Lsi07G006290 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi07G006290
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionD-3-phosphoglycerate dehydrogenase family protein
Locationchr07 : 6739162 .. 6739809 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCTCTTCTGCAAAATCCCTCTTTTCCTCTCCCCATTTCACCTCATTCAACAGATCCTCCCATTCCAAATCCCCTCTTCTCTCCTTTTCCAAATCCTCTGTTTCTCTCAATCTTCACCCTCTTCATTCTTCTTATTCTTCTTCTTCTTCTTCTAACCGCTGCAATTTCATTCCACTTCGTAGCGTTTTGAAAACTGTTGAATCCTCCGAATTAGAGGTTAAGAACTCTGATCTCGTCGACCCCACTTTCCCTAATGACAGATCCACCATTTTGGTGGCCGAGAAACTTGGAGAGGCCGGTCTTAAGCTTCTCCGGAGCTTTGGGAACGTTGAGTGTGCTTACGACCTCTCGCCGGAAGATCTTTGCGCCAAGATCTCTTCGTGCGACGCTTTGATTGTCCGAAGTGGCACCAAGGTGAACAGGCAGGTCTTTGAGGCTGCAAAAGGGCGTTTGAAAGTTGTTGGAAGAGCCGGCGTTGGTATTGACAATGTGGATCTGCAGGCCGCCACTGAGTTCGGTTGTCTCGTTGTTAATGCCCCAACTGCCAACACCATCGCCGCCGCCGAGCATGGAATTGCTTTGCTTACTGCCATGGCCAGAAACGTCGCTCAGGCCGATGCCTCCATGAAAGCAGGTCGGTAA

mRNA sequence

ATGGCTTCCTCTTCTGCAAAATCCCTCTTTTCCTCTCCCCATTTCACCTCATTCAACAGATCCTCCCATTCCAAATCCCCTCTTCTCTCCTTTTCCAAATCCTCTGTTTCTCTCAATCTTCACCCTCTTCATTCTTCTTATTCTTCTTCTTCTTCTTCTAACCGCTGCAATTTCATTCCACTTCGTAGCGTTTTGAAAACTGTTGAATCCTCCGAATTAGAGGTTAAGAACTCTGATCTCGTCGACCCCACTTTCCCTAATGACAGATCCACCATTTTGGTGGCCGAGAAACTTGGAGAGGCCGGTCTTAAGCTTCTCCGGAGCTTTGGGAACGTTGAGTGTGCTTACGACCTCTCGCCGGAAGATCTTTGCGCCAAGATCTCTTCGTGCGACGCTTTGATTGTCCGAAGTGGCACCAAGGTGAACAGGCAGGTCTTTGAGGCTGCAAAAGGGCGTTTGAAAGTTGTTGGAAGAGCCGGCGTTGGTATTGACAATGTGGATCTGCAGGCCGCCACTGAGTTCGGTTGTCTCGTTGTTAATGCCCCAACTGCCAACACCATCGCCGCCGCCGAGCATGGAATTGCTTTGCTTACTGCCATGGCCAGAAACGTCGCTCAGGCCGATGCCTCCATGAAAGCAGGTCGGTAA

Coding sequence (CDS)

ATGGCTTCCTCTTCTGCAAAATCCCTCTTTTCCTCTCCCCATTTCACCTCATTCAACAGATCCTCCCATTCCAAATCCCCTCTTCTCTCCTTTTCCAAATCCTCTGTTTCTCTCAATCTTCACCCTCTTCATTCTTCTTATTCTTCTTCTTCTTCTTCTAACCGCTGCAATTTCATTCCACTTCGTAGCGTTTTGAAAACTGTTGAATCCTCCGAATTAGAGGTTAAGAACTCTGATCTCGTCGACCCCACTTTCCCTAATGACAGATCCACCATTTTGGTGGCCGAGAAACTTGGAGAGGCCGGTCTTAAGCTTCTCCGGAGCTTTGGGAACGTTGAGTGTGCTTACGACCTCTCGCCGGAAGATCTTTGCGCCAAGATCTCTTCGTGCGACGCTTTGATTGTCCGAAGTGGCACCAAGGTGAACAGGCAGGTCTTTGAGGCTGCAAAAGGGCGTTTGAAAGTTGTTGGAAGAGCCGGCGTTGGTATTGACAATGTGGATCTGCAGGCCGCCACTGAGTTCGGTTGTCTCGTTGTTAATGCCCCAACTGCCAACACCATCGCCGCCGCCGAGCATGGAATTGCTTTGCTTACTGCCATGGCCAGAAACGTCGCTCAGGCCGATGCCTCCATGAAAGCAGGTCGGTAA

Protein sequence

MASSSAKSLFSSPHFTSFNRSSHSKSPLLSFSKSSVSLNLHPLHSSYSSSSSSNRCNFIPLRSVLKTVESSELEVKNSDLVDPTFPNDRSTILVAEKLGEAGLKLLRSFGNVECAYDLSPEDLCAKISSCDALIVRSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTIAAAEHGIALLTAMARNVAQADASMKAGR
BLAST of Lsi07G006290 vs. Swiss-Prot
Match: SERA2_ARATH (D-3-phosphoglycerate dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana GN=PGDH2 PE=1 SV=2)

