ClCG06G001520 (gene) Watermelon (Charleston Gray)

NameClCG06G001520
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionEmbryo sac development arrest 6 protein
LocationCG_Chr06 : 1563840 .. 1564205 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGTCACCCAGGCCCAATAAGAGAAAAGAAAGAGAGGGCCTTGATGATGAGGCCCACCAACTATCATTAACGGCTAAAGTACCGAGGCAGCCGCCGCCGTCTCATGCGAACCAGCTCTTAGCCGGCTACTTGGCTCACGAGTTCCTCACTAAAGGGACTCTCTTCGGCCAGGCTTGGGATCCTGATCTTCCGGATCCGACTATGGCTTCTTCACTCCCTGAGCCAAGCGAGAAACGCCAAGCCGAACTGCACCTCAAGAGTTACCAATCCTACGTGGAGGTAGCTAATTTGTTGAAACATAGTGGGCCCCACTTTCAAGGTATTGTAAATCCCACCCAGCTAGCTCACTTGCTAAACTTATGA

mRNA sequence

ATGACGTCACCCAGGCCCAATAAGAGAAAAGAAAGAGAGGGCCTTGATGATGAGGCCCACCAACTATCATTAACGGCTAAAGTACCGAGGCAGCCGCCGCCGTCTCATGCGAACCAGCTCTTAGCCGGCTACTTGGCTCACGAGTTCCTCACTAAAGGGACTCTCTTCGGCCAGGCTTGGGATCCTGATCTTCCGGATCCGACTATGGCTTCTTCACTCCCTGAGCCAAGCGAGAAACGCCAAGCCGAACTGCACCTCAAGAGTTACCAATCCTACGTGGAGGTAGCTAATTTGTTGAAACATAGTGGGCCCCACTTTCAAGGTATTGTAAATCCCACCCAGCTAGCTCACTTGCTAAACTTATGA

Coding sequence (CDS)

ATGACGTCACCCAGGCCCAATAAGAGAAAAGAAAGAGAGGGCCTTGATGATGAGGCCCACCAACTATCATTAACGGCTAAAGTACCGAGGCAGCCGCCGCCGTCTCATGCGAACCAGCTCTTAGCCGGCTACTTGGCTCACGAGTTCCTCACTAAAGGGACTCTCTTCGGCCAGGCTTGGGATCCTGATCTTCCGGATCCGACTATGGCTTCTTCACTCCCTGAGCCAAGCGAGAAACGCCAAGCCGAACTGCACCTCAAGAGTTACCAATCCTACGTGGAGGTAGCTAATTTGTTGAAACATAGTGGGCCCCACTTTCAAGGTATTGTAAATCCCACCCAGCTAGCTCACTTGCTAAACTTATGA

Protein sequence

MTSPRPNKRKEREGLDDEAHQLSLTAKVPRQPPPSHANQLLAGYLAHEFLTKGTLFGQAWDPDLPDPTMASSLPEPSEKRQAELHLKSYQSYVEVANLLKHSGPHFQGIVNPTQLAHLLNL
BLAST of ClCG06G001520 vs. TrEMBL
Match: A0A0A0KDC0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G088100 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.1e-37
Identity = 97/151 (64.24%), Postives = 102/151 (67.55%), Query Frame = 1

Query: 1   MTSPRPN-KRKEREGLD-----DEAHQLSLTAKVPRQPPPSHANQLLAGYLAHEFLTKGT 60
           MTSPRPN KRKEREGLD     DEAHQL LTAKVP+  P  H+ QLLAGYLAHEFLTKGT
Sbjct: 18  MTSPRPNNKRKEREGLDYDDDDDEAHQLPLTAKVPKPTPTPHSKQLLAGYLAHEFLTKGT 77

Query: 61  LFGQAWDPDLPDP-------TMASS-------------LPEPSEKRQAELHL----KSYQ 120
           LFGQ WD   PDP        MASS               EP EKRQAE  L    K+YQ
Sbjct: 78  LFGQTWDN--PDPAANANANAMASSSSSFSSFSSSPPLTTEPQEKRQAEAQLHHPKKNYQ 137

Query: 121 SYVEVANLLKHSGPHFQGIVNPTQLAHLLNL 122
           SYVEVANLLKH+GPH +GIVNPTQLA  LNL
Sbjct: 138 SYVEVANLLKHNGPHLEGIVNPTQLARFLNL 166

