Carg05653 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg05653
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Histone H2A
Location	Cucurbita_argyrosperma_scaffold_033 : 168937 .. 169894 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTATTTATCGTTCTCTATCTCGCGCCCTCGCCGGAAAATCGCCTACAATTCTCTCTGCTTAGGTTTTCTTTGTCTTTTCCGTCCAACCGATCTCATTCAATGGCCGGCAGAGGAAAAACCCTTGGATCTGGAGCCGCCAAGAAGGCTACCTCGAGGAGTAGTAAAGCCGGGTTGCAGTTTCCCGTCGGTCGTATTGCTCGTTTCCTCAAAGCCGGCAAGTACGCCGAGCGTGTTGGTGCCGGTGCCCCTGTCTACCTCGCTGCCGTCCTTGAATACCTTGCCGCTGAGGTATGTTAATTAATTGAAAGTTGTTTTCAATTTGATGTGGGGTTTTCTGGATTGAGTTCTCCTCGTGGATCTAGGGCTTCCAATTTTTCCCCAATTGGATTCCTTGTTCTCAAATTCCTCCAACCTTTTGAGAATTTTGATTGATTTAATTATTTTTGCGCTTAACTCGAGGGGGTTCTGATTTTTAGGTTTTGGAACTCGCTGGAAATGCTGCTAGGGATAACAAGAAGACGCGTATTGTTCCTCGTCACATTCAGCTTGCTGTACGTAACGATGAGGAGTTGAGCAAGCTGTTGGGGGATGTGACTATTGCTAATGGTGGTGTTATGCCCAACATTCACAATTTGCTTCTGCCCAAGAAAACAGGAACTTCATCAAAGAATGCCGGTGGTGATGATGAACCCTAGATTTCTTTGTAATAGAAAAAGGAATGGAACTGAATCATTGAATGTTGATGACATGTGGCTCTGGTCAAGATAGTGCTCTTCTTACTTTGTTAGATTTTTCAATTTTCGTTTCTCTTTTTTCGACATCTATTATTTTCCTTAGGTTAAAGATCTTTTGCTTATGGAATTTGTAATAGTCCCAAGGAGTAGTGCTAGAATTTCACCTAGTGTTGTGAATATCATCATCATCATCTATTAATATCACCGCCTACTTTTTCTTCAT

mRNA sequence

TTTATTTATCGTTCTCTATCTCGCGCCCTCGCCGGAAAATCGCCTACAATTCTCTCTGCTTAGGTTTTCTTTGTCTTTTCCGTCCAACCGATCTCATTCAATGGCCGGCAGAGGAAAAACCCTTGGATCTGGAGCCGCCAAGAAGGCTACCTCGAGGAGTAGTAAAGCCGGGTTGCAGTTTCCCGTCGGTCGTATTGCTCGTTTCCTCAAAGCCGGCAAGTACGCCGAGCGTGTTGGTGCCGGTGCCCCTGTCTACCTCGCTGCCGTCCTTGAATACCTTGCCGCTGAGGTTTTGGAACTCGCTGGAAATGCTGCTAGGGATAACAAGAAGACGCGTATTGTTCCTCGTCACATTCAGCTTGCTGTACGTAACGATGAGGAGTTGAGCAAGCTGTTGGGGGATGTGACTATTGCTAATGGTGGTGTTATGCCCAACATTCACAATTTGCTTCTGCCCAAGAAAACAGGAACTTCATCAAAGAATGCCGGTGGTGATGATGAACCCTAGATTTCTTTGTAATAGAAAAAGGAATGGAACTGAATCATTGAATGTTGATGACATGTGGCTCTGGTCAAGATAGTGCTCTTCTTACTTTGTTAGATTTTTCAATTTTCGTTTCTCTTTTTTCGACATCTATTATTTTCCTTAGGTTAAAGATCTTTTGCTTATGGAATTTGTAATAGTCCCAAGGAGTAGTGCTAGAATTTCACCTAGTGTTGTGAATATCATCATCATCATCTATTAATATCACCGCCTACTTTTTCTTCAT

Coding sequence (CDS)

