ClCG05G014880 (gene) Watermelon (Charleston Gray)

Overview
NameClCG05G014880
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionHistone H2A
LocationCG_Chr05 : 25838194 .. 25839387 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACGGCCACAGATCTCGATCCGTGTACTTCAATTTCATTGGCTCATCTCACAACACCCATCTCACTATATATACCAAATACTGTCCTTTTATCTTTCGTGATTATATATTACTCTCTCTCGCGCCCTCGCCGGAAAATCCCCACCAATCTTCTCTTCCATTTCTTTAATTCTTCTTTTCCGTCTAACAGATCTCAATTAATGGCCGGCAGAGGCAAAACCCTAGGATCCGGAGCCGCCAAGAAGGCCACCTCCAGGAGTAGTAAAGCCGGGTTGCAGTTTCCCGTCGGTCGAATTGCTCGTTTCCTCAAGGCCGGTAAGTACGCCGAGCGTGTCGGTGCGGGTGCTCCGGTCTATCTTGCTGCTGTGCTTGAATACCTCGCCGCTGAGGTATGATAATTTCGAAGTTCCTTTTGGTATCTATCGCTGTGTGGGTTTTGTGTAATTGAGCGCTCCTAATGGATCTAGGGTTTCAAATTTTCCCTAATTCGTGCCCTCTTTCGCAATTTCTTCATGGCTATTTGGGAATTTAATTGATCTTGTTGCTTTTGGGATTAATTCGAGTGTTTTTAATATGTTTAGGTTTTGGAACTCGCTGGAAACGCTGCTAGGGATAACAAGAAGACGCGTATTGTTCCTCGTCATATTCAGCTTGCTGTACGTAACGATGAGGAGCTCAGCAAGCTTTTGGGTGATGTGACTATTGCTAACGGTGGTGTTATGCCCAACATTCACAATCTGCTTCTGCCCAAGAAAACAGGGACTTCATCGAAGAATGCTGGTGGTGATGATGAACCCTAGATTTGTTTGTAACAGAAACGAATGAACTGAATCATTGAAATGTTGATGAAATGTGGCTCTGGTCAAGATAGTGCTCTCTTACTTTGTTGTTAGATTTTTAAATTTTCTTCTTTTTGTTTTCTTCCATGCTTTGACATCTATTATTTTTAGGGTTACGAATCTTTGCTTATGGAATTTGTAATAGTTCAAGGAGTAGTGCTAGAATTTCACCTAGTGTTGTGAATATCATCATCATCATCATCTATTAATATCACCTCCTACTTGTTCTTCATACCTTAGATTATGGAATCTTGTTCTGACTATTGGGTTTTTCATATCTTTATTTTTCTGATTACCACTCTGAGCAAGGATATTTGGAATCAAGTGTTGTAATTTGAATGAAAATTAAGTTGCCT

mRNA sequence

AACGGCCACAGATCTCGATCCGTGTACTTCAATTTCATTGGCTCATCTCACAACACCCATCTCACTATATATACCAAATACTGTCCTTTTATCTTTCGTGATTATATATTACTCTCTCTCGCGCCCTCGCCGGAAAATCCCCACCAATCTTCTCTTCCATTTCTTTAATTCTTCTTTTCCGTCTAACAGATCTCAATTAATGGCCGGCAGAGGCAAAACCCTAGGATCCGGAGCCGCCAAGAAGGCCACCTCCAGGAGTAGTAAAGCCGGGTTGCAGTTTCCCGTCGGTCGAATTGCTCGTTTCCTCAAGGCCGGTAAGTACGCCGAGCGTGTCGGTGCGGGTGCTCCGGTCTATCTTGCTGCTGTGCTTGAATACCTCGCCGCTGAGGTTTTGGAACTCGCTGGAAACGCTGCTAGGGATAACAAGAAGACGCGTATTGTTCCTCGTCATATTCAGCTTGCTGTACGTAACGATGAGGAGCTCAGCAAGCTTTTGGGTGATGTGACTATTGCTAACGGTGGTGTTATGCCCAACATTCACAATCTGCTTCTGCCCAAGAAAACAGGGACTTCATCGAAGAATGCTGGTGGTGATGATGAACCCTAGATTTGTTTGTAACAGAAACGAATGAACTGAATCATTGAAATGTTGATGAAATGTGGCTCTGGTCAAGATAGTGCTCTCTTACTTTGTTGTTAGATTTTTAAATTTTCTTCTTTTTGTTTTCTTCCATGCTTTGACATCTATTATTTTTAGGGTTACGAATCTTTGCTTATGGAATTTGTAATAGTTCAAGGAGTAGTGCTAGAATTTCACCTAGTGTTGTGAATATCATCATCATCATCATCTATTAATATCACCTCCTACTTGTTCTTCATACCTTAGATTATGGAATCTTGTTCTGACTATTGGGTTTTTCATATCTTTATTTTTCTGATTACCACTCTGAGCAAGGATATTTGGAATCAAGTGTTGTAATTTGAATGAAAATTAAGTTGCCT