BLAST of ClCG06G001520 vs. TrEMBL
Match: A0A0D2N9W4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G255300 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 5.4e-21
Identity = 65/128 (50.78%), Postives = 77/128 (60.16%), Query Frame = 1

Query: 7   NKRKEREGLDDEAHQLSLTAK----VPRQPPPSHANQLLAGYLAHEFLTKGTLFGQAWDP 66
           NKRKER+G D +  Q SL       +P  PPP  +N LLAGYLAHEFLT GTLFGQ WDP
Sbjct: 20  NKRKERDGFDLKP-QTSLPPSSKPPMPTAPPPLLSNHLLAGYLAHEFLTNGTLFGQPWDP 79

Query: 67  DLPDPTMASS------LPEPSEKR---QAELHLKSYQSYVEVANLLKHSGPHFQGIVNPT 122
             P  + A S        EP+++     AE   K +Q YVEVA+LLK  G H  GIVNPT
Sbjct: 80  TRPQQSPAESSKGIREKAEPNDRSAAGDAEPKPKKHQRYVEVASLLKTDGAHLPGIVNPT 139

BLAST of ClCG06G001520 vs. TrEMBL
Match: M5VP77_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012995mg PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.6e-20
Identity = 60/125 (48.00%), Postives = 74/125 (59.20%), Query Frame = 1

Query: 7   NKRKEREGLDDEAHQLSLTAKVPRQPPP----------SHANQLLAGYLAHEFLTKGTLF 66
           NKRKE+E   D  HQ + T  +   PPP          + ++QLLAGYLAHEFLTKGTL 
Sbjct: 22  NKRKEKESGFDALHQSTTTKMLKLAPPPQAGSNSPPEPASSDQLLAGYLAHEFLTKGTLL 81

Query: 67  GQAWDPDLPDPTMASSLPEPSEKRQAELHLKSYQSYVEVANLLKHSGPHFQGIVNPTQLA 122
           GQ+WD    +P       E      AE +L++ + YVEVA+LLK  G H  GIVNPTQLA
Sbjct: 82  GQSWDTYKAEPAPGPPGDEAEPSSGAEPNLENLERYVEVADLLKTDGAHLAGIVNPTQLA 141

BLAST of ClCG06G001520 vs. TrEMBL
Match: B9GRX5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s26110g PE=4 SV=2)

HSP 1 Score: 99.4 bits (246), Expect = 3.2e-18
Identity = 56/129 (43.41%), Postives = 73/129 (56.59%), Query Frame = 1

Query: 6   PNKRKEREGLDDEAHQLSLTAKVPRQPPPSH--------ANQLLAGYLAHEFLTKGTLFG 65
           P+KRKEREG D            P  P  S         +NQLLAGYLAHE+LTKGTLFG
Sbjct: 16  PSKRKEREGPDTLKPSTPTKLTKPASPRASSEKGLDSASSNQLLAGYLAHEYLTKGTLFG 75

Query: 66  QAWDPDLPDPTMASSLP-----EPSEKRQAELHLKSYQSYVEVANLLKHSGPHFQGIVNP 122
           Q W+P   +    S +      +P+ K ++E +  +Y+ YVEV+ LLK  GP+   I+NP
Sbjct: 76  QPWEPARAESVPVSGVDSVGVVKPARKAESEPNKDNYERYVEVSRLLKIGGPNIPDIINP 135

BLAST of ClCG06G001520 vs. TrEMBL
Match: A0A067K2K6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17658 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.7e-17
Identity = 57/130 (43.85%), Postives = 79/130 (60.77%), Query Frame = 1

Query: 7   NKRKEREGLDD--EAHQLSLTAKVPRQPPPS----------HANQLLAGYLAHEFLTKGT 66
           NKRKEREG D    +     T K+P+   P            +NQLLAGYLA+E+LTKGT
Sbjct: 17  NKRKEREGFDSLKPSPPSPPTTKIPKPNAPEAGSGNLAEPISSNQLLAGYLAYEYLTKGT 76