HSP 1 Score: 211.5 bits (537), Expect = 9.4e-54
Identity = 120/181 (66.30%), Postives = 137/181 (75.69%), Query Frame = 1

Query: 43  LHSSYSSSSSSNRCNFIPLRSVLKTVESSELEVKN--------SDLVDPTFPNDRSTILV 102
           LH  Y++S          + + LKTVE + L   N        SD  +PT P  R  ILV
Sbjct: 35  LHRRYATS-----VKLTAISAALKTVEQTTLTEDNRFSTVGSDSDEYNPTLPKPR--ILV 94

Query: 103 AEKLGEAGLKLLRSFGNVECAYDLSPEDLCAKISSCDALIVRSGTKVNRQVFEAAKGRLK 162
            EKLGEAG+ LLR FG+V+C+YDLSPEDL  K++  DALIVRSGTKV R+VFEAAKGRLK
Sbjct: 95  TEKLGEAGVNLLREFGDVDCSYDLSPEDLKKKVAESDALIVRSGTKVTREVFEAAKGRLK 154

Query: 163 VVGRAGVGIDNVDLQAATEFGCLVVNAPTANTIAAAEHGIALLTAMARNVAQADASMKAG 216
           VVGRAGVGIDNVDLQAATE GCLVVNAPTANT+AAAEHGIALL +MARNVAQADAS+KAG
Sbjct: 155 VVGRAGVGIDNVDLQAATEHGCLVVNAPTANTVAAAEHGIALLASMARNVAQADASIKAG 208

BLAST of Lsi07G006290 vs. Swiss-Prot
Match: SERA3_ARATH (D-3-phosphoglycerate dehydrogenase 3, chloroplastic OS=Arabidopsis thaliana GN=PGDH3 PE=1 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.8e-49
Identity = 114/185 (61.62%), Postives = 136/185 (73.51%), Query Frame = 1

Query: 35  SVSLNLHPLHSSYSSSSSSNRCNFIPLRS----VLKTVESSELEVKNSDLVDPTFPNDRS 94
           + SLNL  + SS SS   +   +  P+R     +L T  SS                 + 
Sbjct: 2   ATSLNLSSIFSS-SSRLVTTPSSVFPIRQRRRIILVTSSSSG-------------GGGKP 61

Query: 95  TILVAEKLGEAGLKLLRSFGNVECAYDLSPEDLCAKISSCDALIVRSGTKVNRQVFEAAK 154
           TILV EKLG+AG+ LL+ + NV+C+YDLS E+LC KIS CDALIVRSGTKV R VFE+++
Sbjct: 62  TILVTEKLGQAGIDLLKKYANVDCSYDLSLEELCTKISLCDALIVRSGTKVGRDVFESSR 121

Query: 155 GRLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTIAAAEHGIALLTAMARNVAQADAS 214
           GRLKVVGRAGVGIDNVDL AATE+GCLVVNAPTANT+AAAEHGIALLTAMARN+AQADAS
Sbjct: 122 GRLKVVGRAGVGIDNVDLAAATEYGCLVVNAPTANTVAAAEHGIALLTAMARNIAQADAS 172

Query: 215 MKAGR 216
           +KAG+
Sbjct: 182 IKAGK 172

BLAST of Lsi07G006290 vs. Swiss-Prot
Match: SERA1_ARATH (D-3-phosphoglycerate dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=PGDH1 PE=1 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 2.0e-48
Identity = 109/173 (63.01%), Postives = 129/173 (74.57%), Query Frame = 1

Query: 42  PLHSSYSSSSSSNRCNFIPLRSVLKTVESSELEVKNSDLVDPTFPNDRSTILVAEKLGEA 101
           PL S+ S +  S   N +  R VL +  + +                + TILVAEKLG+A
Sbjct: 28  PLPSAISVAFPSRGRNTLQRRLVLVSCSTGD--------------GSKPTILVAEKLGDA 87

Query: 102 GLKLLRSFGNVECAYDLSPEDLCAKISSCDALIVRSGTKVNRQVFEAAKGRLKVVGRAGV 161
           G+KLL    NV+C+Y+++PE+L  KIS CDALIVRSGTKV R+VFE++ GRLKVVGRAGV
Sbjct: 88  GIKLLEDVANVDCSYNMTPEELNIKISLCDALIVRSGTKVGREVFESSHGRLKVVGRAGV 147

Query: 162 GIDNVDLQAATEFGCLVVNAPTANTIAAAEHGIALLTAMARNVAQADASMKAG 215
           GIDNVDL AATEFGCLVVNAPTANTIAAAEHGIAL+ AMARNVAQADAS+KAG
Sbjct: 148 GIDNVDLSAATEFGCLVVNAPTANTIAAAEHGIALMAAMARNVAQADASVKAG 186

