Cla001720 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla001720
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Histone H2A (AHRD V1 ***- E0CT43_VITVI); contains Interpro domain(s) IPR002119 Histone H2A
Location	Chr5 : 21843847 .. 21844446 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGGCAGAGGCAAAACCCTAGGATCCGGAGCCGCCAAGAAGGCCACCTCCAGGAGTAGTAAAGCCGGGTTGCAGTTTCCCGTCGGTCGAATTGCTCGTTTCCTCAAGGCCGGTAAGTACGCCGAGCGTGTCGGTGCGGGTGCTCCGGTCTATCTTGCTGCTGTGCTTGAATACCTCGCCGCTGAGGTATGATAATTTCGAAGTTCCTTTTGGTATCTATCGCTGTGTGGGTTTTGTGTAATTGAGCGCTCCTAATGGATCTAGGGTTTCAAATTTTCCCTAATTCGTGCCCTCTTTCGCAATTTCTTCATGGCTATTTGGGAATTTAATTGATCTTGTTGCTTTTGGGATTAATTCGAGTGTTTTTAATATGTTTAGGTTTTGGAACTCGCTGGAAACGCTGCTAGGGATAACAAGAAGACGCGTATTGTTCCTCGTCATATTCAGCTTGCTGTACGTAACGATGAGGAGCTCAGCAAGCTTTTGGGTGATGTGACTATTGCTAACGGTGGTGTTATGCCCAACATTCACAATCTGCTTCTGCCCAAGAAAACAGGGACTTCATCGAAGAATGCTGGTGGTGATGATGAACCCTAG

mRNA sequence

ATGGCCGGCAGAGGCAAAACCCTAGGATCCGGAGCCGCCAAGAAGGCCACCTCCAGGAGTAGTAAAGCCGGGTTGCAGTTTCCCGTCGGTCGAATTGCTCGTTTCCTCAAGGCCGGTAAGTACGCCGAGCGTGTCGGTGCGGGTGCTCCGGTCTATCTTGCTGCTGTGCTTGAATACCTCGCCGCTGAGGTTTTGGAACTCGCTGGAAACGCTGCTAGGGATAACAAGAAGACGCGTATTGTTCCTCGTCATATTCAGCTTGCTGTACGTAACGATGAGGAGCTCAGCAAGCTTTTGGGTGATGTGACTATTGCTAACGGTGGTGTTATGCCCAACATTCACAATCTGCTTCTGCCCAAGAAAACAGGGACTTCATCGAAGAATGCTGGTGGTGATGATGAACCCTAG

Coding sequence (CDS)

ATGGCCGGCAGAGGCAAAACCCTAGGATCCGGAGCCGCCAAGAAGGCCACCTCCAGGAGTAGTAAAGCCGGGTTGCAGTTTCCCGTCGGTCGAATTGCTCGTTTCCTCAAGGCCGGTAAGTACGCCGAGCGTGTCGGTGCGGGTGCTCCGGTCTATCTTGCTGCTGTGCTTGAATACCTCGCCGCTGAGGTTTTGGAACTCGCTGGAAACGCTGCTAGGGATAACAAGAAGACGCGTATTGTTCCTCGTCATATTCAGCTTGCTGTACGTAACGATGAGGAGCTCAGCAAGCTTTTGGGTGATGTGACTATTGCTAACGGTGGTGTTATGCCCAACATTCACAATCTGCTTCTGCCCAAGAAAACAGGGACTTCATCGAAGAATGCTGGTGGTGATGATGAACCCTAG

Protein sequence

MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSSKNAGGDDEP

Homology

[Close]

BLAST of Cla001720 vs. Swiss-Prot
Match: H2A3_ORYSI (Probable histone H2A.3 OS=Oryza sativa subsp. indica GN=OsI_028288 PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.0e-62
Identity = 123/134 (91.79%), Postives = 125/134 (93.28%), Query Frame = 1