ATGGCCGGCAGAGGAAAAACCCTTGGATCTGGAGCCGCCAAGAAGGCTACCTCGAGGAGTAGTAAAGCCGGGTTGCAGTTTCCCGTCGGTCGTATTGCTCGTTTCCTCAAAGCCGGCAAGTACGCCGAGCGTGTTGGTGCCGGTGCCCCTGTCTACCTCGCTGCCGTCCTTGAATACCTTGCCGCTGAGGTTTTGGAACTCGCTGGAAATGCTGCTAGGGATAACAAGAAGACGCGTATTGTTCCTCGTCACATTCAGCTTGCTGTACGTAACGATGAGGAGTTGAGCAAGCTGTTGGGGGATGTGACTATTGCTAATGGTGGTGTTATGCCCAACATTCACAATTTGCTTCTGCCCAAGAAAACAGGAACTTCATCAAAGAATGCCGGTGGTGATGATGAACCCTAG

Protein sequence

MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSSKNAGGDDEP

Homology

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BLAST of Carg05653 vs. NCBI nr
Match: XP_004151965.1 (PREDICTED: histone H2A.6 [Cucumis sativus] >XP_008454570.1 PREDICTED: histone H2A.6 [Cucumis melo] >XP_022139360.1 histone H2A.6-like [Momordica charantia] >XP_022937039.1 histone H2A.6-like [Cucurbita moschata] >XP_022941439.1 histone H2A.6-like [Cucurbita moschata] >XP_022976601.1 histone H2A.6-like [Cucurbita maxima] >XP_022981666.1 histone H2A.6-like [Cucurbita maxima] >XP_023521617.1 histone H2A.6-like [Cucurbita pepo subsp. pepo] >XP_023535142.1 histone H2A.6-like [Cucurbita pepo subsp. pepo] >KGN57956.1 hypothetical protein Csa_3G408540 [Cucumis sativus])

HSP 1 Score: 257.7 bits (657), Expect = 2.2e-65
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDEP 136
           KTGTSSKNAGGDDEP
Sbjct: 121 KTGTSSKNAGGDDEP 135

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BLAST of Carg05653 vs. NCBI nr
Match: PON55943.1 (Histone H2A [Trema orientalis] >PON61412.1 Histone H2A [Parasponia andersonii])

HSP 1 Score: 249.6 bits (636), Expect = 6.0e-63
Identity = 131/134 (97.76%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           KTGTSSK +GGDD+
Sbjct: 121 KTGTSSKASGGDDD 134

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BLAST of Carg05653 vs. NCBI nr
Match: XP_010092305.1 (histone H2A.6 [Morus notabilis] >EXB50939.1 putative histone H2A.1 [Morus notabilis])

HSP 1 Score: 248.8 bits (634), Expect = 1.0e-62
Identity = 131/134 (97.76%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           KTG SSK AGGDD+
Sbjct: 121 KTGASSKAAGGDDD 134

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BLAST of Carg05653 vs. NCBI nr
Match: XP_008365768.1 (PREDICTED: histone H2A.6 [Malus domestica] >XP_009358077.1 PREDICTED: histone H2A.6 [Pyrus x bretschneideri] >XP_009346466.1 PREDICTED: histone H2A.6 [Pyrus x bretschneideri])

HSP 1 Score: 248.4 bits (633), Expect = 1.3e-62
Identity = 130/134 (97.01%), Postives = 131/134 (97.76%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK LGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKALGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           KTG SSKN GGDD+
Sbjct: 121 KTGASSKNVGGDDD 134

[Close]

BLAST of Carg05653 vs. NCBI nr
Match: XP_009355568.1 (PREDICTED: histone H2A.6-like [Pyrus x bretschneideri])

HSP 1 Score: 248.4 bits (633), Expect = 1.3e-62
Identity = 130/134 (97.01%), Postives = 131/134 (97.76%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK LGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKALGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           KTG SSKN GGDD+
Sbjct: 121 KTGASSKNVGGDDD 134

[Close]

BLAST of Carg05653 vs. TAIR10
Match: AT1G51060.1 (histone H2A 10)

