CsaV3_UNG227820 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_UNG227820
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	D-3-phosphoglycerate dehydrogenase
Location	scaffold114 : 61463 .. 62329 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGTAAAGAAGTTGGATGGTTGATAATCAAAAAGAAATTATAATTATAATTCCAAAATTCCCCACCTTAAACCCATCTCTCCCTCTTCTATTTTAAGCTCACCTCTGTTCTCTACCATCAGGAGAAACACCGTCCTTCTCTTTTCTTCCATTTCAAACCCTTTTAACTTCCAATCATTTGTCTCTCACAATTCCAAACTAATCCCATCTCACACCCATGGCTTCCTCTTCTTCAAACTCCCTCTTCTCCTCTCCCCATTTCACCTCCTTCAACAGATCTTTTCATTCCAAACCCCCTCTCCTCTCCTTCTCCACCTCCTCTGTTTCTCTCAACCCTCGTCCTCTTCATTCTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAATCGCTGCAGTTTCATTCCTCTCCGTAGCGTTTTGAAAACTCTGGAATCCTCGCATTCGTGTCCCAGAACTCTGATCTCCTTGACCCCACTTCCCCAAATGACAGATCCACCATTTTGGTGGCCGAGAAACTTGGAGAAGCTGGTCTTGAGCTTCTCCGGAGCTTTGGGAATGTTGTCTGCGCTTACGACCTCTCTCCCGAAGAACTTTGCGCCAAGATCTCTTCCTGCGACGCCTTGATTGTTCGAAGTGGTACTAAGGTGAATCGGCAGGTGTTTGAAGCTGCTAAAGGGCGTTTGAAAGTTGTTGGAAGAGCCGGCGTTGGTATTGACAATGTGGATCTACAGGCCGCTACTGAGTTTGGTTGTCTCGTTGTTAATGCCCCAACTGCCAACACCATCGCCGCCGCGAGCATGGAATTGCCTTGCTTACTTCCATGGCTCGAAACGTCGCTCAGGCCGATGCCTCCATGA

mRNA sequence

ATGAAGCGTTTTGAAAACTCTGGAATCCTCGCATTCGTGTCCCAGAACTCTGATCTCCTTGACCCCACTTCCCCAAATGACAGATCCACCATTTTGGTGGCCGAGAAACTTGGAGAAGCTGGTCTTGAGCTTCTCCGGAGCTTTGGGAATGTTGTCTGCGCTTACGACCTCTCTCCCGAAGAACTTTGCGCCAAGATCTCTTCCTGCGACGCCTTGATTGTTCGAAGTGGTACTAAGGTGAATCGGCAGGTGTTTGAAGCTGCTAAAGGGCGTTTGAAAGTTGTTGGAAGAGCCGGCGTTGGTATTGACAATGTGGATCTACAGGCCGCTACTGAGTTTGGTTGTCTCGTTGTTAATGCCCCAACTGCCAACACCATCGCCGCCGCGAGCATGGAATTGCCTTGCTTACTTCCATGGCTCGAAACGTCGCTCAGGCCGATGCCTCCATGA

Coding sequence (CDS)

ATGAAGCGTTTTGAAAACTCTGGAATCCTCGCATTCGTGTCCCAGAACTCTGATCTCCTTGACCCCACTTCCCCAAATGACAGATCCACCATTTTGGTGGCCGAGAAACTTGGAGAAGCTGGTCTTGAGCTTCTCCGGAGCTTTGGGAATGTTGTCTGCGCTTACGACCTCTCTCCCGAAGAACTTTGCGCCAAGATCTCTTCCTGCGACGCCTTGATTGTTCGAAGTGGTACTAAGGTGAATCGGCAGGTGTTTGAAGCTGCTAAAGGGCGTTTGAAAGTTGTTGGAAGAGCCGGCGTTGGTATTGACAATGTGGATCTACAGGCCGCTACTGAGTTTGGTTGTCTCGTTGTTAATGCCCCAACTGCCAACACCATCGCCGCCGCGAGCATGGAATTGCCTTGCTTACTTCCATGGCTCGAAACGTCGCTCAGGCCGATGCCTCCATGA

