CsaV3_2G012150 (gene) Cucumber (Chinese Long) v3

NameCsaV3_2G012150
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Locationchr2 : 9637441 .. 9638680 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTATTCCCAAAGGGTTTTCAAAAATATCACTCACTAAGTCTTTTGACTTATTATTTAAGTTTTTCCTTTCCACGTTGTAAGAAGCTAAGCGATCAGGTTGAAAGGTAAGTTAACGATGCTAAGCAATCGTGTTAAAAGGTAAGAGATCGTTAAAGGCAAAAGACTACGAAGGCTTTCAACATTTCTTTGTTAAGCTCTTGTTTTGGGAATTTGTATCTTGTTTTGTACTGTTTACTGAGGTATTTTATGTTGTGTGGTATTTATTTAAGTTTAAGTTAAGATGTGTCAAACGATTGATGCAGGGCGTGACAATTTGGTATCAGAGTATTACGTTCGTTGGGAGCTAAGTATATATTTAAGTTCTTTTTTAGAAAGGAATATAGAAAATATGCGACCAAGAAGAGGAAGGGAGCAGGAATAGATCAAGGTTGAAAATGGAACCTACCATAGATTCAGAGGCTCATGCATTAAATCCAAACGCAAGGAGAGAAGAAGAAGAAGCGTTGTATGATAGATTTGCGCAAAGATTAATTAACGCCTTGGCACAACAACTGAAGAAAAACTTTGGTATAGAAAGGGTTAAGGCATTAGGTGCTACGGAATTCAATGGGATAGAGAATCATGAGGAAGCAGAGAAATGGATCCGAACACTGGAGAAGTGTTTTCGAGTAATGCAATGCCCAAAGGAAAGAAGAGTTAATTTGGCGGTGTTCCTACTTCTGGAAAGGGCAGAAGATTGGTGGATACTTGAAGAAAATAGGAGAGGAATAGTTAGCTAAAAAGAGTTCAGAGAAATATTTAATAGTAAGTTTTTCTCTAAGACTTGCAGAGATGAAAGGCGAGATAAGTTCCTTCATTTGAAATAAGGGGAACTTTTGATTGCAGATTACGAAAAGAAGTTTACATAATTAATTAGGTATGTGATGGAAATACTCGATACTGAGAGAGAAGGATGCAAGTGATTTGAGAATAAATTAAGAGGGTTGGATTCTAATGTCCTCTGTTCACATGTTCTTATACTCCACCTTGATGACTTTAGAGATGGGCTCAAATCCTTCATCTGCAACTTCTTAAGCATCAAAATATGAAATCGGTGACTTTTAATTTTTTGTATATTTATTTTCCCAAAACATTTACCGCGGATTCTTCATTGACTTAATTTTTTTTAAGATCACCATTGTTGTTAGCAAATAAATTGGTTATATTTCATGTATGCAAATTAGGGTTGATGAGTTTAAAA

mRNA sequence

ATGGAACCTACCATAGATTCAGAGGCTCATGCATTAAATCCAAACGCAAGGAGAGAAGAAGAAGAAGCGTTGTATGATAGATTTGCGCAAAGATTAATTAACGCCTTGGCACAACAACTGAAGAAAAACTTTGGTATAGAAAGGGTTAAGGCATTAGGTGCTACGGAATTCAATGGGATAGAGAATCATGAGGAAGCAGAGAAATGGATCCGAACACTGGAGAAGTGTTTTCGAGTAATGCAATGCCCAAAGGAAAGAAGAGTTAATTTGGCGGTGTTCCTACTTCTGGAAAGGGCAGAAGATTGGTGGATACTTGAAGAAAATAGGAGAGGAATAGTTAGCTAA

Coding sequence (CDS)