HSP 1 Score: 233.0 bits (593), Expect = 1.1e-61
Identity = 123/132 (93.18%), Postives = 126/132 (95.45%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG+AKKAT+RSSKAGLQFPVGRIARFLK GKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGD 133
           KTG S  +A  D
Sbjct: 121 KTGASKPSAEDD 132

[Close]

BLAST of Carg05653 vs. TAIR10
Match: AT5G54640.1 (Histone superfamily protein)

HSP 1 Score: 231.9 bits (590), Expect = 2.4e-61
Identity = 122/125 (97.60%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG AKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGGAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTS 126
           K G S
Sbjct: 121 KAGAS 125

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BLAST of Carg05653 vs. TAIR10
Match: AT4G27230.1 (histone H2A 2)

HSP 1 Score: 230.3 bits (586), Expect = 6.9e-61
Identity = 121/125 (96.80%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK LGSGAAKK+TSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTS 126
           K G+S
Sbjct: 121 KAGSS 125

[Close]

BLAST of Carg05653 vs. TAIR10
Match: AT3G20670.1 (histone H2A 13)

HSP 1 Score: 226.1 bits (575), Expect = 1.3e-59
Identity = 120/132 (90.91%), Postives = 123/132 (93.18%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG AKK+TSRSSKAGLQFPVGRIARFLK GKYA RVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGVAKKSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIH+LLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPK 120

Query: 121 KTGTSSKNAGGD 133
           K G S  +A  D
Sbjct: 121 KAGASKPSADED 132

[Close]

BLAST of Carg05653 vs. TAIR10
Match: AT1G54690.1 (gamma histone variant H2AX)

HSP 1 Score: 197.6 bits (501), Expect = 4.9e-51
Identity = 108/132 (81.82%), Postives = 112/132 (84.85%), Query Frame = 0


Query: 2   AGRGKTLGSGAAKKAT---SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLE 61
           AG G T G     KAT   SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLE
Sbjct: 5   AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 64

Query: 62  YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLL 121
           YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LL
Sbjct: 65  YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 124

Query: 122 PKKTGTSSKNAG 131
           P K G +  + G
Sbjct: 125 PSKVGKNKGDIG 136

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BLAST of Carg05653 vs. Swiss-Prot
Match: sp|A2YVE5|H2A3_ORYSI (Probable histone H2A.3 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_028288 PE=3 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 1.5e-60
Identity = 123/134 (91.79%), Postives = 127/134 (94.78%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK +GS AAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKAIGSSAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           K G+S+K A  DDE
Sbjct: 121 KAGSSAKAAAADDE 134

[Close]

BLAST of Carg05653 vs. Swiss-Prot
Match: sp|Q84NJ4|H2A3_ORYSJ (Probable histone H2A.3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0427700 PE=3 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 1.5e-60
Identity = 123/134 (91.79%), Postives = 127/134 (94.78%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK +GS AAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKAIGSSAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           K G+S+K A  DDE
Sbjct: 121 KAGSSAKAAAADDE 134

[Close]

BLAST of Carg05653 vs. Swiss-Prot
Match: sp|Q9C681|H2A1_ARATH (Probable histone H2A.1 OS=Arabidopsis thaliana OX=3702 GN=At1g51060 PE=1 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 1.9e-60
Identity = 123/132 (93.18%), Postives = 126/132 (95.45%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG+AKKAT+RSSKAGLQFPVGRIARFLK GKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGD 133
           KTG S  +A  D
Sbjct: 121 KTGASKPSAEDD 132

[Close]

BLAST of Carg05653 vs. Swiss-Prot
Match: sp|A2YMC6|H2A2_ORYSI (Probable histone H2A.2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_025469 PE=3 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 4.3e-60
Identity = 122/134 (91.04%), Postives = 127/134 (94.78%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK +GSGAAKKA SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKAIGSGAAKKAMSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIA+GGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           K G S+K A GDD+
Sbjct: 121 KAGGSAKAAAGDDD 134

[Close]

BLAST of Carg05653 vs. Swiss-Prot
Match: sp|Q6ZL42|H2A2_ORYSJ (Probable histone H2A.2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0545400 PE=2 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 4.3e-60
Identity = 122/134 (91.04%), Postives = 127/134 (94.78%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK +GSGAAKKA SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKAIGSGAAKKAMSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIA+GGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           K G S+K A GDD+
Sbjct: 121 KAGGSAKAAAGDDD 134