BLAST of Lsi07G006290 vs. Swiss-Prot
Match: SERA_METJA (D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=serA PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.7e-26
Identity = 66/123 (53.66%), Postives = 87/123 (70.73%), Query Frame = 1

Query: 92  ILVAEKLGEAGLKLLRSFGNVECAYDLSPEDLCAKISSCDALIVRSGTKVNRQVFEAAKG 151
           ILV + L E  +K+L   G VE A  L+ E+L  KI   D L+VRSGTKV R V E A+ 
Sbjct: 4   ILVTDPLHEDAIKILEEVGEVEVATGLTKEELLEKIKDADVLVVRSGTKVTRDVIEKAE- 63

Query: 152 RLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTIAAAEHGIALLTAMARNVAQADASM 211
           +LKV+GRAGVG+DN+D++AATE G +VVNAP A++I+ AE  + L+ A ARN+ QA AS+
Sbjct: 64  KLKVIGRAGVGVDNIDVEAATEKGIIVVNAPDASSISVAELTMGLMLAAARNIPQATASL 123

Query: 212 KAG 215
           K G
Sbjct: 124 KRG 125

BLAST of Lsi07G006290 vs. Swiss-Prot
Match: SERA_METTH (D-3-phosphoglycerate dehydrogenase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=serA PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.5e-24
Identity = 59/127 (46.46%), Postives = 85/127 (66.93%), Query Frame = 1

Query: 89  RSTILVAEKLGEAGLKLLRSFGNVECAYDLSPEDLCAKISSCDALIVRSGTKVNRQVFEA 148
           R  +L+A+ + E G+  L     V     ++PE+L   I   DA++VRS TKV R+V EA
Sbjct: 3   RMKVLIADSINEKGISELEEVAEVVVNTTITPEELLDAIKDFDAIVVRSRTKVTREVIEA 62

Query: 149 AKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTIAAAEHGIALLTAMARNVAQAD 208
           A  RLK++ RAGVG+DNVD++AAT+ G +V+NAP + +I  AEH I L+ A+AR +A AD
Sbjct: 63  AP-RLKIIARAGVGVDNVDVKAATDRGIMVINAPESTSITVAEHSIGLMLALARKIAIAD 122

Query: 209 ASMKAGR 216
            S+K G+
Sbjct: 123 RSVKEGK 128

BLAST of Lsi07G006290 vs. TrEMBL
Match: A0A0A0LC35_CUCSA (D-3-phosphoglycerate dehydrogenase OS=Cucumis sativus GN=Csa_3G651740 PE=3 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 2.5e-93
Identity = 193/216 (89.35%), Postives = 202/216 (93.52%), Query Frame = 1

Query: 1   MASSSAKSLFSSPHFTSFNRSSHSKSPLLSFSKSSVSLNLHPLHSSYSSSSSS-NRCNFI 60
           MASSS+ SLFSSPHFTSFNRS HSK PLLSFS SSVSLN  PLHSS SSSSSS NRC+FI
Sbjct: 1   MASSSSNSLFSSPHFTSFNRSFHSKPPLLSFSTSSVSLNPRPLHSSSSSSSSSSNRCSFI 60

Query: 61  PLRSVLKTVESSELEVKNSDLVDPTFPNDRSTILVAEKLGEAGLKLLRSFGNVECAYDLS 120
           PLRSVLKT+ESS    +NSDL+DPT PNDRSTILVAEKLGEAGL+LLRSFGNV CAYDLS
Sbjct: 61  PLRSVLKTLESSAFVSQNSDLLDPTSPNDRSTILVAEKLGEAGLELLRSFGNVVCAYDLS 120

Query: 121 PEDLCAKISSCDALIVRSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVV 180
           PE+LCAKISSCDALIVRSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVV
Sbjct: 121 PEELCAKISSCDALIVRSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVV 180

Query: 181 NAPTANTIAAAEHGIALLTAMARNVAQADASMKAGR 216
           NAPTANTIAAAEHGIALLT+MARNVAQADASMKAG+
Sbjct: 181 NAPTANTIAAAEHGIALLTSMARNVAQADASMKAGK 216

BLAST of Lsi07G006290 vs. TrEMBL
Match: M5XBE0_PRUPE (D-3-phosphoglycerate dehydrogenase OS=Prunus persica GN=PRUPE_ppa002769mg PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.9e-61
Identity = 146/221 (66.06%), Postives = 174/221 (78.73%), Query Frame = 1

Query: 1   MASSSAKSLFSSPHFT-----SFNRSSHSKSPLLSFSKSSVSLNLH-PLHSSYSSSSSSN 60
           MASSS K++ ++  FT     S    S SK  LLSF  +S S  +   L  S+S + +S+
Sbjct: 1   MASSSIKAISTTSPFTASSSPSSQPPSSSKPSLLSFLHTSSSNPISLKLSHSHSHAHNSH 60

Query: 61  RCNFIPLRSVLKTVESSELEVKNSDLVDPTFPNDRSTILVAEKLGEAGLKLLRSFGNVEC 120
             +F+ + +VLKT +S E  V NS  + PT  +   TILV+EKLGEAGL++LR FGN+EC
Sbjct: 61  SHSFL-ITNVLKTADSFETSVSNSQNLKPTSSDSTPTILVSEKLGEAGLQVLRGFGNLEC 120