Coding sequence (CDS)

ATGGCCGGCAGAGGCAAAACCCTAGGATCCGGAGCCGCCAAGAAGGCCACCTCCAGGAGTAGTAAAGCCGGGTTGCAGTTTCCCGTCGGTCGAATTGCTCGTTTCCTCAAGGCCGGTAAGTACGCCGAGCGTGTCGGTGCGGGTGCTCCGGTCTATCTTGCTGCTGTGCTTGAATACCTCGCCGCTGAGGTTTTGGAACTCGCTGGAAACGCTGCTAGGGATAACAAGAAGACGCGTATTGTTCCTCGTCATATTCAGCTTGCTGTACGTAACGATGAGGAGCTCAGCAAGCTTTTGGGTGATGTGACTATTGCTAACGGTGGTGTTATGCCCAACATTCACAATCTGCTTCTGCCCAAGAAAACAGGGACTTCATCGAAGAATGCTGGTGGTGATGATGAACCCTAG

Protein sequence

MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSSKNAGGDDEP
Homology
[Close]
BLAST of ClCG05G014880 vs. Swiss-Prot
Match: H2A3_ORYSI (Probable histone H2A.3 OS=Oryza sativa subsp. indica GN=OsI_028288 PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.0e-62
Identity = 123/134 (91.79%), Postives = 125/134 (93.28%), Query Frame = 1 

Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK +GS AAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKAIGSSAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           K G+S+K A  DDE
Sbjct: 121 KAGSSAKAAAADDE 134

[Close]
BLAST of ClCG05G014880 vs. Swiss-Prot
Match: H2A3_ORYSJ (Probable histone H2A.3 OS=Oryza sativa subsp. japonica GN=Os08g0427700 PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.0e-62
Identity = 123/134 (91.79%), Postives = 125/134 (93.28%), Query Frame = 1 

Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK +GS AAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKAIGSSAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           K G+S+K A  DDE
Sbjct: 121 KAGSSAKAAAADDE 134

[Close]
BLAST of ClCG05G014880 vs. Swiss-Prot
Match: H2A1_ARATH (Probable histone H2A.1 OS=Arabidopsis thaliana GN=At1g51060 PE=1 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 2.6e-62
Identity = 123/132 (93.18%), Postives = 124/132 (93.94%), Query Frame = 1 

Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG+AKKAT+RSSKAGLQFPVGRIARFLK GKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGD 133
           KTG S  +A  D
Sbjct: 121 KTGASKPSAEDD 132

[Close]
BLAST of ClCG05G014880 vs. Swiss-Prot
Match: H2A2_ORYSI (Probable histone H2A.2 OS=Oryza sativa subsp. indica GN=OsI_025469 PE=3 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 5.9e-62
Identity = 122/134 (91.04%), Postives = 126/134 (94.03%), Query Frame = 1 

Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK +GSGAAKKA SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKAIGSGAAKKAMSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIA+GGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           K G S+K A GDD+
Sbjct: 121 KAGGSAKAAAGDDD 134

[Close]
BLAST of ClCG05G014880 vs. Swiss-Prot
Match: H2A2_ORYSJ (Probable histone H2A.2 OS=Oryza sativa subsp. japonica GN=Os07g0545400 PE=2 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 5.9e-62
Identity = 122/134 (91.04%), Postives = 126/134 (94.03%), Query Frame = 1 

Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK +GSGAAKKA SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKAIGSGAAKKAMSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIA+GGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           K G S+K A GDD+
Sbjct: 121 KAGGSAKAAAGDDD 134

[Close]
BLAST of ClCG05G014880 vs. TrEMBL
Match: A0A0A0LD22_CUCSA (Histone H2A OS=Cucumis sativus GN=Csa_3G408540 PE=3 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.1e-67
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 1 

Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDEP 136
           KTGTSSKNAGGDDEP
Sbjct: 121 KTGTSSKNAGGDDEP 135

[Close]
BLAST of ClCG05G014880 vs. TrEMBL
Match: W9QQY1_9ROSA (Histone H2A OS=Morus notabilis GN=L484_021167 PE=3 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 5.2e-65
Identity = 131/134 (97.76%), Postives = 132/134 (98.51%), Query Frame = 1 

Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           KTG SSK AGGDD+
Sbjct: 121 KTGASSKAAGGDDD 134

[Close]
BLAST of ClCG05G014880 vs. TrEMBL
Match: M5X7W0_PRUPE (Histone H2A OS=Prunus persica GN=PRUPE_ppa013202mg PE=3 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.1e-64
Identity = 129/134 (96.27%), Postives = 131/134 (97.76%), Query Frame = 1 

Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK +GSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKAIGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           K GTSSKN GGDD+
Sbjct: 121 KAGTSSKNVGGDDD 134

[Close]
BLAST of ClCG05G014880 vs. TrEMBL
Match: A0A0B0NVH6_GOSAR (Histone H2A OS=Gossypium arboreum GN=F383_22944 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 7.5e-64
Identity = 128/134 (95.52%), Postives = 132/134 (98.51%), Query Frame = 1 

Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGA+KKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           K GTSSK +GGD++
Sbjct: 121 KAGTSSKASGGDED 134

[Close]
BLAST of ClCG05G014880 vs. TrEMBL
Match: E0CT43_VITVI (Histone H2A OS=Vitis vinifera GN=VIT_19s0014g05020 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 7.5e-64
Identity = 129/134 (96.27%), Postives = 131/134 (97.76%), Query Frame = 1 

Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           K G SSK +GGDD+
Sbjct: 121 KAGGSSKASGGDDD 134

[Close]
BLAST of ClCG05G014880 vs. TAIR10
Match: AT1G51060.1 (AT1G51060.1 histone H2A 10)

HSP 1 Score: 239.2 bits (609), Expect = 1.5e-63
Identity = 123/132 (93.18%), Postives = 124/132 (93.94%), Query Frame = 1 

Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG+AKKAT+RSSKAGLQFPVGRIARFLK GKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGD 133
           KTG S  +A  D
Sbjct: 121 KTGASKPSAEDD 132

[Close]
BLAST of ClCG05G014880 vs. TAIR10
Match: AT5G54640.1 (AT5G54640.1 Histone superfamily protein)

HSP 1 Score: 237.3 bits (604), Expect = 5.6e-63
Identity = 122/125 (97.60%), Postives = 120/125 (96.00%), Query Frame = 1 

Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG AKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGGAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTS 126
           K G S
Sbjct: 121 KAGAS 125

[Close]
BLAST of ClCG05G014880 vs. TAIR10
Match: AT4G27230.1 (AT4G27230.1 histone H2A 2)

HSP 1 Score: 235.7 bits (600), Expect = 1.6e-62
Identity = 121/125 (96.80%), Postives = 121/125 (96.80%), Query Frame = 1 

Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK LGSGAAKK+TSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTS 126
           K G+S
Sbjct: 121 KAGSS 125

[Close]
BLAST of ClCG05G014880 vs. TAIR10
Match: AT3G20670.1 (AT3G20670.1 histone H2A 13)

HSP 1 Score: 232.3 bits (591), Expect = 1.8e-61
Identity = 120/132 (90.91%), Postives = 121/132 (91.67%), Query Frame = 1 

Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG AKK+TSRSSKAGLQFPVGRIARFLK GKYA RVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGVAKKSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIH+LLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPK 120

Query: 121 KTGTSSKNAGGD 133
           K G S  +A  D
Sbjct: 121 KAGASKPSADED 132

[Close]
BLAST of ClCG05G014880 vs. TAIR10
Match: AT1G54690.1 (AT1G54690.1 gamma histone variant H2AX)

HSP 1 Score: 203.4 bits (516), Expect = 9.0e-53
Identity = 108/132 (81.82%), Postives = 110/132 (83.33%), Query Frame = 1 

Query: 2   AGRGKTLGSGAAKKAT---SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLE 61
           AG G T G     KAT   SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLE
Sbjct: 5   AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 64

Query: 62  YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLL 121
           YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LL
Sbjct: 65  YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 124