[Close]

BLAST of Carg05653 vs. TrEMBL
Match: tr|A0A1S3C052|A0A1S3C052_CUCME (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103494959 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 1.5e-65
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDEP 136
           KTGTSSKNAGGDDEP
Sbjct: 121 KTGTSSKNAGGDDEP 135

[Close]

BLAST of Carg05653 vs. TrEMBL
Match: tr|A0A0A0LD22|A0A0A0LD22_CUCSA (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_3G408540 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 1.5e-65
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDEP 136
           KTGTSSKNAGGDDEP
Sbjct: 121 KTGTSSKNAGGDDEP 135

[Close]

BLAST of Carg05653 vs. TrEMBL
Match: tr|A0A2P5C4G5|A0A2P5C4G5_9ROSA (Histone H2A OS=Trema orientalis OX=63057 GN=TorRG33x02_298080 PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 4.0e-63
Identity = 131/134 (97.76%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           KTGTSSK +GGDD+
Sbjct: 121 KTGTSSKASGGDDD 134

[Close]

BLAST of Carg05653 vs. TrEMBL
Match: tr|A0A2P5CK54|A0A2P5CK54_PARAD (Histone H2A OS=Parasponia andersonii OX=3476 GN=PanWU01x14_145320 PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 4.0e-63
Identity = 131/134 (97.76%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           KTGTSSK +GGDD+
Sbjct: 121 KTGTSSKASGGDDD 134

[Close]

BLAST of Carg05653 vs. TrEMBL
Match: tr|W9QQY1|W9QQY1_9ROSA (Histone H2A OS=Morus notabilis OX=981085 GN=L484_021167 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 6.8e-63
Identity = 131/134 (97.76%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           KTG SSK AGGDD+
Sbjct: 121 KTGASSKAAGGDDD 134

The following BLAST results are available for this feature:

BLAST of Carg05653 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151965.1	2.2e-65	100.00	PREDICTED: histone H2A.6 [Cucumis sativus] >XP_008454570.1 PREDICTED: histone H2...	[more]
PON55943.1	6.0e-63	97.76	Histone H2A [Trema orientalis] >PON61412.1 Histone H2A [Parasponia andersonii]	[more]
XP_010092305.1	1.0e-62	97.76	histone H2A.6 [Morus notabilis] >EXB50939.1 putative histone H2A.1 [Morus notabi...	[more]
XP_008365768.1	1.3e-62	97.01	PREDICTED: histone H2A.6 [Malus domestica] >XP_009358077.1 PREDICTED: histone H2...	[more]
XP_009355568.1	1.3e-62	97.01	PREDICTED: histone H2A.6-like [Pyrus x bretschneideri]	[more]

BLAST of Carg05653 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G51060.1	1.1e-61	93.18	histone H2A 10	[more]
AT5G54640.1	2.4e-61	97.60	Histone superfamily protein	[more]
AT4G27230.1	6.9e-61	96.80	histone H2A 2	[more]
AT3G20670.1	1.3e-59	90.91	histone H2A 13	[more]
AT1G54690.1	4.9e-51	81.82	gamma histone variant H2AX	[more]

BLAST of Carg05653 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A2YVE5\|H2A3_ORYSI	1.5e-60	91.79	Probable histone H2A.3 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_028288 PE=3...	[more]
sp\|Q84NJ4\|H2A3_ORYSJ	1.5e-60	91.79	Probable histone H2A.3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0427700 ...	[more]
sp\|Q9C681\|H2A1_ARATH	1.9e-60	93.18	Probable histone H2A.1 OS=Arabidopsis thaliana OX=3702 GN=At1g51060 PE=1 SV=1	[more]
sp\|A2YMC6\|H2A2_ORYSI	4.3e-60	91.04	Probable histone H2A.2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_025469 PE=3...	[more]
sp\|Q6ZL42\|H2A2_ORYSJ	4.3e-60	91.04	Probable histone H2A.2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0545400 ...	[more]

