Carg23599 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TGTCGTAGCTATTTTTCTTTCATCAGAGGGGACGAAGACTTGGACACACTGAGAGGCAATCCTAAATTCAGAATCAAGCTTTTCGTTCTAATTTCGTGTAGATTTCAGTTTTCCGGCGATCGTCGGTTGATTCGATATCTGTTCCGGCGATTTATGTTCGTCATTTCTAGCAATGTCGGTTAGTACTTCGTGAATTTCCCTCTTTTTCATCGCGTTTGAAGATTCTGATTGCGAAGTGGAAAATCGTTGGGGAAGGATTCCATTGGGTTAGATTTGGACCCTTACTCTGTAGTTTTTCTTTGGAGTTATTACAAATTAGTGCAATGTGCGGCCAAGGGATTAGATCTCTTGTGGTTTATTTTCCCGTTTGATTTTCCCATTTGAGGGTTTTGTATCATGTCGAGATTTTCCCATTCAGTGTATCAAGAATTAGGATTTATGTTTAAGCAAATTGGTCCATTTCTATGTTTTGATCGATGAAATGTATTTTGAATCCGTTCCACGTTCGTTCCTCCTACTGAACCTGAACTTGCATAGAAGCATACATTCGAAATTAAAACCAGGAACGTCATGCCTGTAATTAATACTTCGAAGTGTGTAATCTTCGCTCCCTTTGGATTACTATTGCTGCTTGGCTTGTTGATGTCCATCGTTTTCTTGGCTCCACCCATGAGATTTTCCTTTTTGCTTTTCATTTCTTTTCTGGCCATAGCTGATTTTTTTTACTCTCTTTCTGACTTATGTTGATCACTGTTCAGCTGTAGCAATGAATTTATGCACCTTCTTGGAGATAGTGGGAGACTTCTTGATCTTTGTCTGAACTGCTTTGTTCTGTATGTGCAGGTTAAAACTGTTAAAGTCAGCAATGTCTCCTTGGGAGCGTCTGAACGAGATCTCAAGGAGTTTTTTTCCTTCTCGGGCGACATTGCATATGTTGAAATGCAGAGGTTGTGCAGGTTTTCATTTCAGTTTATGATATATATTCTTTTCGTTCAATGTTTTTATTCGTTTGCAGTGAAAGTGAACGGTCTCAAATCGCTTACGTAACCTTTAAGGATACACAAGGAGCAGAGACTGCCATTCTTTTGTCTGTAAGTTCACTTTGTAGACAAAGTCTCTAGGTCGCGGTAATTATAAGTTTCATACCTATTGGCATTTGAGATATAACTCTCAAAGATTCCATTATTAGTGGAGCTGTGAGTCAAAGTTGAAATATTGTTGGCAATATGGTTGTTCAAGCTTAAAATGGTGTTCATGGCTGTTATTAGTGGTCACGTCACATAGCCTTCATCTAGGGAGAGGATGTTGCTTTAACAACCTCACCTGGGAGATCCCACATCGGTTGGGGAGCAGAACGAACATTTTTTATAAGGGTATGGAAACCTCTCCTAGCATATGCGTTTTAAAAACCTTGAGGAGAAGTCCGAAAGGAAAAGCCCAAAAAAGACGATATCTGCTAGCGGTGGACTTGGGCCGTTACATCACCACTAGAAGAGATCAGCGAGCACCTTAGCATTTCTTCTTCTGTTCTCTTTTACTTGTACCTTACATCATTTCCACCTCCATCCTCGGTGCGAGCCCCAATATATGTATTAGGTGGATCTTGTTGCCATTTTACAATCACATGATGTATGATATGAGTGAGCATTTTGCCACTTAACGAGTTAAATGGTCTAAGGGACACGACCTTCGGTGCAAACATCAGGAGGTCAAATTTTGGCTTGATTGCTCTTCTATTATGTGAGAGTATAAGATAGACCTTAGCTGGAAGTTTGTTCTGCATCAATAAAATTGCCCCATTTCTCTTTCCTTGAGATTCATATTGTTTGATTTTTTTTTTCTTACATTCATCACTCGTTATACTTAACGTATTAACTAATGAGAAACAGCAATACGAATCGCCCGAGCTAGTTAATTAATGGAGCTCAACTTCTTGTCAGGGAGCGACAATAGTGGATCTTTCTGTCAACATCACTCCATGTCCTGATTATGTGCTCCCTCCTGAAGCTACCGCACCACCCCCTGTAAGATTCTTGGGACTGTTTGTTTTTTGGGCTGCTATGTGTGTCACTTTATATGATTTCTCTTAGTTTACCTGCTTATTGTCTTGATTATTGCAGGCCCCTGGAACTAATGCACCTGGAACGGCTGAATCCGCCTATCAGAAAGCAGAGGATGTGGTCAGCAGTATGCTTGCTAAGGGCTTTATCTTGGGCAAAGACGCACTCAACTCTGCAAAGGCATTTGATGAGAAGCACCAATTATCTTCCACAGCTTCAGCCAAAGTAGCTACATTGGATAAAAAAATCGGGTTCACTGAGAAACTTAGTGCTGGAACGGTTTTGGTGGGCGAAAAAGTTCGAGAAGTAGACCAGAAGTTTCAGGTTTCAGAGAAGACTAAATCAGCATTTGCAGTTGCAGAAGAGAAAGTTAGCAATGCTGGAGCTGCCATTATGAGTAACCGATATGTAAAGAGTGGGACTAGCTGGGTTGCTGATACTTTCAATAAGGTAGCCAAGGCAGCTGGAGAAGTTGGTCAGAAAACAAAAGAGAAAATCGCGGTGTCTGAAGAAGATCAGAAAAAGAAGACGACGGTCGAAACTTTGCATCTCCCCGAATCCCCTAAAGCAGCAGCACCTGTGCCCCCTGAGCCTCAACAACGTCCCAAACCCGAACCCGCTCAAGGTCTGATCCTCTAA TGTCGTAGCTATTTTTCTTTCATCAGAGGGGACGAAGACTTGGACACACTGAGAGGCAATCCTAAATTCAGAATCAAGCTTTTCGTTCTAATTTCGTGTAGATTTCAGTTTTCCGGCGATCGTCGGTTGATTCGATATCTGTTCCGGCGATTTATGTTCGTCATTTCTAGCAATGTCGGTTAAAACTGTTAAAGTCAGCAATGTCTCCTTGGGAGCGTCTGAACGAGATCTCAAGGAGTTTTTTTCCTTCTCGGGCGACATTGCATATGTTGAAATGCAGAGGTTGTGCAGTGAAAGTGAACGGTCTCAAATCGCTTACGTAACCTTTAAGGATACACAAGGAGCAGAGACTGCCATTCTTTTGTCTGGAGCGACAATAGTGGATCTTTCTGTCAACATCACTCCATGTCCTGATTATGTGCTCCCTCCTGAAGCTACCGCACCACCCCCTGCCCCTGGAACTAATGCACCTGGAACGGCTGAATCCGCCTATCAGAAAGCAGAGGATGTGGTCAGCAGTATGCTTGCTAAGGGCTTTATCTTGGGCAAAGACGCACTCAACTCTGCAAAGGCATTTGATGAGAAGCACCAATTATCTTCCACAGCTTCAGCCAAAGTAGCTACATTGGATAAAAAAATCGGGTTCACTGAGAAACTTAGTGCTGGAACGGTTTTGGTGGGCGAAAAAGTTCGAGAAGTAGACCAGAAGTTTCAGGTTTCAGAGAAGACTAAATCAGCATTTGCAGTTGCAGAAGAGAAAGTTAGCAATGCTGGAGCTGCCATTATGAGTAACCGATATGTAAAGAGTGGGACTAGCTGGGTTGCTGATACTTTCAATAAGGTAGCCAAGGCAGCTGGAGAAGTTGGTCAGAAAACAAAAGAGAAAATCGCGGTGTCTGAAGAAGATCAGAAAAAGAAGACGACGGTCGAAACTTTGCATCTCCCCGAATCCCCTAAAGCAGCAGCACCTGTGCCCCCTGAGCCTCAACAACGTCCCAAACCCGAACCCGCTCAAGGTCTGATCCTCTAA ATGTCGGTTAAAACTGTTAAAGTCAGCAATGTCTCCTTGGGAGCGTCTGAACGAGATCTCAAGGAGTTTTTTTCCTTCTCGGGCGACATTGCATATGTTGAAATGCAGAGGTTGTGCAGTGAAAGTGAACGGTCTCAAATCGCTTACGTAACCTTTAAGGATACACAAGGAGCAGAGACTGCCATTCTTTTGTCTGGAGCGACAATAGTGGATCTTTCTGTCAACATCACTCCATGTCCTGATTATGTGCTCCCTCCTGAAGCTACCGCACCACCCCCTGCCCCTGGAACTAATGCACCTGGAACGGCTGAATCCGCCTATCAGAAAGCAGAGGATGTGGTCAGCAGTATGCTTGCTAAGGGCTTTATCTTGGGCAAAGACGCACTCAACTCTGCAAAGGCATTTGATGAGAAGCACCAATTATCTTCCACAGCTTCAGCCAAAGTAGCTACATTGGATAAAAAAATCGGGTTCACTGAGAAACTTAGTGCTGGAACGGTTTTGGTGGGCGAAAAAGTTCGAGAAGTAGACCAGAAGTTTCAGGTTTCAGAGAAGACTAAATCAGCATTTGCAGTTGCAGAAGAGAAAGTTAGCAATGCTGGAGCTGCCATTATGAGTAACCGATATGTAAAGAGTGGGACTAGCTGGGTTGCTGATACTTTCAATAAGGTAGCCAAGGCAGCTGGAGAAGTTGGTCAGAAAACAAAAGAGAAAATCGCGGTGTCTGAAGAAGATCAGAAAAAGAAGACGACGGTCGAAACTTTGCATCTCCCCGAATCCCCTAAAGCAGCAGCACCTGTGCCCCCTGAGCCTCAACAACGTCCCAAACCCGAACCCGCTCAAGGTCTGATCCTCTAA MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAETAILLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGTAESAYQKAEDVVSSMLAKGFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKFQVSEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAVSEEDQKKKTTVETLHLPESPKAAAPVPPEPQQRPKPEPAQGLIL
BLAST of Carg23599 vs. NCBI nr
Match: XP_022923202.1 (binding partner of ACD11 1-like [Cucurbita moschata]) HSP 1 Score: 427.9 bits (1099), Expect = 2.6e-116 Identity = 281/285 (98.60%), Postives = 281/285 (98.60%), Query Frame = 0
BLAST of Carg23599 vs. NCBI nr
Match: XP_023552502.1 (binding partner of ACD11 1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 425.2 bits (1092), Expect = 1.7e-115 Identity = 279/285 (97.89%), Postives = 280/285 (98.25%), Query Frame = 0
BLAST of Carg23599 vs. NCBI nr
Match: XP_022965319.1 (binding partner of ACD11 1-like [Cucurbita maxima]) HSP 1 Score: 413.7 bits (1062), Expect = 5.1e-112 Identity = 239/285 (83.86%), Postives = 241/285 (84.56%), Query Frame = 0
BLAST of Carg23599 vs. NCBI nr
Match: XP_008448657.1 (PREDICTED: binding partner of ACD11 1 isoform X1 [Cucumis melo]) HSP 1 Score: 337.0 bits (863), Expect = 6.1e-89 Identity = 220/287 (76.66%), Postives = 233/287 (81.18%), Query Frame = 0
BLAST of Carg23599 vs. NCBI nr
Match: XP_008448658.1 (PREDICTED: binding partner of ACD11 1 isoform X2 [Cucumis melo]) HSP 1 Score: 335.5 bits (859), Expect = 1.8e-88 Identity = 219/287 (76.31%), Postives = 232/287 (80.84%), Query Frame = 0
BLAST of Carg23599 vs. TAIR10
Match: AT4G17720.1 (RNA-binding (RRM/RBD/RNP motifs) family protein) HSP 1 Score: 279.3 bits (713), Expect = 2.7e-75 Identity = 161/267 (60.30%), Postives = 193/267 (72.28%), Query Frame = 0
BLAST of Carg23599 vs. TAIR10
Match: AT5G46870.1 (RNA-binding (RRM/RBD/RNP motifs) family protein) HSP 1 Score: 244.6 bits (623), Expect = 7.5e-65 Identity = 145/272 (53.31%), Postives = 185/272 (68.01%), Query Frame = 0
BLAST of Carg23599 vs. TAIR10