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK +GS AAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKAIGSSAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           K G+S+K A  DDE
Sbjct: 121 KAGSSAKAAAADDE 134

[Close]

BLAST of Cla001720 vs. Swiss-Prot
Match: H2A3_ORYSJ (Probable histone H2A.3 OS=Oryza sativa subsp. japonica GN=Os08g0427700 PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.0e-62
Identity = 123/134 (91.79%), Postives = 125/134 (93.28%), Query Frame = 1


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK +GS AAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKAIGSSAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           K G+S+K A  DDE
Sbjct: 121 KAGSSAKAAAADDE 134

[Close]

BLAST of Cla001720 vs. Swiss-Prot
Match: H2A1_ARATH (Probable histone H2A.1 OS=Arabidopsis thaliana GN=At1g51060 PE=1 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 2.6e-62
Identity = 123/132 (93.18%), Postives = 124/132 (93.94%), Query Frame = 1


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG+AKKAT+RSSKAGLQFPVGRIARFLK GKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGD 133
           KTG S  +A  D
Sbjct: 121 KTGASKPSAEDD 132

[Close]

BLAST of Cla001720 vs. Swiss-Prot
Match: H2A2_ORYSI (Probable histone H2A.2 OS=Oryza sativa subsp. indica GN=OsI_025469 PE=3 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 5.9e-62
Identity = 122/134 (91.04%), Postives = 126/134 (94.03%), Query Frame = 1


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK +GSGAAKKA SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKAIGSGAAKKAMSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIA+GGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           K G S+K A GDD+
Sbjct: 121 KAGGSAKAAAGDDD 134

[Close]

BLAST of Cla001720 vs. Swiss-Prot
Match: H2A2_ORYSJ (Probable histone H2A.2 OS=Oryza sativa subsp. japonica GN=Os07g0545400 PE=2 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 5.9e-62
Identity = 122/134 (91.04%), Postives = 126/134 (94.03%), Query Frame = 1


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK +GSGAAKKA SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKAIGSGAAKKAMSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIA+GGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           K G S+K A GDD+
Sbjct: 121 KAGGSAKAAAGDDD 134

[Close]

BLAST of Cla001720 vs. TrEMBL
Match: A0A0A0LD22_CUCSA (Histone H2A OS=Cucumis sativus GN=Csa_3G408540 PE=3 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.1e-67
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 1


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDEP 136
           KTGTSSKNAGGDDEP
Sbjct: 121 KTGTSSKNAGGDDEP 135

[Close]

BLAST of Cla001720 vs. TrEMBL
Match: W9QQY1_9ROSA (Histone H2A OS=Morus notabilis GN=L484_021167 PE=3 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 5.2e-65
Identity = 131/134 (97.76%), Postives = 132/134 (98.51%), Query Frame = 1


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           KTG SSK AGGDD+
Sbjct: 121 KTGASSKAAGGDDD 134

[Close]

BLAST of Cla001720 vs. TrEMBL
Match: M5X7W0_PRUPE (Histone H2A OS=Prunus persica GN=PRUPE_ppa013202mg PE=3 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.1e-64
Identity = 129/134 (96.27%), Postives = 131/134 (97.76%), Query Frame = 1


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK +GSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKAIGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           K GTSSKN GGDD+
Sbjct: 121 KAGTSSKNVGGDDD 134

[Close]

BLAST of Cla001720 vs. TrEMBL
Match: A0A0B0NVH6_GOSAR (Histone H2A OS=Gossypium arboreum GN=F383_22944 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 7.5e-64
Identity = 128/134 (95.52%), Postives = 132/134 (98.51%), Query Frame = 1


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGA+KKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           K GTSSK +GGD++
Sbjct: 121 KAGTSSKASGGDED 134

[Close]

BLAST of Cla001720 vs. TrEMBL
Match: E0CT43_VITVI (Histone H2A OS=Vitis vinifera GN=VIT_19s0014g05020 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 7.5e-64
Identity = 129/134 (96.27%), Postives = 131/134 (97.76%), Query Frame = 1