ATGGAACCTACCATAGATTCAGAGGCTCATGCATTAAATCCAAACGCAAGGAGAGAAGAAGAAGAAGCGTTGTATGATAGATTTGCGCAAAGATTAATTAACGCCTTGGCACAACAACTGAAGAAAAACTTTGGTATAGAAAGGGTTAAGGCATTAGGTGCTACGGAATTCAATGGGATAGAGAATCATGAGGAAGCAGAGAAATGGATCCGAACACTGGAGAAGTGTTTTCGAGTAATGCAATGCCCAAAGGAAAGAAGAGTTAATTTGGCGGTGTTCCTACTTCTGGAAAGGGCAGAAGATTGGTGGATACTTGAAGAAAATAGGAGAGGAATAGTTAGCTAA

Protein sequence

MEPTIDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGIENHEEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDWWILEENRRGIVS
BLAST of CsaV3_2G012150 vs. NCBI nr
Match: KGN61535.1 (hypothetical protein Csa_2G163160 [Cucumis sativus])

HSP 1 Score: 232.3 bits (591), Expect = 8.5e-58
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0

Query: 1   MEPTIDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGI 60
           MEPTIDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGI
Sbjct: 1   MEPTIDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGI 60

Query: 61  ENHEEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDWWILEENRRGIVS 115
           ENHEEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDWWILEENRRGIVS
Sbjct: 61  ENHEEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDWWILEENRRGIVS 114

BLAST of CsaV3_2G012150 vs. NCBI nr
Match: KGN58005.1 (hypothetical protein Csa_3G426910 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 4.3e-17
Identity = 46/74 (62.16%), Postives = 59/74 (79.73%), Query Frame = 0

Query: 5  IDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGIENHE 64
          ++SEAH++N NA +E++E +YDR  QRL++ +A Q +K FGIER+KALGATEF G    E
Sbjct: 1  MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPE 60

Query: 65 EAEKWIRTLEKCFR 79
          E EKWIRTLEKCFR
Sbjct: 61 EFEKWIRTLEKCFR 74

BLAST of CsaV3_2G012150 vs. NCBI nr
Match: XP_008456815.1 (PREDICTED: uncharacterized protein LOC103496653 [Cucumis melo])

HSP 1 Score: 78.2 bits (191), Expect = 2.1e-11
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 0

Query: 44  FGIERVKALGATEFNGIENHEEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDWW 103
           +GIER+K LGAT F G  +  +A+ W+  LEKCF VM CP+ER+V LA FLL + AE WW
Sbjct: 2   YGIERLKKLGATVFEGSTDLADADAWLNMLEKCFDVMSCPQERKVRLATFLLQKEAEGWW 61

BLAST of CsaV3_2G012150 vs. NCBI nr
Match: XP_016899851.1 (PREDICTED: uncharacterized protein LOC103487680 [Cucumis melo])

HSP 1 Score: 76.6 bits (187), Expect = 6.0e-11
Identity = 42/99 (42.42%), Postives = 56/99 (56.57%), Query Frame = 0

Query: 7   SEAHALNPNARREEEEALYDRFAQRLI---NALAQQLKKNFGIERVKALGATEFNGIENH 66
           SE  +  P  + E     + R AQ +     A    L K +GIE++K LGAT F G  + 
Sbjct: 24  SERGSSTPRGQNEVGSERFARSAQEISRPERARPSDLDKMYGIEQLKKLGATVFQGSTDP 83

Query: 67  EEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDW 103
            +AE W+  LEKCF VM CP+E++V LA FLL + AE W
Sbjct: 84  ADAEVWLNMLEKCFDVMSCPQEQKVRLATFLLQKEAEGW 122

BLAST of CsaV3_2G012150 vs. NCBI nr
Match: KGN64939.1 (hypothetical protein Csa_1G165220 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 7.8e-11
Identity = 44/93 (47.31%), Postives = 58/93 (62.37%), Query Frame = 0

Query: 20  EEEALYDRFAQRLINALAQQL-----------KKNFGIERVKALGATEFNGIENHEEAEK 79
           EEE + D+ A +     AQQL           KK +GIE+VKA G  EF+     E+A K
Sbjct: 27  EEEDMDDQGASQ-----AQQLSPLWTQRPSHRKKKYGIEQVKAFGDKEFSRTVELEQANK 86

Query: 80  WIRTLEKCFRVMQCPKERRVNLAVFLLLERAED 102
           W+R LEKCFRV+QC +ER+++LA FLL  +AED
Sbjct: 87  WLRALEKCFRVLQCLEERKIDLAAFLLHRKAED 114