Query: 121 AYDLSPEDLCAKISSCDALIVRSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEF 180
           AY+LSPE+LCAKIS+CDALIVRSGTKV RQVFEAAKGRLKVVGRAGVGIDNVDLQAATEF
Sbjct: 121 AYNLSPEELCAKISTCDALIVRSGTKVTRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEF 180

Query: 181 GCLVVNAPTANTIAAAEHGIALLTAMARNVAQADASMKAGR 216
           GCLVVNAPTANT+AAAEHGIALLTAM+RNVAQADAS+KAG+
Sbjct: 181 GCLVVNAPTANTVAAAEHGIALLTAMSRNVAQADASIKAGK 220

BLAST of Lsi07G006290 vs. TrEMBL
Match: A0A022Q288_ERYGU (D-3-phosphoglycerate dehydrogenase OS=Erythranthe guttata GN=MIMGU_mgv1a002844mg PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 5.2e-59
Identity = 139/215 (64.65%), Postives = 163/215 (75.81%), Query Frame = 1

Query: 1   MASSSAKSLFSSPHFTSFNRSSHSKSPLLSFSKSSVSLNLHPLHSSYSSSSSSNRCNFIP 60
           ++S++ K    +P F    ++SHS    LSFS SS+SL      +++++ +S +      
Sbjct: 6   ISSAANKLTNQTPSFQPQEKNSHSSPTCLSFSNSSISLQKLSFSTNFTNPNSRSSTAI-- 65

Query: 61  LRSVLKTVESSELEVKNSDLVDPTFPNDRSTILVAEKLGEAGLKLLRSFGNVECAYDLSP 120
             +VLKT E+SE   +  D  +P   + + TILV+EKLGEAGL LLRSFGNVEC Y LS 
Sbjct: 66  --NVLKTAEASESVSRTRD-PEPVGKSTKPTILVSEKLGEAGLDLLRSFGNVECLYSLSQ 125

Query: 121 EDLCAKISSCDALIVRSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVVN 180
           EDLCAKIS CDALIVRSGTKV RQVFEAAKG+LKVVGRAGVGIDNVDLQAATEFGCLVVN
Sbjct: 126 EDLCAKISECDALIVRSGTKVTRQVFEAAKGKLKVVGRAGVGIDNVDLQAATEFGCLVVN 185

Query: 181 APTANTIAAAEHGIALLTAMARNVAQADASMKAGR 216
           APTANTIAAAEHGIALL  MARNVAQADASMKAG+
Sbjct: 186 APTANTIAAAEHGIALLAGMARNVAQADASMKAGK 215

BLAST of Lsi07G006290 vs. TrEMBL
Match: B9HK69_POPTR (D-3-phosphoglycerate dehydrogenase OS=Populus trichocarpa GN=POPTR_0008s01000g PE=3 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 8.8e-59
Identity = 144/223 (64.57%), Postives = 173/223 (77.58%), Query Frame = 1

Query: 1   MASSSAKSLFSSPHFTSFNRSSH--SKSPLLSFSKSS----VSLNL-HPLHSSYSSSSSS 60
           MASSS K + + P  T+ + SS   ++S LLSF +++    +SL L H  +S  +S SSS
Sbjct: 1   MASSSTKPISTPPFTTTISSSSQPSTRSSLLSFLRNTTPTPISLKLSHSRNSFLNSHSSS 60

Query: 61  NRCNFIPLRSVLKTVESSELE-VKNSDLVDPTFPNDRSTILVAEKLGEAGLKLLRSFGNV 120
           +R   + +++  KT+ES+E   V      D      + TILV+EKLGEAGL+LLRSFG+V
Sbjct: 61  SRS--LSIKNATKTIESAETSRVSKVGGQDADSQETKPTILVSEKLGEAGLELLRSFGDV 120

Query: 121 ECAYDLSPEDLCAKISSCDALIVRSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAAT 180
           +C+YDLS EDLC KI+SCDALIVRSGTKV RQVFEAAKG+LKVVGRAGVGIDNVDLQAAT
Sbjct: 121 DCSYDLSQEDLCKKIASCDALIVRSGTKVTRQVFEAAKGKLKVVGRAGVGIDNVDLQAAT 180

Query: 181 EFGCLVVNAPTANTIAAAEHGIALLTAMARNVAQADASMKAGR 216
           EFGCLVVNAPTANT+AAAEHGIALL AMARNVAQADASMKAG+
Sbjct: 181 EFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASMKAGQ 221

BLAST of Lsi07G006290 vs. TrEMBL
Match: G7JVK0_MEDTR (D-3-phosphoglycerate dehydrogenase OS=Medicago truncatula GN=MTR_4g005880 PE=3 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.5e-58
Identity = 140/218 (64.22%), Postives = 169/218 (77.52%), Query Frame = 1