Query: 67  LFGQAWDPDLPDPT--MASSLPEPS-EKRQAELHLKSYQSYVEVANLLKHSGPHFQGIVN 122
           L+GQ W+    +P   M S   EP+ E  +AE +  +YQ+Y+EV++LLK  G H  G+VN
Sbjct: 77  LYGQPWERAGAEPVVGMESKNVEPNQEVEEAEPNKGNYQTYMEVSSLLKADGAHLPGVVN 136

BLAST of ClCG06G001520 vs. TAIR10
Match: AT5G44060.1 (AT5G44060.1 unknown protein)

HSP 1 Score: 79.3 bits (194), Expect = 1.8e-15
Identity = 43/92 (46.74%), Postives = 52/92 (56.52%), Query Frame = 1

Query: 34  PSHANQLLAGYLAHEFLTKGTLFGQAWDPDLPD--PTMASSLPEPSEKRQAELHLKSY-- 93
           P  +NQLLAGYLAHEFL  GTLFG+ W+P      P    S+     K   ++    +  
Sbjct: 59  PVCSNQLLAGYLAHEFLNNGTLFGELWNPTKAQAGPLTTQSIDPRKNKPSHDIEPSDHKR 118

Query: 94  QSYVEVANLLKHSGPHFQGIVNPTQLAHLLNL 122
           + YVEVAN+L+  G H  GIVNP+QLA  L L
Sbjct: 119 RRYVEVANILRVDGTHLPGIVNPSQLARFLKL 150

BLAST of ClCG06G001520 vs. TAIR10
Match: AT1G04000.1 (AT1G04000.1 unknown protein)

HSP 1 Score: 69.3 bits (168), Expect = 1.8e-12
Identity = 50/137 (36.50%), Postives = 62/137 (45.26%), Query Frame = 1

Query: 7   NKRKEREG-LDDEAHQLSLTAKVPRQPP--------------------PSHANQL-LAGY 66
           +KRKER+  +          AK P  PP                    P  +NQL LAGY
Sbjct: 17  DKRKERDAFISSVTDNPPEIAKFPSPPPKLVPPPVNPISKKSSTAAAEPIGSNQLMLAGY 76

Query: 67  LAHEFLTKGTLFGQAWDPDLPDPTMASSLPEPSEKRQAELHLKSYQSYVEVANLLKHSGP 122
           L+HE+LT+GTLFG+ W+        +   P  + +   E   K  + Y EVANLL+  G 
Sbjct: 77  LSHEYLTQGTLFGEQWNQARAQAESSKIKPSHTVEPAEECEPKR-KRYREVANLLRSDGA 136

BLAST of ClCG06G001520 vs. TAIR10
Match: AT3G23440.1 (AT3G23440.1 embryo sac development arrest 6)

HSP 1 Score: 62.4 bits (150), Expect = 2.2e-10
Identity = 36/84 (42.86%), Postives = 48/84 (57.14%), Query Frame = 1

Query: 38  NQLLAGYLAHEFLTKGTLFGQAWDPDLPDPTMASSLPEPSEKRQAELHLKSYQSYVEVAN 97
           N LLAGY+AHE+LT GT+ G+       +     S P P + R+ +   K+ QSY EVA+
Sbjct: 29  NWLLAGYMAHEYLTCGTMLGRKLYSGWAEVGPLVS-PSPLQSREVK---KARQSYSEVAS 88

Query: 98  LLKHSGPHFQGIVNPTQLAHLLNL 122
           + K  G H  G+VNPTQLA  + +
Sbjct: 89  VFKTDGNHVPGVVNPTQLAKWIQM 108

BLAST of ClCG06G001520 vs. NCBI nr
Match: gi|778711659|ref|XP_011656778.1| (PREDICTED: uncharacterized protein LOC105435768 [Cucumis sativus])

HSP 1 Score: 164.1 bits (414), Expect = 1.5e-37
Identity = 97/151 (64.24%), Postives = 102/151 (67.55%), Query Frame = 1

Query: 1   MTSPRPN-KRKEREGLD-----DEAHQLSLTAKVPRQPPPSHANQLLAGYLAHEFLTKGT 60
           MTSPRPN KRKEREGLD     DEAHQL LTAKVP+  P  H+ QLLAGYLAHEFLTKGT
Sbjct: 18  MTSPRPNNKRKEREGLDYDDDDDEAHQLPLTAKVPKPTPTPHSKQLLAGYLAHEFLTKGT 77