Protein sequence

MKRFENSGILAFVSQNSDLLDPTSPNDRSTILVAEKLGEAGLELLRSFGNVVCAYDLSPEELCAKISSCDALIVRSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTIAAASMELPCLLPWLETSLRPMPP

Homology

[Close]

BLAST of CsaV3_UNG227820 vs. NCBI nr
Match: XP_004148563.2 (PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic [Cucumis sativus] >KGN58489.1 hypothetical protein Csa_3G651740 [Cucumis sativus])

HSP 1 Score: 233.4 bits (594), Expect = 5.0e-58
Identity = 122/129 (94.57%), Postives = 124/129 (96.12%), Query Frame = 0


Query: 1   MKRFENSGILAFVSQNSDLLDPTSPNDRSTILVAEKLGEAGLELLRSFGNVVCAYDLSPE 60
           +K  E+S   AFVSQNSDLLDPTSPNDRSTILVAEKLGEAGLELLRSFGNVVCAYDLSPE
Sbjct: 66  LKTLESS---AFVSQNSDLLDPTSPNDRSTILVAEKLGEAGLELLRSFGNVVCAYDLSPE 125

Query: 61  ELCAKISSCDALIVRSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNA 120
           ELCAKISSCDALIVRSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNA
Sbjct: 126 ELCAKISSCDALIVRSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNA 185

Query: 121 PTANTIAAA 130
           PTANTIAAA
Sbjct: 186 PTANTIAAA 191

[Close]

BLAST of CsaV3_UNG227820 vs. NCBI nr
Match: XP_008463985.1 (PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Cucumis melo])

HSP 1 Score: 232.3 bits (591), Expect = 1.1e-57
Identity = 121/129 (93.80%), Postives = 124/129 (96.12%), Query Frame = 0


Query: 1   MKRFENSGILAFVSQNSDLLDPTSPNDRSTILVAEKLGEAGLELLRSFGNVVCAYDLSPE 60
           +K  E+S   AFVSQNSDL+DPTSPNDRSTILVAEKLGEAGLELLRSFGNVVCAYDLSPE
Sbjct: 66  LKTLESS---AFVSQNSDLVDPTSPNDRSTILVAEKLGEAGLELLRSFGNVVCAYDLSPE 125

Query: 61  ELCAKISSCDALIVRSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNA 120
           ELCAKISSCDALIVRSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNA
Sbjct: 126 ELCAKISSCDALIVRSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNA 185

Query: 121 PTANTIAAA 130
           PTANTIAAA
Sbjct: 186 PTANTIAAA 191

[Close]

BLAST of CsaV3_UNG227820 vs. NCBI nr
Match: XP_023528075.1 (D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 214.9 bits (546), Expect = 1.8e-52
Identity = 109/116 (93.97%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 14  SQNSDLLDPTSPNDRSTILVAEKLGEAGLELLRSFGNVVCAYDLSPEELCAKISSCDALI 73
           +++SDL+DPT PNDRSTILVAEKLGEAGL+LLRSFGNV CAYDLSPEELCAKISSCDALI
Sbjct: 69  ARSSDLVDPTFPNDRSTILVAEKLGEAGLKLLRSFGNVDCAYDLSPEELCAKISSCDALI 128

Query: 74  VRSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTIAAA 130
           VRSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTIAAA
Sbjct: 129 VRSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTIAAA 184

[Close]

BLAST of CsaV3_UNG227820 vs. NCBI nr
Match: XP_022980570.1 (D-3-phosphoglycerate dehydrogenase 2, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 214.5 bits (545), Expect = 2.4e-52
Identity = 109/115 (94.78%), Postives = 113/115 (98.26%), Query Frame = 0


Query: 15  QNSDLLDPTSPNDRSTILVAEKLGEAGLELLRSFGNVVCAYDLSPEELCAKISSCDALIV 74
           ++SDL+DPT PNDRSTILVAEKLGEAGL+LLRSFGNV CAYDLSPEELCAKISSCDALIV
Sbjct: 70  RSSDLVDPTFPNDRSTILVAEKLGEAGLKLLRSFGNVDCAYDLSPEELCAKISSCDALIV 129

Query: 75  RSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTIAAA 130
           RSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTIAAA
Sbjct: 130 RSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTIAAA 184

[Close]