Query: 2   ASSSAKSLFSSPHFTSFNRSSH----SKSPLLSFSKSSVSLNLHPLHSSYSSSSSSNRCN 61
           +SS  KS+  SP F+S + +S     SKS  LSF  S+ +  + P +   S ++S  RC 
Sbjct: 3   SSSCTKSILPSPIFSSSSSTSSETKSSKSSNLSFLNSN-TFGIIPNNIKLSHANSQQRCF 62

Query: 62  FIPLRSVLKTVESSELEVKNSDLVDPTFPNDRSTILVAEKLGEAGLKLLRSFGNVECAYD 121
            +   SVLKTV+ ++   + +++V     N++ TILV+EKLGEAGL++LR  GNVECAYD
Sbjct: 63  MV--NSVLKTVDQTK---QTNNVVSVNDENEKPTILVSEKLGEAGLQVLRQLGNVECAYD 122

Query: 122 LSPEDLCAKISSCDALIVRSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCL 181
           LSPEDLC KISSCDALIVRSGTKV R+VFEA KG+LKVVGRAGVGIDNVDLQAATEFGCL
Sbjct: 123 LSPEDLCKKISSCDALIVRSGTKVTRKVFEAGKGKLKVVGRAGVGIDNVDLQAATEFGCL 182

Query: 182 VVNAPTANTIAAAEHGIALLTAMARNVAQADASMKAGR 216
           VVNAPTANTIAAAEHGIALL AMARNV+QADAS+KAG+
Sbjct: 183 VVNAPTANTIAAAEHGIALLAAMARNVSQADASLKAGK 214

BLAST of Lsi07G006290 vs. TAIR10
Match: AT1G17745.2 (AT1G17745.2 D-3-phosphoglycerate dehydrogenase)

HSP 1 Score: 210.7 bits (535), Expect = 9.0e-55
Identity = 120/180 (66.67%), Postives = 136/180 (75.56%), Query Frame = 1

Query: 43  LHSSYSSSSSSNRCNFIPLRSVLKTVESSELEVKN--------SDLVDPTFPNDRSTILV 102
           LH  Y++S          + + LKTVE + L   N        SD  +PT P  R  ILV
Sbjct: 35  LHRRYATS-----VKLTAISAALKTVEQTTLTEDNRFSTVGSDSDEYNPTLPKPR--ILV 94

Query: 103 AEKLGEAGLKLLRSFGNVECAYDLSPEDLCAKISSCDALIVRSGTKVNRQVFEAAKGRLK 162
            EKLGEAG+ LLR FG+V+C+YDLSPEDL  K++  DALIVRSGTKV R+VFEAAKGRLK
Sbjct: 95  TEKLGEAGVNLLREFGDVDCSYDLSPEDLKKKVAESDALIVRSGTKVTREVFEAAKGRLK 154

Query: 163 VVGRAGVGIDNVDLQAATEFGCLVVNAPTANTIAAAEHGIALLTAMARNVAQADASMKAG 215
           VVGRAGVGIDNVDLQAATE GCLVVNAPTANT+AAAEHGIALL +MARNVAQADAS+KAG
Sbjct: 155 VVGRAGVGIDNVDLQAATEHGCLVVNAPTANTVAAAEHGIALLASMARNVAQADASIKAG 207

BLAST of Lsi07G006290 vs. TAIR10
Match: AT3G19480.1 (AT3G19480.1 D-3-phosphoglycerate dehydrogenase)

HSP 1 Score: 197.2 bits (500), Expect = 1.0e-50
Identity = 114/185 (61.62%), Postives = 136/185 (73.51%), Query Frame = 1

Query: 35  SVSLNLHPLHSSYSSSSSSNRCNFIPLRS----VLKTVESSELEVKNSDLVDPTFPNDRS 94
           + SLNL  + SS SS   +   +  P+R     +L T  SS                 + 
Sbjct: 2   ATSLNLSSIFSS-SSRLVTTPSSVFPIRQRRRIILVTSSSSG-------------GGGKP 61

Query: 95  TILVAEKLGEAGLKLLRSFGNVECAYDLSPEDLCAKISSCDALIVRSGTKVNRQVFEAAK 154
           TILV EKLG+AG+ LL+ + NV+C+YDLS E+LC KIS CDALIVRSGTKV R VFE+++
Sbjct: 62  TILVTEKLGQAGIDLLKKYANVDCSYDLSLEELCTKISLCDALIVRSGTKVGRDVFESSR 121

Query: 155 GRLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTIAAAEHGIALLTAMARNVAQADAS 214
           GRLKVVGRAGVGIDNVDL AATE+GCLVVNAPTANT+AAAEHGIALLTAMARN+AQADAS
Sbjct: 122 GRLKVVGRAGVGIDNVDLAAATEYGCLVVNAPTANTVAAAEHGIALLTAMARNIAQADAS 172

Query: 215 MKAGR 216
           +KAG+
Sbjct: 182 IKAGK 172

BLAST of Lsi07G006290 vs. TAIR10
Match: AT4G34200.1 (AT4G34200.1 D-3-phosphoglycerate dehydrogenase)