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           K G SSK +GGDD+
Sbjct: 121 KAGGSSKASGGDDD 134

[Close]

BLAST of Cla001720 vs. NCBI nr
Match: gi|449468512|ref|XP_004151965.1| (PREDICTED: histone H2A.6 [Cucumis sativus])

HSP 1 Score: 263.8 bits (673), Expect = 1.6e-67
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 1


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDEP 136
           KTGTSSKNAGGDDEP
Sbjct: 121 KTGTSSKNAGGDDEP 135

[Close]

BLAST of Cla001720 vs. NCBI nr
Match: gi|703083793|ref|XP_010092305.1| (putative histone H2A.1 [Morus notabilis])

HSP 1 Score: 255.0 bits (650), Expect = 7.4e-65
Identity = 131/134 (97.76%), Postives = 132/134 (98.51%), Query Frame = 1


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           KTG SSK AGGDD+
Sbjct: 121 KTGASSKAAGGDDD 134

[Close]

BLAST of Cla001720 vs. NCBI nr
Match: gi|694329627|ref|XP_009355568.1| (PREDICTED: histone H2A.6-like [Pyrus x bretschneideri])

HSP 1 Score: 254.6 bits (649), Expect = 9.7e-65
Identity = 130/134 (97.01%), Postives = 131/134 (97.76%), Query Frame = 1


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK LGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKALGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           KTG SSKN GGDD+
Sbjct: 121 KTGASSKNVGGDDD 134

[Close]

BLAST of Cla001720 vs. NCBI nr
Match: gi|657954031|ref|XP_008365768.1| (PREDICTED: histone H2A.6-like [Malus domestica])

HSP 1 Score: 254.6 bits (649), Expect = 9.7e-65
Identity = 130/134 (97.01%), Postives = 131/134 (97.76%), Query Frame = 1


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK LGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKALGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           KTG SSKN GGDD+
Sbjct: 121 KTGASSKNVGGDDD 134

[Close]

BLAST of Cla001720 vs. NCBI nr
Match: gi|595904436|ref|XP_007213976.1| (hypothetical protein PRUPE_ppa013202mg [Prunus persica])

HSP 1 Score: 253.8 bits (647), Expect = 1.6e-64
Identity = 129/134 (96.27%), Postives = 131/134 (97.76%), Query Frame = 1


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK +GSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKAIGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           K GTSSKN GGDD+
Sbjct: 121 KAGTSSKNVGGDDD 134

The following BLAST results are available for this feature:

BLAST of Cla001720 vs. Swiss-Prot


Match Name	E-value	Identity	Description
H2A3_ORYSI	2.0e-62	91.79	Probable histone H2A.3 OS=Oryza sativa subsp. indica GN=OsI_028288 PE=3 SV=1	[more]
H2A3_ORYSJ	2.0e-62	91.79	Probable histone H2A.3 OS=Oryza sativa subsp. japonica GN=Os08g0427700 PE=3 SV=1	[more]
H2A1_ARATH	2.6e-62	93.18	Probable histone H2A.1 OS=Arabidopsis thaliana GN=At1g51060 PE=1 SV=1	[more]
H2A2_ORYSI	5.9e-62	91.04	Probable histone H2A.2 OS=Oryza sativa subsp. indica GN=OsI_025469 PE=3 SV=1	[more]
H2A2_ORYSJ	5.9e-62	91.04	Probable histone H2A.2 OS=Oryza sativa subsp. japonica GN=Os07g0545400 PE=2 SV=1	[more]