BLAST of CsaV3_UNG227820 vs. NCBI nr
Match: XP_022956179.1 (D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 213.4 bits (542), Expect = 5.3e-52
Identity = 108/116 (93.10%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 14  SQNSDLLDPTSPNDRSTILVAEKLGEAGLELLRSFGNVVCAYDLSPEELCAKISSCDALI 73
           +++SDL+DPT PNDRSTILVAEKLGEAGL+LLR FGNV CAYDLSPEELCAKISSCDALI
Sbjct: 69  ARSSDLVDPTFPNDRSTILVAEKLGEAGLKLLRGFGNVDCAYDLSPEELCAKISSCDALI 128

Query: 74  VRSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTIAAA 130
           VRSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTIAAA
Sbjct: 129 VRSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTIAAA 184

[Close]

BLAST of CsaV3_UNG227820 vs. TAIR10
Match: AT1G17745.2 (D-3-phosphoglycerate dehydrogenase)

HSP 1 Score: 167.9 bits (424), Expect = 4.7e-42
Identity = 88/117 (75.21%), Postives = 98/117 (83.76%), Query Frame = 0


Query: 13  VSQNSDLLDPTSPNDRSTILVAEKLGEAGLELLRSFGNVVCAYDLSPEELCAKISSCDAL 72
           V  +SD  +PT P  R  ILV EKLGEAG+ LLR FG+V C+YDLSPE+L  K++  DAL
Sbjct: 69  VGSDSDEYNPTLPKPR--ILVTEKLGEAGVNLLREFGDVDCSYDLSPEDLKKKVAESDAL 128

Query: 73  IVRSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTIAAA 130
           IVRSGTKV R+VFEAAKGRLKVVGRAGVGIDNVDLQAATE GCLVVNAPTANT+AAA
Sbjct: 129 IVRSGTKVTREVFEAAKGRLKVVGRAGVGIDNVDLQAATEHGCLVVNAPTANTVAAA 183

[Close]

BLAST of CsaV3_UNG227820 vs. TAIR10
Match: AT3G19480.1 (D-3-phosphoglycerate dehydrogenase)

HSP 1 Score: 159.5 bits (402), Expect = 1.7e-39
Identity = 78/99 (78.79%), Postives = 89/99 (89.90%), Query Frame = 0


Query: 31  ILVAEKLGEAGLELLRSFGNVVCAYDLSPEELCAKISSCDALIVRSGTKVNRQVFEAAKG 90
           ILV EKLG+AG++LL+ + NV C+YDLS EELC KIS CDALIVRSGTKV R VFE+++G
Sbjct: 49  ILVTEKLGQAGIDLLKKYANVDCSYDLSLEELCTKISLCDALIVRSGTKVGRDVFESSRG 108

Query: 91  RLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTIAAA 130
           RLKVVGRAGVGIDNVDL AATE+GCLVVNAPTANT+AAA
Sbjct: 109 RLKVVGRAGVGIDNVDLAAATEYGCLVVNAPTANTVAAA 147

[Close]

BLAST of CsaV3_UNG227820 vs. TAIR10
Match: AT4G34200.1 (D-3-phosphoglycerate dehydrogenase)

HSP 1 Score: 158.7 bits (400), Expect = 2.8e-39
Identity = 80/107 (74.77%), Postives = 91/107 (85.05%), Query Frame = 0


Query: 23  TSPNDRSTILVAEKLGEAGLELLRSFGNVVCAYDLSPEELCAKISSCDALIVRSGTKVNR 82
           T    + TILVAEKLG+AG++LL    NV C+Y+++PEEL  KIS CDALIVRSGTKV R
Sbjct: 56  TGDGSKPTILVAEKLGDAGIKLLEDVANVDCSYNMTPEELNIKISLCDALIVRSGTKVGR 115

Query: 83  QVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTIAAA 130
           +VFE++ GRLKVVGRAGVGIDNVDL AATEFGCLVVNAPTANTIAAA
Sbjct: 116 EVFESSHGRLKVVGRAGVGIDNVDLSAATEFGCLVVNAPTANTIAAA 162

[Close]

BLAST of CsaV3_UNG227820 vs. Swiss-Prot
Match: sp|O04130|SERA2_ARATH (D-3-phosphoglycerate dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PGDH2 PE=1 SV=2)

