDMII 180

[Close]

BLAST of Cp4.1LG12g10140 vs. NCBI nr
Match: gi|823125305|ref|XP_012483708.1| (PREDICTED: succinyl-CoA ligase [ADP-forming])

HSP 1 Score: 130.6 bits (327), Expect = 4.1e-27
Identity = 85/182 (46.70%), Postives = 105/182 (57.69%), Query Frame = 1


Query: 113 VRGLLNKIVSRSLSVAGKWQQQQLRRLNVHEYQ----WKRFG-NIQKRLKGGVHIVNVEQ 172
           +RGL+NK+VSRSLSVAGKWQQQQLRRLN+HEYQ      ++G N+ K    GV + ++++
Sbjct: 1   MRGLMNKLVSRSLSVAGKWQQQQLRRLNIHEYQGADLMNKYGINVPK----GVAVSSIDE 60

Query: 173 VEE----------------------------------------------LAGKMVGQILV 232
           V+E                                              +AGKM+GQILV
Sbjct: 61  VKEAVKSAFPNENELVVKSQILAGGRGLGTFQNGFKGGVHIVKADQIEDIAGKMLGQILV 120

Query: 233 TKQTGPQGKVVSKVYLCEKLSLMNEMYFAITLDRKISMQAYTSFGGG-----DVALKVPV 239
           TKQTGPQGKVVSKVYLCEKLSL+NEMYFAITLDRK +     +   G     D+A K P 
Sbjct: 121 TKQTGPQGKVVSKVYLCEKLSLVNEMYFAITLDRKTAGPLIIACSKGGTSIEDLAEKYPD 178

[Close]

BLAST of Cp4.1LG12g10140 vs. NCBI nr
Match: gi|590715520|ref|XP_007050219.1| (ATP citrate lyase (ACL) family protein [Theobroma cacao])

HSP 1 Score: 129.8 bits (325), Expect = 7.0e-27
Identity = 86/182 (47.25%), Postives = 104/182 (57.14%), Query Frame = 1


Query: 113 VRGLLNKIVSRSLSVAGKWQQQQLRRLNVHEYQ----WKRFG-NIQKRLKGGVHIVNVE- 172
           +RG++NK+VSRSLSVAGKWQQQQLRRLN+HEYQ      ++G N+ K    GV + +V+ 
Sbjct: 1   MRGIVNKLVSRSLSVAGKWQQQQLRRLNIHEYQGAELMSKYGINVPK----GVAVSSVDE 60

Query: 173 ---------------------------------------------QVEELAGKMVGQILV 232
                                                        QVEE+AGKM+GQILV
Sbjct: 61  VKQAVKDAFPNQNELVVKSQILAGGRGLGTFQNGFKGGVHIVKADQVEEIAGKMLGQILV 120

Query: 233 TKQTGPQGKVVSKVYLCEKLSLMNEMYFAITLDRKISMQAYTSFGGG-----DVALKVPV 239
           TKQTGPQGKVVSKVYLCEKLSL+NEMYFAITLDR  +     +   G     D+A K P 
Sbjct: 121 TKQTGPQGKVVSKVYLCEKLSLVNEMYFAITLDRNTAGPLIIACRKGGTSIEDLAEKYPD 178

[Close]

BLAST of Cp4.1LG12g10140 vs. NCBI nr
Match: gi|641841500|gb|KDO60412.1| (hypothetical protein CISIN_1g014588mg [Citrus sinensis])

HSP 1 Score: 129.0 bits (323), Expect = 1.2e-26
Identity = 86/179 (48.04%), Postives = 103/179 (57.54%), Query Frame = 1


Query: 112 MVRGLLNKIVSRSLSVAGKWQQQQLRRLNVHEYQ----WKRFG-NIQKR----------- 171
           MVRGLLNK+VSRSL+VAG+WQQQQLRRLN+HEYQ      ++G N+ K            
Sbjct: 1   MVRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKK 60

Query: 172 ------------------LKGGVHIVNVE-------------QVEELAGKMVGQILVTKQ 231
                             L GG  +   +             +VE+LAGKM+GQILVTKQ
Sbjct: 61  AIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQ 120

Query: 232 TGPQGKVVSKVYLCEKLSLMNEMYFAITLDRKISMQAYTSFGGG-----DVALKVPVMV 239
           TGPQGK+VSKVYLCEKLSL+NEMYFAI LDRK +         G     D+A K P M+
Sbjct: 121 TGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMI 179

The following BLAST results are available for this feature:

BLAST of Cp4.1LG12g10140 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SUCB_ORYSJ	3.0e-22	60.64	Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Oryza sativa su...	[more]
SUCB_ARATH	3.0e-22	60.64	Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Arabidopsis tha...	[more]
SUCB_SOLLC	4.0e-22	40.78	Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Solanum lycoper...	[more]
SUCC_AKKM8	1.7e-12	56.72	Succinyl-CoA ligase [ADP-forming] subunit beta OS=Akkermansia muciniphila (strai...	[more]
SUCB1_DICDI	3.5e-10	48.31	Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Dictyostelium d...	[more]