HSP 1 Score: 193.7 bits (491), Expect = 1.1e-49
Identity = 109/173 (63.01%), Postives = 129/173 (74.57%), Query Frame = 1

Query: 42  PLHSSYSSSSSSNRCNFIPLRSVLKTVESSELEVKNSDLVDPTFPNDRSTILVAEKLGEA 101
           PL S+ S +  S   N +  R VL +  + +                + TILVAEKLG+A
Sbjct: 28  PLPSAISVAFPSRGRNTLQRRLVLVSCSTGD--------------GSKPTILVAEKLGDA 87

Query: 102 GLKLLRSFGNVECAYDLSPEDLCAKISSCDALIVRSGTKVNRQVFEAAKGRLKVVGRAGV 161
           G+KLL    NV+C+Y+++PE+L  KIS CDALIVRSGTKV R+VFE++ GRLKVVGRAGV
Sbjct: 88  GIKLLEDVANVDCSYNMTPEELNIKISLCDALIVRSGTKVGREVFESSHGRLKVVGRAGV 147

Query: 162 GIDNVDLQAATEFGCLVVNAPTANTIAAAEHGIALLTAMARNVAQADASMKAG 215
           GIDNVDL AATEFGCLVVNAPTANTIAAAEHGIAL+ AMARNVAQADAS+KAG
Sbjct: 148 GIDNVDLSAATEFGCLVVNAPTANTIAAAEHGIALMAAMARNVAQADASVKAG 186

BLAST of Lsi07G006290 vs. NCBI nr
Match: gi|659127975|ref|XP_008463985.1| (PREDICTED: D-3-phosphoglycerate dehydrogenase, chloroplastic-like [Cucumis melo])

HSP 1 Score: 357.1 bits (915), Expect = 2.2e-95
Identity = 197/216 (91.20%), Postives = 205/216 (94.91%), Query Frame = 1

Query: 1   MASSSAKSLFSSPHFTSFNRSSHSKSPLLSFSKSSVSLNLHPLHSSY-SSSSSSNRCNFI 60
           MASSS+KSLFSSPHFTSFNRSSHSKSPLLSFS SSVSLN  PLHSS  SSSSSSNRC+FI
Sbjct: 1   MASSSSKSLFSSPHFTSFNRSSHSKSPLLSFSTSSVSLNPRPLHSSITSSSSSSNRCSFI 60

Query: 61  PLRSVLKTVESSELEVKNSDLVDPTFPNDRSTILVAEKLGEAGLKLLRSFGNVECAYDLS 120
           PLRSVLKT+ESS    +NSDLVDPT PNDRSTILVAEKLGEAGL+LLRSFGNV CAYDLS
Sbjct: 61  PLRSVLKTLESSAFVSQNSDLVDPTSPNDRSTILVAEKLGEAGLELLRSFGNVVCAYDLS 120

Query: 121 PEDLCAKISSCDALIVRSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVV 180
           PE+LCAKISSCDALIVRSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVV
Sbjct: 121 PEELCAKISSCDALIVRSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVV 180

Query: 181 NAPTANTIAAAEHGIALLTAMARNVAQADASMKAGR 216
           NAPTANTIAAAEHGIALLTAMARNVAQADAS+KAG+
Sbjct: 181 NAPTANTIAAAEHGIALLTAMARNVAQADASIKAGK 216

BLAST of Lsi07G006290 vs. NCBI nr
Match: gi|778682562|ref|XP_004148563.2| (PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic [Cucumis sativus])

HSP 1 Score: 349.7 bits (896), Expect = 3.5e-93
Identity = 193/216 (89.35%), Postives = 202/216 (93.52%), Query Frame = 1

Query: 1   MASSSAKSLFSSPHFTSFNRSSHSKSPLLSFSKSSVSLNLHPLHSSYSSSSSS-NRCNFI 60
           MASSS+ SLFSSPHFTSFNRS HSK PLLSFS SSVSLN  PLHSS SSSSSS NRC+FI
Sbjct: 1   MASSSSNSLFSSPHFTSFNRSFHSKPPLLSFSTSSVSLNPRPLHSSSSSSSSSSNRCSFI 60

Query: 61  PLRSVLKTVESSELEVKNSDLVDPTFPNDRSTILVAEKLGEAGLKLLRSFGNVECAYDLS 120
           PLRSVLKT+ESS    +NSDL+DPT PNDRSTILVAEKLGEAGL+LLRSFGNV CAYDLS
Sbjct: 61  PLRSVLKTLESSAFVSQNSDLLDPTSPNDRSTILVAEKLGEAGLELLRSFGNVVCAYDLS 120

Query: 121 PEDLCAKISSCDALIVRSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVV 180
           PE+LCAKISSCDALIVRSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVV
Sbjct: 121 PEELCAKISSCDALIVRSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVV 180

Query: 181 NAPTANTIAAAEHGIALLTAMARNVAQADASMKAGR 216
           NAPTANTIAAAEHGIALLT+MARNVAQADASMKAG+
Sbjct: 181 NAPTANTIAAAEHGIALLTSMARNVAQADASMKAGK 216