HSP 1 Score: 167.9 bits (424), Expect = 8.4e-41
Identity = 88/117 (75.21%), Postives = 98/117 (83.76%), Query Frame = 0


Query: 13  VSQNSDLLDPTSPNDRSTILVAEKLGEAGLELLRSFGNVVCAYDLSPEELCAKISSCDAL 72
           V  +SD  +PT P  R  ILV EKLGEAG+ LLR FG+V C+YDLSPE+L  K++  DAL
Sbjct: 69  VGSDSDEYNPTLPKPR--ILVTEKLGEAGVNLLREFGDVDCSYDLSPEDLKKKVAESDAL 128

Query: 73  IVRSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTIAAA 130
           IVRSGTKV R+VFEAAKGRLKVVGRAGVGIDNVDLQAATE GCLVVNAPTANT+AAA
Sbjct: 129 IVRSGTKVTREVFEAAKGRLKVVGRAGVGIDNVDLQAATEHGCLVVNAPTANTVAAA 183

[Close]

BLAST of CsaV3_UNG227820 vs. Swiss-Prot
Match: sp|Q9LT69|SERA3_ARATH (D-3-phosphoglycerate dehydrogenase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PGDH3 PE=1 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.0e-38
Identity = 78/99 (78.79%), Postives = 89/99 (89.90%), Query Frame = 0


Query: 31  ILVAEKLGEAGLELLRSFGNVVCAYDLSPEELCAKISSCDALIVRSGTKVNRQVFEAAKG 90
           ILV EKLG+AG++LL+ + NV C+YDLS EELC KIS CDALIVRSGTKV R VFE+++G
Sbjct: 49  ILVTEKLGQAGIDLLKKYANVDCSYDLSLEELCTKISLCDALIVRSGTKVGRDVFESSRG 108

Query: 91  RLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTIAAA 130
           RLKVVGRAGVGIDNVDL AATE+GCLVVNAPTANT+AAA
Sbjct: 109 RLKVVGRAGVGIDNVDLAAATEYGCLVVNAPTANTVAAA 147

[Close]

BLAST of CsaV3_UNG227820 vs. Swiss-Prot
Match: sp|O49485|SERA1_ARATH (D-3-phosphoglycerate dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PGDH1 PE=1 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 5.1e-38
Identity = 80/107 (74.77%), Postives = 91/107 (85.05%), Query Frame = 0


Query: 23  TSPNDRSTILVAEKLGEAGLELLRSFGNVVCAYDLSPEELCAKISSCDALIVRSGTKVNR 82
           T    + TILVAEKLG+AG++LL    NV C+Y+++PEEL  KIS CDALIVRSGTKV R
Sbjct: 56  TGDGSKPTILVAEKLGDAGIKLLEDVANVDCSYNMTPEELNIKISLCDALIVRSGTKVGR 115

Query: 83  QVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTIAAA 130
           +VFE++ GRLKVVGRAGVGIDNVDL AATEFGCLVVNAPTANTIAAA
Sbjct: 116 EVFESSHGRLKVVGRAGVGIDNVDLSAATEFGCLVVNAPTANTIAAA 162

[Close]

BLAST of CsaV3_UNG227820 vs. Swiss-Prot
Match: sp|Q58424|SERA_METJA (D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=serA PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 5.7e-21
Identity = 54/107 (50.47%), Postives = 74/107 (69.16%), Query Frame = 0


Query: 31  ILVAEKLGEAGLELLRSFGNVVCAYDLSPEELCAKISSCDALIVRSGTKVNRQVFEAAKG 90
           ILV + L E  +++L   G V  A  L+ EEL  KI   D L+VRSGTKV R V E A+ 
Sbjct: 4   ILVTDPLHEDAIKILEEVGEVEVATGLTKEELLEKIKDADVLVVRSGTKVTRDVIEKAE- 63

Query: 91  RLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTIAAASMELPCLL 138
           +LKV+GRAGVG+DN+D++AATE G +VVNAP A++I+ A + +  +L
Sbjct: 64  KLKVIGRAGVGVDNIDVEAATEKGIIVVNAPDASSISVAELTMGLML 109