Query: 61  LFGQAWDPDLPDP-------TMASS-------------LPEPSEKRQAELHL----KSYQ 120
           LFGQ WD   PDP        MASS               EP EKRQAE  L    K+YQ
Sbjct: 78  LFGQTWDN--PDPAANANANAMASSSSSFSSFSSSPPLTTEPQEKRQAEAQLHHPKKNYQ 137

Query: 121 SYVEVANLLKHSGPHFQGIVNPTQLAHLLNL 122
           SYVEVANLLKH+GPH +GIVNPTQLA  LNL
Sbjct: 138 SYVEVANLLKHNGPHLEGIVNPTQLARFLNL 166

BLAST of ClCG06G001520 vs. NCBI nr
Match: gi|659119983|ref|XP_008459949.1| (PREDICTED: uncharacterized protein LOC103498915 [Cucumis melo])

HSP 1 Score: 157.1 bits (396), Expect = 1.9e-35
Identity = 94/154 (61.04%), Postives = 102/154 (66.23%), Query Frame = 1

Query: 1   MTSPRPN------KRKEREGLDDE--------AHQLSLTAKVPRQPPPSHANQLLAGYLA 60
           MTSPRPN      KRKEREGLDD+        AHQLS TAKVP  P   H+ QLLAGYLA
Sbjct: 18  MTSPRPNNNNNNNKRKEREGLDDDDHHDDDEAAHQLSFTAKVPTPP---HSKQLLAGYLA 77

Query: 61  HEFLTKGTLFGQAWDPDLPDPTMASSLPEPS----------------EKRQAEL---HLK 120
           HEFLTKGTLFGQ WD + PDP  A+++  PS                EKRQA+    H K
Sbjct: 78  HEFLTKGTLFGQTWDNN-PDPAAANAIAMPSSSSCYYYYSLTTTEAQEKRQAQAELHHHK 137

Query: 121 SYQSYVEVANLLKHSGPHFQGIVNPTQLAHLLNL 122
           +YQSYVEVANLLKHSG H QGIVNPTQLA LLNL
Sbjct: 138 NYQSYVEVANLLKHSGSHLQGIVNPTQLARLLNL 167

BLAST of ClCG06G001520 vs. NCBI nr
Match: gi|645259985|ref|XP_008235622.1| (PREDICTED: uncharacterized protein LOC103334434 [Prunus mume])

HSP 1 Score: 111.7 bits (278), Expect = 9.1e-22
Identity = 62/125 (49.60%), Postives = 73/125 (58.40%), Query Frame = 1

Query: 7   NKRKEREGLDDEAHQLSLTAKVPRQPPPSHAN----------QLLAGYLAHEFLTKGTLF 66
           NKRKE+E   D  HQ + T  +   PPP   +          QLLAGYLAHEFLTKGTL 
Sbjct: 22  NKRKEKESGFDALHQSTTTKMLKLAPPPQAGSNSPPEPASSAQLLAGYLAHEFLTKGTLL 81

Query: 67  GQAWDPDLPDPTMASSLPEPSEKRQAELHLKSYQSYVEVANLLKHSGPHFQGIVNPTQLA 122
           GQ+WD    +P    S  E      AE HL++ + YVEVA+LLK  G H  GIVNPTQLA
Sbjct: 82  GQSWDTSKAEPAPGPSGDEAEPSSGAEPHLENLERYVEVADLLKTDGAHLAGIVNPTQLA 141

BLAST of ClCG06G001520 vs. NCBI nr
Match: gi|823128491|ref|XP_012443021.1| (PREDICTED: uncharacterized protein LOC105767949 [Gossypium raimondii])

HSP 1 Score: 108.6 bits (270), Expect = 7.7e-21
Identity = 65/128 (50.78%), Postives = 77/128 (60.16%), Query Frame = 1

Query: 7   NKRKEREGLDDEAHQLSLTAK----VPRQPPPSHANQLLAGYLAHEFLTKGTLFGQAWDP 66
           NKRKER+G D +  Q SL       +P  PPP  +N LLAGYLAHEFLT GTLFGQ WDP
Sbjct: 20  NKRKERDGFDLKP-QTSLPPSSKPPMPTAPPPLLSNHLLAGYLAHEFLTNGTLFGQPWDP 79