BLAST of Lsi07G006290 vs. NCBI nr
Match: gi|1009163039|ref|XP_015899751.1| (PREDICTED: D-3-phosphoglycerate dehydrogenase 2, chloroplastic-like [Ziziphus jujuba])

HSP 1 Score: 253.8 bits (647), Expect = 2.6e-64
Identity = 155/225 (68.89%), Postives = 173/225 (76.89%), Query Frame = 1

Query: 1   MASSSAKSLFSSPH----FTSFNRSSHSKSPLLSF------SKSSVSLNLHPLHSSYSSS 60
           MASSS KS+F+SP      +S + SS SKS  LSF      S S +SL L   HS    S
Sbjct: 1   MASSSTKSIFTSPFPSSSSSSKSSSSKSKSSKLSFLHNTSSSSSPISLKLSHFHSL---S 60

Query: 61  SSSNRCNFIPLRSVLKTVESSELEVKNSDLVDPTFPNDRSTILVAEKLGEAGLKLLRSFG 120
           +   RC    +   LKTVES  +  K+ DL D T    + TILV+EKLGEAGL++LR FG
Sbjct: 61  ARRRRCASFSVNGALKTVESPSVH-KSQDL-DSTSSRSKPTILVSEKLGEAGLEVLRGFG 120

Query: 121 NVECAYDLSPEDLCAKISSCDALIVRSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQA 180
           NVECAYDLSPE LC+KISSCDALIVRSGTKVNRQVFEAAKG+LKVVGRAGVGIDNVDLQA
Sbjct: 121 NVECAYDLSPEQLCSKISSCDALIVRSGTKVNRQVFEAAKGKLKVVGRAGVGIDNVDLQA 180

Query: 181 ATEFGCLVVNAPTANTIAAAEHGIALLTAMARNVAQADASMKAGR 216
           ATEFGCLVVNAPTANT+AAAEHGIALLTAMARNVAQADAS+KAG+
Sbjct: 181 ATEFGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASIKAGK 220

BLAST of Lsi07G006290 vs. NCBI nr
Match: gi|595972256|ref|XP_007217629.1| (hypothetical protein PRUPE_ppa002769mg [Prunus persica])

HSP 1 Score: 243.8 bits (621), Expect = 2.7e-61
Identity = 146/221 (66.06%), Postives = 174/221 (78.73%), Query Frame = 1

Query: 1   MASSSAKSLFSSPHFT-----SFNRSSHSKSPLLSFSKSSVSLNLH-PLHSSYSSSSSSN 60
           MASSS K++ ++  FT     S    S SK  LLSF  +S S  +   L  S+S + +S+
Sbjct: 1   MASSSIKAISTTSPFTASSSPSSQPPSSSKPSLLSFLHTSSSNPISLKLSHSHSHAHNSH 60

Query: 61  RCNFIPLRSVLKTVESSELEVKNSDLVDPTFPNDRSTILVAEKLGEAGLKLLRSFGNVEC 120
             +F+ + +VLKT +S E  V NS  + PT  +   TILV+EKLGEAGL++LR FGN+EC
Sbjct: 61  SHSFL-ITNVLKTADSFETSVSNSQNLKPTSSDSTPTILVSEKLGEAGLQVLRGFGNLEC 120

Query: 121 AYDLSPEDLCAKISSCDALIVRSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEF 180
           AY+LSPE+LCAKIS+CDALIVRSGTKV RQVFEAAKGRLKVVGRAGVGIDNVDLQAATEF
Sbjct: 121 AYNLSPEELCAKISTCDALIVRSGTKVTRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEF 180

Query: 181 GCLVVNAPTANTIAAAEHGIALLTAMARNVAQADASMKAGR 216
           GCLVVNAPTANT+AAAEHGIALLTAM+RNVAQADAS+KAG+
Sbjct: 181 GCLVVNAPTANTVAAAEHGIALLTAMSRNVAQADASIKAGK 220

BLAST of Lsi07G006290 vs. NCBI nr
Match: gi|645246466|ref|XP_008229368.1| (PREDICTED: D-3-phosphoglycerate dehydrogenase, chloroplastic [Prunus mume])

HSP 1 Score: 241.1 bits (614), Expect = 1.8e-60
Identity = 145/218 (66.51%), Postives = 172/218 (78.90%), Query Frame = 1

Query: 1   MASSSAKSL--FSSPHFTSFNRSSHSKSPLLSFSKSSVSLNLH-PLHSSYSSSSSSNRCN 60
           MASSS K++  F +    S    S SK  LLSF  +S S  +   L  S+S + +S+  +
Sbjct: 1   MASSSIKAISPFKASSSPSTQPPSSSKPSLLSFLHTSSSNPISLKLSHSHSHAHNSHSHS 60