Query: 122 PKKTGTSSKNAG 131
           P K G +  + G
Sbjct: 125 PSKVGKNKGDIG 136

[Close]
BLAST of ClCG05G014880 vs. NCBI nr
Match: gi|449468512|ref|XP_004151965.1| (PREDICTED: histone H2A.6 [Cucumis sativus])

HSP 1 Score: 263.8 bits (673), Expect = 1.6e-67
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 1 

Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDEP 136
           KTGTSSKNAGGDDEP
Sbjct: 121 KTGTSSKNAGGDDEP 135

[Close]
BLAST of ClCG05G014880 vs. NCBI nr
Match: gi|703083793|ref|XP_010092305.1| (putative histone H2A.1 [Morus notabilis])

HSP 1 Score: 255.0 bits (650), Expect = 7.4e-65
Identity = 131/134 (97.76%), Postives = 132/134 (98.51%), Query Frame = 1 

Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           KTG SSK AGGDD+
Sbjct: 121 KTGASSKAAGGDDD 134

[Close]
BLAST of ClCG05G014880 vs. NCBI nr
Match: gi|694329627|ref|XP_009355568.1| (PREDICTED: histone H2A.6-like [Pyrus x bretschneideri])

HSP 1 Score: 254.6 bits (649), Expect = 9.7e-65
Identity = 130/134 (97.01%), Postives = 131/134 (97.76%), Query Frame = 1 

Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK LGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKALGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           KTG SSKN GGDD+
Sbjct: 121 KTGASSKNVGGDDD 134

[Close]
BLAST of ClCG05G014880 vs. NCBI nr
Match: gi|657954031|ref|XP_008365768.1| (PREDICTED: histone H2A.6-like [Malus domestica])

HSP 1 Score: 254.6 bits (649), Expect = 9.7e-65
Identity = 130/134 (97.01%), Postives = 131/134 (97.76%), Query Frame = 1 

Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK LGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKALGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           KTG SSKN GGDD+
Sbjct: 121 KTGASSKNVGGDDD 134

[Close]
BLAST of ClCG05G014880 vs. NCBI nr
Match: gi|595904436|ref|XP_007213976.1| (hypothetical protein PRUPE_ppa013202mg [Prunus persica])

HSP 1 Score: 253.8 bits (647), Expect = 1.6e-64
Identity = 129/134 (96.27%), Postives = 131/134 (97.76%), Query Frame = 1 

Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK +GSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKAIGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           K GTSSKN GGDD+
Sbjct: 121 KAGTSSKNVGGDDD 134