[Close]

BLAST of CsaV3_UNG227820 vs. Swiss-Prot
Match: sp|O27051|SERA_METTH (D-3-phosphoglycerate dehydrogenase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) OX=187420 GN=serA PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 9.0e-19
Identity = 49/110 (44.55%), Postives = 71/110 (64.55%), Query Frame = 0


Query: 28  RSTILVAEKLGEAGLELLRSFGNVVCAYDLSPEELCAKISSCDALIVRSGTKVNRQVFEA 87
           R  +L+A+ + E G+  L     VV    ++PEEL   I   DA++VRS TKV R+V EA
Sbjct: 3   RMKVLIADSINEKGISELEEVAEVVVNTTITPEELLDAIKDFDAIVVRSRTKVTREVIEA 62

Query: 88  AKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTIAAASMELPCLL 138
           A  RLK++ RAGVG+DNVD++AAT+ G +V+NAP + +I  A   +  +L
Sbjct: 63  AP-RLKIIARAGVGVDNVDVKAATDRGIMVINAPESTSITVAEHSIGLML 111

[Close]

BLAST of CsaV3_UNG227820 vs. TrEMBL
Match: tr|A0A0A0LC35|A0A0A0LC35_CUCSA (D-3-phosphoglycerate dehydrogenase OS=Cucumis sativus OX=3659 GN=Csa_3G651740 PE=3 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 3.3e-58
Identity = 122/129 (94.57%), Postives = 124/129 (96.12%), Query Frame = 0


Query: 1   MKRFENSGILAFVSQNSDLLDPTSPNDRSTILVAEKLGEAGLELLRSFGNVVCAYDLSPE 60
           +K  E+S   AFVSQNSDLLDPTSPNDRSTILVAEKLGEAGLELLRSFGNVVCAYDLSPE
Sbjct: 66  LKTLESS---AFVSQNSDLLDPTSPNDRSTILVAEKLGEAGLELLRSFGNVVCAYDLSPE 125

Query: 61  ELCAKISSCDALIVRSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNA 120
           ELCAKISSCDALIVRSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNA
Sbjct: 126 ELCAKISSCDALIVRSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNA 185

Query: 121 PTANTIAAA 130
           PTANTIAAA
Sbjct: 186 PTANTIAAA 191

[Close]

BLAST of CsaV3_UNG227820 vs. TrEMBL
Match: tr|A0A1S3CKG7|A0A1S3CKG7_CUCME (D-3-phosphoglycerate dehydrogenase OS=Cucumis melo OX=3656 GN=LOC103501977 PE=3 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 7.3e-58
Identity = 121/129 (93.80%), Postives = 124/129 (96.12%), Query Frame = 0


Query: 1   MKRFENSGILAFVSQNSDLLDPTSPNDRSTILVAEKLGEAGLELLRSFGNVVCAYDLSPE 60
           +K  E+S   AFVSQNSDL+DPTSPNDRSTILVAEKLGEAGLELLRSFGNVVCAYDLSPE
Sbjct: 66  LKTLESS---AFVSQNSDLVDPTSPNDRSTILVAEKLGEAGLELLRSFGNVVCAYDLSPE 125

Query: 61  ELCAKISSCDALIVRSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNA 120
           ELCAKISSCDALIVRSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNA
Sbjct: 126 ELCAKISSCDALIVRSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNA 185

Query: 121 PTANTIAAA 130
           PTANTIAAA
Sbjct: 186 PTANTIAAA 191

[Close]

BLAST of CsaV3_UNG227820 vs. TrEMBL
Match: tr|M5XBE0|M5XBE0_PRUPE (D-3-phosphoglycerate dehydrogenase OS=Prunus persica OX=3760 GN=PRUPE_3G168100 PE=3 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 3.2e-45
Identity = 96/114 (84.21%), Postives = 104/114 (91.23%), Query Frame = 0


Query: 16  NSDLLDPTSPNDRSTILVAEKLGEAGLELLRSFGNVVCAYDLSPEELCAKISSCDALIVR 75
           NS  L PTS +   TILV+EKLGEAGL++LR FGN+ CAY+LSPEELCAKIS+CDALIVR
Sbjct: 82  NSQNLKPTSSDSTPTILVSEKLGEAGLQVLRGFGNLECAYNLSPEELCAKISTCDALIVR 141