BLAST of Cla001720 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LD22_CUCSA	1.1e-67	100.00	Histone H2A OS=Cucumis sativus GN=Csa_3G408540 PE=3 SV=1	[more]
W9QQY1_9ROSA	5.2e-65	97.76	Histone H2A OS=Morus notabilis GN=L484_021167 PE=3 SV=1	[more]
M5X7W0_PRUPE	1.1e-64	96.27	Histone H2A OS=Prunus persica GN=PRUPE_ppa013202mg PE=3 SV=1	[more]
A0A0B0NVH6_GOSAR	7.5e-64	95.52	Histone H2A OS=Gossypium arboreum GN=F383_22944 PE=3 SV=1	[more]
E0CT43_VITVI	7.5e-64	96.27	Histone H2A OS=Vitis vinifera GN=VIT_19s0014g05020 PE=3 SV=1	[more]

BLAST of Cla001720 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449468512\|ref\|XP_004151965.1\|	1.6e-67	100.00	PREDICTED: histone H2A.6 [Cucumis sativus]	[more]
gi\|703083793\|ref\|XP_010092305.1\|	7.4e-65	97.76	putative histone H2A.1 [Morus notabilis]	[more]
gi\|694329627\|ref\|XP_009355568.1\|	9.7e-65	97.01	PREDICTED: histone H2A.6-like [Pyrus x bretschneideri]	[more]
gi\|657954031\|ref\|XP_008365768.1\|	9.7e-65	97.01	PREDICTED: histone H2A.6-like [Malus domestica]	[more]
gi\|595904436\|ref\|XP_007213976.1\|	1.6e-64	96.27	hypothetical protein PRUPE_ppa013202mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002119	Histone_H2A
IPR007125	Histone_H2A/H2B/H3
IPR009072	Histone-fold

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0046982	protein heterodimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008283	cell proliferation
biological_process	GO:0008150	biological_process
biological_process	GO:0006342	chromatin silencing
biological_process	GO:0006325	chromatin organization
cellular_component	GO:0005618	cell wall
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000790	nuclear chromatin
cellular_component	GO:0005694	chromosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU33498	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU76300	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla001720	Cla001720.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU33498	WMU33498	transcribed_cluster
WMU76300	WMU76300	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 73..87 score: 4.7E-53coord: 59..72 score: 4.7E-53coord: 101..119 score: 4.7E-53coord: 44..59 score: 4.7E-53coord: 15..37 score: 4.7
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 4..124 score: 7.4
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 12..90 score: 2.8
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 9..123 score: 1.2
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 9..125 score: 1.5
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 1..127 score: 3.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla001720	Cla97C05G096070	Watermelon (97103) v2	wmwmbB207
Cla001720	Csa3G408540	Cucumber (Chinese Long) v2	cuwmB248
Cla001720	MELO3C018135	Melon (DHL92) v3.5.1	mewmB373
Cla001720	ClCG05G014880	Watermelon (Charleston Gray)	wcgwmB285
Cla001720	CSPI03G23070	Wild cucumber (PI 183967)	cpiwmB247
Cla001720	Cucsa.267260	Cucumber (Gy14) v1	cgywmB492
Cla001720	CmaCh09G009200	Cucurbita maxima (Rimu)	cmawmB030
Cla001720	CmaCh01G011560	Cucurbita maxima (Rimu)	cmawmB435
Cla001720	CmoCh09G009160	Cucurbita moschata (Rifu)	cmowmB022
Cla001720	CmoCh01G012100	Cucurbita moschata (Rifu)	cmowmB428
Cla001720	Lsi04G012500	Bottle gourd (USVL1VR-Ls)	lsiwmB314
Cla001720	Cp4.1LG02g01240	Cucurbita pepo (Zucchini)	cpewmB569
Cla001720	Cp4.1LG06g07260	Cucurbita pepo (Zucchini)	cpewmB769
Cla001720	CsGy3G022060	Cucumber (Gy14) v2	cgybwmB234
Cla001720	MELO3C018135.2	Melon (DHL92) v3.6.1	medwmB369
Cla001720	Carg12790	Silver-seed gourd	carwmB0906
Cla001720	Carg05653	Silver-seed gourd	carwmB1020
Cla001720	CsaV3_3G022800	Cucumber (Chinese Long) v3	cucwmB257
Cla001720	Bhi09G001644	Wax gourd	wgowmB617

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None