The following BLAST results are available for this feature:
BLAST of ClCG05G014880 vs. Swiss-Prot
Match NameE-valueIdentityDescription
H2A3_ORYSI2.0e-6291.79Probable histone H2A.3 OS=Oryza sativa subsp. indica GN=OsI_028288 PE=3 SV=1[more]
H2A3_ORYSJ2.0e-6291.79Probable histone H2A.3 OS=Oryza sativa subsp. japonica GN=Os08g0427700 PE=3 SV=1[more]
H2A1_ARATH2.6e-6293.18Probable histone H2A.1 OS=Arabidopsis thaliana GN=At1g51060 PE=1 SV=1[more]
H2A2_ORYSI5.9e-6291.04Probable histone H2A.2 OS=Oryza sativa subsp. indica GN=OsI_025469 PE=3 SV=1[more]
H2A2_ORYSJ5.9e-6291.04Probable histone H2A.2 OS=Oryza sativa subsp. japonica GN=Os07g0545400 PE=2 SV=1[more]
BLAST of ClCG05G014880 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LD22_CUCSA1.1e-67100.00Histone H2A OS=Cucumis sativus GN=Csa_3G408540 PE=3 SV=1[more]
W9QQY1_9ROSA5.2e-6597.76Histone H2A OS=Morus notabilis GN=L484_021167 PE=3 SV=1[more]
M5X7W0_PRUPE1.1e-6496.27Histone H2A OS=Prunus persica GN=PRUPE_ppa013202mg PE=3 SV=1[more]
A0A0B0NVH6_GOSAR7.5e-6495.52Histone H2A OS=Gossypium arboreum GN=F383_22944 PE=3 SV=1[more]
E0CT43_VITVI7.5e-6496.27Histone H2A OS=Vitis vinifera GN=VIT_19s0014g05020 PE=3 SV=1[more]
BLAST of ClCG05G014880 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G51060.11.5e-6393.18 histone H2A 10[more]
AT5G54640.15.6e-6397.60 Histone superfamily protein[more]
AT4G27230.11.6e-6296.80 histone H2A 2[more]
AT3G20670.11.8e-6190.91 histone H2A 13[more]
AT1G54690.19.0e-5381.82 gamma histone variant H2AX[more]
BLAST of ClCG05G014880 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449468512|ref|XP_004151965.1|1.6e-67100.00PREDICTED: histone H2A.6 [Cucumis sativus][more]
gi|703083793|ref|XP_010092305.1|7.4e-6597.76putative histone H2A.1 [Morus notabilis][more]
gi|694329627|ref|XP_009355568.1|9.7e-6597.01PREDICTED: histone H2A.6-like [Pyrus x bretschneideri][more]
gi|657954031|ref|XP_008365768.1|9.7e-6597.01PREDICTED: histone H2A.6-like [Malus domestica][more]
gi|595904436|ref|XP_007213976.1|1.6e-6496.27hypothetical protein PRUPE_ppa013202mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002119Histone_H2A
IPR007125Histone_H2A/H2B/H3
IPR009072Histone-fold
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008283 cell proliferation
biological_process GO:0008150 biological_process
biological_process GO:0006342 chromatin silencing
cellular_component GO:0005618 cell wall
cellular_component GO:0005730 nucleolus
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
cellular_component GO:0000790 nuclear chromatin
cellular_component GO:0005694 chromosome
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G014880.1ClCG05G014880.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002119Histone H2APRINTSPR00620HISTONEH2Acoord: 73..87
score: 4.7E-53coord: 59..72
score: 4.7E-53coord: 101..119
score: 4.7E-53coord: 44..59
score: 4.7E-53coord: 15..37
score: 4.7
IPR002119Histone H2ASMARTSM00414h2a4coord: 4..124
score: 7.4
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 12..90
score: 2.8
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 9..123
score: 1.2
IPR009072Histone-foldunknownSSF47113Histone-foldcoord: 9..125
score: 1.5
NoneNo IPR availablePANTHERPTHR23430HISTONE H2Acoord: 1..127
score: 3.5E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG05G014880Csa3G408540Cucumber (Chinese Long) v2cuwcgB234
ClCG05G014880MELO3C018135Melon (DHL92) v3.5.1mewcgB338
ClCG05G014880Cla001720Watermelon (97103) v1wcgwmB285
ClCG05G014880Cla97C05G096070Watermelon (97103) v2wcgwmbB229
ClCG05G014880Bhi09G001644Wax gourdwcgwgoB473
ClCG05G014880CSPI03G23070Wild cucumber (PI 183967)cpiwcgB242
ClCG05G014880Cucsa.267260Cucumber (Gy14) v1cgywcgB466
ClCG05G014880CmaCh09G009200Cucurbita maxima (Rimu)cmawcgB025
ClCG05G014880CmaCh01G011560Cucurbita maxima (Rimu)cmawcgB408
ClCG05G014880CmoCh01G012100Cucurbita moschata (Rifu)cmowcgB407
ClCG05G014880CmoCh09G009160Cucurbita moschata (Rifu)cmowcgB019
ClCG05G014880Lsi04G012500Bottle gourd (USVL1VR-Ls)lsiwcgB285
ClCG05G014880Cp4.1LG02g01240Cucurbita pepo (Zucchini)cpewcgB519
ClCG05G014880Cp4.1LG06g07260Cucurbita pepo (Zucchini)cpewcgB704
ClCG05G014880CsGy3G022060Cucumber (Gy14) v2cgybwcgB218
ClCG05G014880MELO3C018135.2Melon (DHL92) v3.6.1medwcgB332
ClCG05G014880Carg05653Silver-seed gourdcarwcgB0998
ClCG05G014880Carg12790Silver-seed gourdcarwcgB0885
ClCG05G014880CsaV3_3G022800Cucumber (Chinese Long) v3cucwcgB242
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG05G014880Cucurbita maxima (Rimu)cmawcgB298
ClCG05G014880Melon (DHL92) v3.6.1medwcgB149
ClCG05G014880Silver-seed gourdcarwcgB0035
ClCG05G014880Watermelon (97103) v2wcgwmbB219
ClCG05G014880Watermelon (97103) v2wcgwmbB226
ClCG05G014880Watermelon (Charleston Gray)wcgwcgB142