Query: 76  SGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTIAAA 130
           SGTKV RQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANT+AAA
Sbjct: 142 SGTKVTRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTVAAA 195

[Close]

BLAST of CsaV3_UNG227820 vs. TrEMBL
Match: tr|A0A2I4DSK4|A0A2I4DSK4_9ROSI (D-3-phosphoglycerate dehydrogenase OS=Juglans regia OX=51240 GN=LOC108983060 PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 4.2e-45
Identity = 96/110 (87.27%), Postives = 102/110 (92.73%), Query Frame = 0


Query: 20  LDPTSPNDRSTILVAEKLGEAGLELLRSFGNVVCAYDLSPEELCAKISSCDALIVRSGTK 79
           LD  S N R TILV+EKLGEAGLE+LRSFGNV C YDLSP++LC+KISSCDALIVRSGTK
Sbjct: 82  LDSGSSNPRPTILVSEKLGEAGLEVLRSFGNVECLYDLSPDDLCSKISSCDALIVRSGTK 141

Query: 80  VNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTIAAA 130
           V RQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANT+AAA
Sbjct: 142 VTRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTVAAA 191

[Close]

BLAST of CsaV3_UNG227820 vs. TrEMBL
Match: tr|A0A2P6RZT7|A0A2P6RZT7_ROSCH (D-3-phosphoglycerate dehydrogenase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0150301 PE=3 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.1e-44
Identity = 95/117 (81.20%), Postives = 105/117 (89.74%), Query Frame = 0


Query: 13  VSQNSDLLDPTSPNDRSTILVAEKLGEAGLELLRSFGNVVCAYDLSPEELCAKISSCDAL 72
           VS + D     S N + TILV+EKLGEAGLE+LR FGN+ CAY+L+PEELCAKIS+CDAL
Sbjct: 80  VSTSGDRTKLPSSNAKPTILVSEKLGEAGLEVLRKFGNLECAYNLTPEELCAKISACDAL 139

Query: 73  IVRSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTIAAA 130
           IVRSGTKVNRQVFEA+KGRLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANT+AAA
Sbjct: 140 IVRSGTKVNRQVFEASKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTVAAA 196

The following BLAST results are available for this feature:

BLAST of CsaV3_UNG227820 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148563.2	5.0e-58	94.57	PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic [Cucumis sativus]...	[more]
XP_008463985.1	1.1e-57	93.80	PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Cucumis mel...	[more]
XP_023528075.1	1.8e-52	93.97	D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Cucurbita pepo subsp. ...	[more]
XP_022980570.1	2.4e-52	94.78	D-3-phosphoglycerate dehydrogenase 2, chloroplastic-like [Cucurbita maxima]	[more]
XP_022956179.1	5.3e-52	93.10	D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Cucurbita moschata]	[more]

BLAST of CsaV3_UNG227820 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G17745.2	4.7e-42	75.21	D-3-phosphoglycerate dehydrogenase	[more]
AT3G19480.1	1.7e-39	78.79	D-3-phosphoglycerate dehydrogenase	[more]
AT4G34200.1	2.8e-39	74.77	D-3-phosphoglycerate dehydrogenase	[more]

BLAST of CsaV3_UNG227820 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O04130\|SERA2_ARATH	8.4e-41	75.21	D-3-phosphoglycerate dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
sp\|Q9LT69\|SERA3_ARATH	3.0e-38	78.79	D-3-phosphoglycerate dehydrogenase 3, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
sp\|O49485\|SERA1_ARATH	5.1e-38	74.77	D-3-phosphoglycerate dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
sp\|Q58424\|SERA_METJA	5.7e-21	50.47	D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii (strain ATCC...	[more]
sp\|O27051\|SERA_METTH	9.0e-19	44.55	D-3-phosphoglycerate dehydrogenase OS=Methanothermobacter thermautotrophicus (st...	[more]