BLAST of Cp4.1LG12g10140 vs. TrEMBL


Match Name	E-value	Identity	Description
V7BGA6_PHAVU	1.3e-27	48.04	Succinyl-CoA ligase subunit beta OS=Phaseolus vulgaris GN=PHAVU_007G190800g PE=3...	[more]
A5HIG2_9FABA	2.2e-27	44.50	Succinyl-CoA ligase subunit beta OS=Caragana jubata PE=2 SV=1	[more]
A0A0D2PT96_GOSRA	2.8e-27	46.70	Succinyl-CoA ligase subunit beta OS=Gossypium raimondii GN=B456_001G179900 PE=3 ...	[more]
A0A061DQI7_THECC	4.9e-27	47.25	Succinyl-CoA ligase subunit beta OS=Theobroma cacao GN=TCM_003964 PE=3 SV=1	[more]
A0A067FB34_CITSI	8.3e-27	48.04	Succinyl-CoA ligase subunit beta OS=Citrus sinensis GN=CISIN_1g014588mg PE=3 SV=...	[more]

BLAST of Cp4.1LG12g10140 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G20420.1	1.7e-23	60.64	ATP citrate lyase (ACL) family protein	[more]
AT1G04000.1	7.7e-08	31.85	unknown protein	[more]
AT5G44060.1	8.5e-07	32.80	unknown protein	[more]

BLAST of Cp4.1LG12g10140 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|593688467\|ref\|XP_007144868.1\|	1.8e-27	48.04	hypothetical protein PHAVU_007G190800g [Phaseolus vulgaris]	[more]
gi\|146215968\|gb\|ABQ10186.1\|	3.1e-27	44.50	succinyl-CoA ligase beta subunit [Caragana jubata]	[more]
gi\|823125305\|ref\|XP_012483708.1\|	4.1e-27	46.70	PREDICTED: succinyl-CoA ligase [ADP-forming]	[more]
gi\|590715520\|ref\|XP_007050219.1\|	7.0e-27	47.25	ATP citrate lyase (ACL) family protein [Theobroma cacao]	[more]
gi\|641841500\|gb\|KDO60412.1\|	1.2e-26	48.04	hypothetical protein CISIN_1g014588mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding
GO:0003824	catalytic activity

Vocabulary: **Biological Process**
Term	Definition
GO:0008152	metabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR013816	ATP-grasp fold, subdomain 2
IPR013815	ATP_grasp_subdomain_1
IPR013650	ATP-grasp_succ-CoA_synth-type
IPR005809	Succ_CoA_synthase_bsu

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0009853	photorespiration
biological_process	GO:0006099	tricarboxylic acid cycle
biological_process	GO:0008152	metabolic process
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0009651	response to salt stress
biological_process	GO:0051788	response to misfolded protein
biological_process	GO:0071704	organic substance metabolic process
biological_process	GO:0080129	proteasome core complex assembly
biological_process	GO:0019243	methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
biological_process	GO:0006096	glycolytic process
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0008150	biological_process
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0016829	lyase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG12g10140.1	Cp4.1LG12g10140.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005809	Succinyl-CoA synthetase, beta subunit	PANTHER	PTHR11815	SUCCINYL-COA SYNTHETASE BETA CHAIN	coord: 107..216 score: 1.2
IPR013650	ATP-grasp fold, succinyl-CoA synthetase-type	PFAM	PF08442	ATP-grasp_2	coord: 158..221 score: 9.5
IPR013815	ATP-grasp fold, subdomain 1	GENE3D	G3DSA:3.30.1490.20		coord: 158..193 score: 1.3
IPR013816	ATP-grasp fold, subdomain 2	GENE3D	G3DSA:3.30.470.20		coord: 194..230 score: 9.
None	No IPR available	PANTHER	PTHR11815:SF1	SUCCINYL-COA LIGASE [ADP-FORMING] SUBUNIT BETA, MITOCHONDRIAL	coord: 107..216 score: 1.2
None	No IPR available	unknown	SSF56059	Glutathione synthetase ATP-binding domain-like	coord: 150..238 score: 3.06

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG12g10140	Cucsa.348960	Cucumber (Gy14) v1	cgycpeB0907
Cp4.1LG12g10140	CmaCh17G013810	Cucurbita maxima (Rimu)	cmacpeB371
Cp4.1LG12g10140	CmoCh17G013350	Cucurbita moschata (Rifu)	cmocpeB335
Cp4.1LG12g10140	CmoCh08G000390	Cucurbita moschata (Rifu)	cmocpeB841
Cp4.1LG12g10140	Cla007072	Watermelon (97103) v1	cpewmB156
Cp4.1LG12g10140	Csa6G088100	Cucumber (Chinese Long) v2	cpecuB142
Cp4.1LG12g10140	MELO3C022382	Melon (DHL92) v3.5.1	cpemeB114
Cp4.1LG12g10140	ClCG06G001520	Watermelon (Charleston Gray)	cpewcgB140
Cp4.1LG12g10140	CSPI06G07080	Wild cucumber (PI 183967)	cpecpiB144
Cp4.1LG12g10140	Lsi09G017930	Bottle gourd (USVL1VR-Ls)	cpelsiB103
Cp4.1LG12g10140	MELO3C022382.2	Melon (DHL92) v3.6.1	cpemedB140
Cp4.1LG12g10140	CsaV3_6G007480	Cucumber (Chinese Long) v3	cpecucB0166
Cp4.1LG12g10140	Bhi12G002095	Wax gourd	cpewgoB0175
Cp4.1LG12g10140	CsGy6G007090	Cucumber (Gy14) v2	cgybcpeB722
Cp4.1LG12g10140	Carg03792	Silver-seed gourd	carcpeB1355
Cp4.1LG12g10140	Carg11546	Silver-seed gourd	carcpeB0018

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG12g10140	Cp4.1LG17g09560	Cucurbita pepo (Zucchini)	cpecpeB170

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG12g10140	Cucurbita maxima (Rimu)	cmacpeB905