Query: 67  DLPDPTMASS------LPEPSEKR---QAELHLKSYQSYVEVANLLKHSGPHFQGIVNPT 122
             P  + A S        EP+++     AE   K +Q YVEVA+LLK  G H  GIVNPT
Sbjct: 80  TRPQQSPAESSKGIREKAEPNDRSAAGDAEPKPKKHQRYVEVASLLKTDGAHLPGIVNPT 139

BLAST of ClCG06G001520 vs. NCBI nr
Match: gi|595801659|ref|XP_007201858.1| (hypothetical protein PRUPE_ppa012995mg [Prunus persica])

HSP 1 Score: 107.1 bits (266), Expect = 2.2e-20
Identity = 60/125 (48.00%), Postives = 74/125 (59.20%), Query Frame = 1

Query: 7   NKRKEREGLDDEAHQLSLTAKVPRQPPP----------SHANQLLAGYLAHEFLTKGTLF 66
           NKRKE+E   D  HQ + T  +   PPP          + ++QLLAGYLAHEFLTKGTL 
Sbjct: 22  NKRKEKESGFDALHQSTTTKMLKLAPPPQAGSNSPPEPASSDQLLAGYLAHEFLTKGTLL 81

Query: 67  GQAWDPDLPDPTMASSLPEPSEKRQAELHLKSYQSYVEVANLLKHSGPHFQGIVNPTQLA 122
           GQ+WD    +P       E      AE +L++ + YVEVA+LLK  G H  GIVNPTQLA
Sbjct: 82  GQSWDTYKAEPAPGPPGDEAEPSSGAEPNLENLERYVEVADLLKTDGAHLAGIVNPTQLA 141

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KDC0_CUCSA1.1e-3764.24Uncharacterized protein OS=Cucumis sativus GN=Csa_6G088100 PE=4 SV=1[more]
A0A0D2N9W4_GOSRA5.4e-2150.78Uncharacterized protein OS=Gossypium raimondii GN=B456_001G255300 PE=4 SV=1[more]
M5VP77_PRUPE1.6e-2048.00Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012995mg PE=4 SV=1[more]
B9GRX5_POPTR3.2e-1843.41Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s26110g PE=4 SV=2[more]
A0A067K2K6_JATCU2.7e-1743.85Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17658 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G44060.11.8e-1546.74 unknown protein[more]
AT1G04000.11.8e-1236.50 unknown protein[more]
AT3G23440.12.2e-1042.86 embryo sac development arrest 6[more]
Match NameE-valueIdentityDescription
gi|778711659|ref|XP_011656778.1|1.5e-3764.24PREDICTED: uncharacterized protein LOC105435768 [Cucumis sativus][more]
gi|659119983|ref|XP_008459949.1|1.9e-3561.04PREDICTED: uncharacterized protein LOC103498915 [Cucumis melo][more]
gi|645259985|ref|XP_008235622.1|9.1e-2249.60PREDICTED: uncharacterized protein LOC103334434 [Prunus mume][more]
gi|823128491|ref|XP_012443021.1|7.7e-2150.78PREDICTED: uncharacterized protein LOC105767949 [Gossypium raimondii][more]
gi|595801659|ref|XP_007201858.1|2.2e-2048.00hypothetical protein PRUPE_ppa012995mg [Prunus persica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008152 metabolic process
biological_process GO:0044237 cellular metabolic process
biological_process GO:0071704 organic substance metabolic process
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0009561 megagametogenesis
cellular_component GO:0005575 cellular_component
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003674 molecular_function
molecular_function GO:0005524 ATP binding
molecular_function GO:0005507 copper ion binding
molecular_function GO:0016874 ligase activity
molecular_function GO:0016829 lyase activity
molecular_function GO:0003824 catalytic activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG06G001520.1ClCG06G001520.1mRNA


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34657FAMILY NOT NAMEDcoord: 6..121
score: 4.5

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG06G001520Silver-seed gourdcarwcgB0956
ClCG06G001520Cucurbita maxima (Rimu)cmawcgB805
ClCG06G001520Cucurbita moschata (Rifu)cmowcgB800
ClCG06G001520Cucurbita pepo (Zucchini)cpewcgB298