Match: AT1G67950.3 (RNA-binding (RRM/RBD/RNP motifs) family protein) HSP 1 Score: 196.8 bits (499), Expect = 1.8e-50 Identity = 123/260 (47.31%), Postives = 161/260 (61.92%), Query Frame = 0
BLAST of Carg23599 vs. TAIR10
Match: AT5G16840.2 (binding partner of acd11 1) HSP 1 Score: 183.0 bits (463), Expect = 2.7e-46 Identity = 123/258 (47.67%), Postives = 152/258 (58.91%), Query Frame = 0
BLAST of Carg23599 vs. TAIR10
Match: AT5G32450.1 (RNA binding (RRM/RBD/RNP motifs) family protein) HSP 1 Score: 167.2 bits (422), Expect = 1.5e-41 Identity = 128/264 (48.48%), Postives = 173/264 (65.53%), Query Frame = 0
BLAST of Carg23599 vs. Swiss-Prot
Match: sp|Q9LFD5|BPA1_ARATH (Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1) HSP 1 Score: 181.0 bits (458), Expect = 1.8e-44 Identity = 122/258 (47.29%), Postives = 151/258 (58.53%), Query Frame = 0
BLAST of Carg23599 vs. TrEMBL
Match: tr|A0A1S3BK81|A0A1S3BK81_CUCME (binding partner of ACD11 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490760 PE=4 SV=1) HSP 1 Score: 337.0 bits (863), Expect = 4.0e-89 Identity = 220/287 (76.66%), Postives = 233/287 (81.18%), Query Frame = 0
BLAST of Carg23599 vs. TrEMBL
Match: tr|A0A1S3BK74|A0A1S3BK74_CUCME (binding partner of ACD11 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490760 PE=4 SV=1) HSP 1 Score: 335.5 bits (859), Expect = 1.2e-88 Identity = 219/287 (76.31%), Postives = 232/287 (80.84%), Query Frame = 0
BLAST of Carg23599 vs. TrEMBL
Match: tr|A0A0A0L545|A0A0A0L545_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G008890 PE=4 SV=1) HSP 1 Score: 332.8 bits (852), Expect = 7.6e-88 Identity = 217/287 (75.61%), Postives = 232/287 (80.84%), Query Frame = 0
BLAST of Carg23599 vs. TrEMBL
Match: tr|A0A2C9U3Q4|A0A2C9U3Q4_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G010500 PE=4 SV=1) HSP 1 Score: 307.0 bits (785), Expect = 4.5e-80 Identity = 169/265 (63.77%), Postives = 201/265 (75.85%), Query Frame = 0
BLAST of Carg23599 vs. TrEMBL
Match: tr|A9PE83|A9PE83_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 PE=2 SV=1) HSP 1 Score: 300.1 bits (767), Expect = 5.5e-78 Identity = 179/287 (62.37%), Postives = 205/287 (71.43%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene:
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