BLAST of Carg05653 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C052\|A0A1S3C052_CUCME	1.5e-65	100.00	Histone H2A OS=Cucumis melo OX=3656 GN=LOC103494959 PE=3 SV=1	[more]
tr\|A0A0A0LD22\|A0A0A0LD22_CUCSA	1.5e-65	100.00	Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_3G408540 PE=3 SV=1	[more]
tr\|A0A2P5C4G5\|A0A2P5C4G5_9ROSA	4.0e-63	97.76	Histone H2A OS=Trema orientalis OX=63057 GN=TorRG33x02_298080 PE=3 SV=1	[more]
tr\|A0A2P5CK54\|A0A2P5CK54_PARAD	4.0e-63	97.76	Histone H2A OS=Parasponia andersonii OX=3476 GN=PanWU01x14_145320 PE=3 SV=1	[more]
tr\|W9QQY1\|W9QQY1_9ROSA	6.8e-63	97.76	Histone H2A OS=Morus notabilis OX=981085 GN=L484_021167 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus
GO:0000786	nucleosome

Vocabulary: **INTERPRO**
Term	Definition
IPR032458	Histone_H2A_CS
IPR009072	Histone-fold
IPR032454	Histone_H2A_C
IPR007125	Histone_H2A/H2B/H3
IPR002119	Histone_H2A

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05653-RA	Carg05653-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 73..87 score: 78.86 coord: 59..72 score: 89.46 coord: 101..119 score: 66.52 coord: 44..59 score: 90.36 coord: 15..37 score: 72.51
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 4..124 e-value: 7.4E-77 score: 271.3
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 9..121 e-value: 1.74475E-67 score: 201.41
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 13..90 e-value: 2.0E-14 score: 54.0
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 93..127 e-value: 4.6E-19 score: 67.8
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 1..130 e-value: 9.3E-63 score: 211.9
IPR009072	Histone-fold	SUPERFAMILY	SSF47113	Histone-fold	coord: 9..125
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 1..129
None	No IPR available	PANTHER	PTHR23430:SF195	HISTONE H2A.1-RELATED	coord: 1..129
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 23..29

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg05653	Cla001720	Watermelon (97103) v1	carwmB1020
Carg05653	Csa3G408540	Cucumber (Chinese Long) v2	carcuB1029
Carg05653	MELO3C018135	Melon (DHL92) v3.5.1	carmeB0990
Carg05653	ClCG05G014880	Watermelon (Charleston Gray)	carwcgB0998
Carg05653	CSPI03G23070	Wild cucumber (PI 183967)	carcpiB1053
Carg05653	Cucsa.267260	Cucumber (Gy14) v1	carcgyB1137
Carg05653	CmaCh01G011560	Cucurbita maxima (Rimu)	carcmaB1410
Carg05653	CmaCh09G009200	Cucurbita maxima (Rimu)	carcmaB1407
Carg05653	CmoCh01G012100	Cucurbita moschata (Rifu)	carcmoB1367
Carg05653	CmoCh09G009160	Cucurbita moschata (Rifu)	carcmoB1364
Carg05653	Lsi04G012500	Bottle gourd (USVL1VR-Ls)	carlsiB933
Carg05653	Cp4.1LG02g01240	Cucurbita pepo (Zucchini)	carcpeB1420
Carg05653	Cp4.1LG06g07260	Cucurbita pepo (Zucchini)	carcpeB1422
Carg05653	CsGy3G022060	Cucumber (Gy14) v2	carcgybB1001
Carg05653	MELO3C018135.2	Melon (DHL92) v3.6.1	carmedB1000
Carg05653	CsaV3_3G022800	Cucumber (Chinese Long) v3	carcucB1059
Carg05653	Cla97C05G096070	Watermelon (97103) v2	carwmbB1083
Carg05653	Bhi09G001644	Wax gourd	carwgoB1199

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg05653	Carg12790	Silver-seed gourd	carcarB641

The following block(s) are covering this gene:


Gene	Organism	Block
Carg05653	Watermelon (97103) v2	carwmbB1075
Carg05653	Watermelon (97103) v2	carwmbB1082