BLAST of CsaV3_2G012150 vs. TrEMBL
Match: tr|A0A0A0LI31|A0A0A0LI31_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G163160 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 5.6e-58
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0

Query: 1   MEPTIDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGI 60
           MEPTIDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGI
Sbjct: 1   MEPTIDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGI 60

Query: 61  ENHEEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDWWILEENRRGIVS 115
           ENHEEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDWWILEENRRGIVS
Sbjct: 61  ENHEEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDWWILEENRRGIVS 114

BLAST of CsaV3_2G012150 vs. TrEMBL
Match: tr|A0A0A0L7X2|A0A0A0L7X2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G426910 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.8e-17
Identity = 46/74 (62.16%), Postives = 59/74 (79.73%), Query Frame = 0

Query: 5  IDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGIENHE 64
          ++SEAH++N NA +E++E +YDR  QRL++ +A Q +K FGIER+KALGATEF G    E
Sbjct: 1  MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPE 60

Query: 65 EAEKWIRTLEKCFR 79
          E EKWIRTLEKCFR
Sbjct: 61 EFEKWIRTLEKCFR 74

BLAST of CsaV3_2G012150 vs. TrEMBL
Match: tr|A0A1S3C3Q7|A0A1S3C3Q7_CUCME (uncharacterized protein LOC103496653 OS=Cucumis melo OX=3656 GN=LOC103496653 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.4e-11
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 0

Query: 44  FGIERVKALGATEFNGIENHEEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDWW 103
           +GIER+K LGAT F G  +  +A+ W+  LEKCF VM CP+ER+V LA FLL + AE WW
Sbjct: 2   YGIERLKKLGATVFEGSTDLADADAWLNMLEKCFDVMSCPQERKVRLATFLLQKEAEGWW 61

BLAST of CsaV3_2G012150 vs. TrEMBL
Match: tr|A0A1S4DV40|A0A1S4DV40_CUCME (uncharacterized protein LOC103487680 OS=Cucumis melo OX=3656 GN=LOC103487680 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 4.0e-11
Identity = 42/99 (42.42%), Postives = 56/99 (56.57%), Query Frame = 0

Query: 7   SEAHALNPNARREEEEALYDRFAQRLI---NALAQQLKKNFGIERVKALGATEFNGIENH 66
           SE  +  P  + E     + R AQ +     A    L K +GIE++K LGAT F G  + 
Sbjct: 24  SERGSSTPRGQNEVGSERFARSAQEISRPERARPSDLDKMYGIEQLKKLGATVFQGSTDP 83

Query: 67  EEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDW 103
            +AE W+  LEKCF VM CP+E++V LA FLL + AE W
Sbjct: 84  ADAEVWLNMLEKCFDVMSCPQEQKVRLATFLLQKEAEGW 122

BLAST of CsaV3_2G012150 vs. TrEMBL
Match: tr|A0A1S4E079|A0A1S4E079_CUCME (uncharacterized protein LOC107991239 OS=Cucumis melo OX=3656 GN=LOC107991239 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.2e-11
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 0

Query: 44  FGIERVKALGATEFNGIENHEEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDWW 103
           +GIER+K L AT F G  +  +AE W+  LEKCF VM CP+ER+V LA FLL + AE WW
Sbjct: 2   YGIERLKKLRATVFEGSTDPADAEVWLNMLEKCFDVMSCPQERKVRLATFLLQKEAEGWW 61