BLAST of CsaV3_UNG227820 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LC35\|A0A0A0LC35_CUCSA	3.3e-58	94.57	D-3-phosphoglycerate dehydrogenase OS=Cucumis sativus OX=3659 GN=Csa_3G651740 PE...	[more]
tr\|A0A1S3CKG7\|A0A1S3CKG7_CUCME	7.3e-58	93.80	D-3-phosphoglycerate dehydrogenase OS=Cucumis melo OX=3656 GN=LOC103501977 PE=3 ...	[more]
tr\|M5XBE0\|M5XBE0_PRUPE	3.2e-45	84.21	D-3-phosphoglycerate dehydrogenase OS=Prunus persica OX=3760 GN=PRUPE_3G168100 P...	[more]
tr\|A0A2I4DSK4\|A0A2I4DSK4_9ROSI	4.2e-45	87.27	D-3-phosphoglycerate dehydrogenase OS=Juglans regia OX=51240 GN=LOC108983060 PE=...	[more]
tr\|A0A2P6RZT7\|A0A2P6RZT7_ROSCH	2.1e-44	81.20	D-3-phosphoglycerate dehydrogenase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process
GO:0008152	metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0051287	NAD binding

Vocabulary: **INTERPRO**
Term	Definition
IPR006139	D-isomer_2_OHA_DH_cat_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006544	glycine metabolic process
biological_process	GO:0006564	L-serine biosynthetic process
biological_process	GO:0006566	threonine metabolic process
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0051287	NAD binding
molecular_function	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
molecular_function	GO:0016597	amino acid binding
molecular_function	GO:0004617	phosphoglycerate dehydrogenase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_UNG227820.1	CsaV3_UNG227820.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006139	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain	PFAM	PF00389	2-Hacid_dh	coord: 31..129 e-value: 3.5E-27 score: 94.6
None	No IPR available	GENE3D	G3DSA:3.40.50.720		coord: 21..137 e-value: 1.2E-32 score: 114.2
None	No IPR available	PANTHER	PTHR42938	FAMILY NOT NAMED	coord: 20..131
None	No IPR available	PANTHER	PTHR42938:SF14	D-3-PHOSPHOGLYCERATE DEHYDROGENASE 1, CHLOROPLASTIC-RELATED	coord: 20..131
None	No IPR available	SUPERFAMILY	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like	coord: 30..131

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_UNG227820	CSPI03G28800	Wild cucumber (PI 183967)	cpicucB133
CsaV3_UNG227820	Cucsa.192110	Cucumber (Gy14) v1	cgycucB306
CsaV3_UNG227820	CmaCh14G012300	Cucurbita maxima (Rimu)	cmacucB0275
CsaV3_UNG227820	CmaCh01G000240	Cucurbita maxima (Rimu)	cmacucB0523
CsaV3_UNG227820	CmoCh14G012580	Cucurbita moschata (Rifu)	cmocucB0264
CsaV3_UNG227820	CmoCh01G000270	Cucurbita moschata (Rifu)	cmocucB0509
CsaV3_UNG227820	Cp4.1LG02g17550	Cucurbita pepo (Zucchini)	cpecucB0671
CsaV3_UNG227820	Cp4.1LG03g14660	Cucurbita pepo (Zucchini)	cpecucB0743
CsaV3_UNG227820	CsGy3G026730	Cucumber (Gy14) v2	cgybcucB108
CsaV3_UNG227820	Carg06407	Silver-seed gourd	carcucB0133
CsaV3_UNG227820	Carg04337	Silver-seed gourd	carcucB0222
CsaV3_UNG227820	Cla012565	Watermelon (97103) v1	cucwmB110
CsaV3_UNG227820	MELO3C025791	Melon (DHL92) v3.5.1	cucmeB093
CsaV3_UNG227820	ClCG07G014180	Watermelon (Charleston Gray)	cucwcgB103
CsaV3_UNG227820	Lsi07G006290	Bottle gourd (USVL1VR-Ls)	cuclsiB097
CsaV3_UNG227820	MELO3C025791.2	Melon (DHL92) v3.6.1	cucmedB086
CsaV3_UNG227820	Cla97C07G141010	Watermelon (97103) v2	cucwmbB096
CsaV3_UNG227820	Bhi01G002198	Wax gourd	cucwgoB127

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CsaV3_UNG227820	CsaV3_3G031190	Cucumber (Chinese Long) v3	cuccucB063

The following block(s) are covering this gene:

None