Query: 61  FIPLRSVLKTVESSELEVKNSDLVDPTFPNDRSTILVAEKLGEAGLKLLRSFGNVECAYD 120
           F+ + +VLKT +SSE  V  S  + PT  +   TILV+EKLGEAGL++LR FGN+ECAY+
Sbjct: 61  FL-ITNVLKTADSSETSVSKSQNLKPTSSDLTPTILVSEKLGEAGLQVLRGFGNLECAYN 120

Query: 121 LSPEDLCAKISSCDALIVRSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCL 180
           LSPE+LCAKIS+CDALIVRSGTKV RQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCL
Sbjct: 121 LSPEELCAKISTCDALIVRSGTKVTRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCL 180

Query: 181 VVNAPTANTIAAAEHGIALLTAMARNVAQADASMKAGR 216
           VVNAPTANT+AAAEHGIALLTAM+RNVAQADAS+KAG+
Sbjct: 181 VVNAPTANTVAAAEHGIALLTAMSRNVAQADASIKAGK 217

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
SERA2_ARATH9.4e-5466.30D-3-phosphoglycerate dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana GN=P... [more]
SERA3_ARATH1.8e-4961.62D-3-phosphoglycerate dehydrogenase 3, chloroplastic OS=Arabidopsis thaliana GN=P... [more]
SERA1_ARATH2.0e-4863.01D-3-phosphoglycerate dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=P... [more]
SERA_METJA1.7e-2653.66D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii (strain ATCC... [more]
SERA_METTH3.5e-2446.46D-3-phosphoglycerate dehydrogenase OS=Methanothermobacter thermautotrophicus (st... [more]
Match NameE-valueIdentityDescription
A0A0A0LC35_CUCSA2.5e-9389.35D-3-phosphoglycerate dehydrogenase OS=Cucumis sativus GN=Csa_3G651740 PE=3 SV=1[more]
M5XBE0_PRUPE1.9e-6166.06D-3-phosphoglycerate dehydrogenase OS=Prunus persica GN=PRUPE_ppa002769mg PE=3 S... [more]
A0A022Q288_ERYGU5.2e-5964.65D-3-phosphoglycerate dehydrogenase OS=Erythranthe guttata GN=MIMGU_mgv1a002844mg... [more]
B9HK69_POPTR8.8e-5964.57D-3-phosphoglycerate dehydrogenase OS=Populus trichocarpa GN=POPTR_0008s01000g P... [more]
G7JVK0_MEDTR1.5e-5864.22D-3-phosphoglycerate dehydrogenase OS=Medicago truncatula GN=MTR_4g005880 PE=3 S... [more]
Match NameE-valueIdentityDescription
AT1G17745.29.0e-5566.67 D-3-phosphoglycerate dehydrogenase[more]
AT3G19480.11.0e-5061.62 D-3-phosphoglycerate dehydrogenase[more]
AT4G34200.11.1e-4963.01 D-3-phosphoglycerate dehydrogenase[more]
Match NameE-valueIdentityDescription
gi|659127975|ref|XP_008463985.1|2.2e-9591.20PREDICTED: D-3-phosphoglycerate dehydrogenase, chloroplastic-like [Cucumis melo][more]
gi|778682562|ref|XP_004148563.2|3.5e-9389.35PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic [Cucumis sativus][more]
gi|1009163039|ref|XP_015899751.1|2.6e-6468.89PREDICTED: D-3-phosphoglycerate dehydrogenase 2, chloroplastic-like [Ziziphus ju... [more]
gi|595972256|ref|XP_007217629.1|2.7e-6166.06hypothetical protein PRUPE_ppa002769mg [Prunus persica][more]
gi|645246466|ref|XP_008229368.1|1.8e-6066.51PREDICTED: D-3-phosphoglycerate dehydrogenase, chloroplastic [Prunus mume][more]
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0051287NAD binding
GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
Vocabulary: INTERPRO
TermDefinition
IPR016040NAD(P)-bd_dom
IPR006139D-isomer_2_OHA_DH_cat_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006544 glycine metabolic process
biological_process GO:0006564 L-serine biosynthetic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006566 threonine metabolic process
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016597 amino acid binding
molecular_function GO:0051287 NAD binding
molecular_function GO:0004617 phosphoglycerate dehydrogenase activity
molecular_function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi07G006290.1Lsi07G006290.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006139D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domainPFAMPF003892-Hacid_dhcoord: 92..206
score: 3.6
IPR016040NAD(P)-binding domainGENE3DG3DSA:3.40.50.720coord: 91..215
score: 3.9
NoneNo IPR availablePANTHERPTHR109962-HYDROXYACID DEHYDROGENASE-RELATEDcoord: 79..215
score: 2.4
NoneNo IPR availablePANTHERPTHR10996:SF159D-3-PHOSPHOGLYCERATE DEHYDROGENASEcoord: 79..215
score: 2.4
NoneNo IPR availableunknownSSF52283Formate/glycerate dehydrogenase catalytic domain-likecoord: 91..214
score: 3.02

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi07G006290CmoCh01G000270Cucurbita moschata (Rifu)cmolsiB437
Lsi07G006290CsaV3_UNG227820Cucumber (Chinese Long) v3cuclsiB097
The following gene(s) are paralogous to this gene:

None