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN61535.18.5e-58100.00hypothetical protein Csa_2G163160 [Cucumis sativus][more]
KGN58005.14.3e-1762.16hypothetical protein Csa_3G426910 [Cucumis sativus][more]
XP_008456815.12.1e-1156.67PREDICTED: uncharacterized protein LOC103496653 [Cucumis melo][more]
XP_016899851.16.0e-1142.42PREDICTED: uncharacterized protein LOC103487680 [Cucumis melo][more]
KGN64939.17.8e-1147.31hypothetical protein Csa_1G165220 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LI31|A0A0A0LI31_CUCSA5.6e-58100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G163160 PE=4 SV=1[more]
tr|A0A0A0L7X2|A0A0A0L7X2_CUCSA2.8e-1762.16Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G426910 PE=4 SV=1[more]
tr|A0A1S3C3Q7|A0A1S3C3Q7_CUCME1.4e-1156.67uncharacterized protein LOC103496653 OS=Cucumis melo OX=3656 GN=LOC103496653 PE=... [more]
tr|A0A1S4DV40|A0A1S4DV40_CUCME4.0e-1142.42uncharacterized protein LOC103487680 OS=Cucumis melo OX=3656 GN=LOC103487680 PE=... [more]
tr|A0A1S4E079|A0A1S4E079_CUCME5.2e-1156.67uncharacterized protein LOC107991239 OS=Cucumis melo OX=3656 GN=LOC107991239 PE=... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G012150.1CsaV3_2G012150.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_2G012150CSPI02G09690Wild cucumber (PI 183967)cpicucB080
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G012150Cucumber (Chinese Long) v3cuccucB077
CsaV3_2G012150Cucumber (Chinese Long) v3cuccucB067
CsaV3_2G012150Silver-seed gourdcarcucB0258
CsaV3_2G012150Silver-seed gourdcarcucB0265
CsaV3_2G012150Silver-seed gourdcarcucB1001
CsaV3_2G012150Silver-seed gourdcarcucB1123
CsaV3_2G012150Cucumber (Gy14) v2cgybcucB064
CsaV3_2G012150Cucumber (Gy14) v2cgybcucB109
CsaV3_2G012150Cucumber (Gy14) v2cgybcucB116
CsaV3_2G012150Cucumber (Gy14) v1cgycucB309
CsaV3_2G012150Cucumber (Gy14) v1cgycucB384
CsaV3_2G012150Cucurbita maxima (Rimu)cmacucB0277
CsaV3_2G012150Cucurbita maxima (Rimu)cmacucB0418
CsaV3_2G012150Cucurbita maxima (Rimu)cmacucB0698
CsaV3_2G012150Cucurbita maxima (Rimu)cmacucB0964
CsaV3_2G012150Cucurbita maxima (Rimu)cmacucB1043
CsaV3_2G012150Cucurbita moschata (Rifu)cmocucB0267
CsaV3_2G012150Cucurbita moschata (Rifu)cmocucB0413
CsaV3_2G012150Cucurbita moschata (Rifu)cmocucB0683
CsaV3_2G012150Cucurbita moschata (Rifu)cmocucB0952
CsaV3_2G012150Cucurbita moschata (Rifu)cmocucB1026
CsaV3_2G012150Cucurbita pepo (Zucchini)cpecucB0145
CsaV3_2G012150Cucurbita pepo (Zucchini)cpecucB0377
CsaV3_2G012150Cucurbita pepo (Zucchini)cpecucB0746
CsaV3_2G012150Cucurbita pepo (Zucchini)cpecucB0889
CsaV3_2G012150Cucurbita pepo (Zucchini)cpecucB1045
CsaV3_2G012150Wild cucumber (PI 183967)cpicucB134
CsaV3_2G012150Wild cucumber (PI 183967)cpicucB143
CsaV3_2G012150Bottle gourd (USVL1VR-Ls)cuclsiB098
CsaV3_2G012150Bottle gourd (USVL1VR-Ls)cuclsiB139
CsaV3_2G012150Melon (DHL92) v3.5.1cucmeB143
CsaV3_2G012150Melon (DHL92) v3.5.1cucmeB147
CsaV3_2G012150Melon (DHL92) v3.6.1cucmedB136
CsaV3_2G012150Melon (DHL92) v3.6.1cucmedB140
CsaV3_2G012150Watermelon (Charleston Gray)cucwcgB148
CsaV3_2G012150Watermelon (Charleston Gray)cucwcgB161
CsaV3_2G012150Watermelon (Charleston Gray)cucwcgB168
CsaV3_2G012150Watermelon (97103) v1cucwmB136
CsaV3_2G012150Watermelon (97103) v1cucwmB184
CsaV3_2G012150Watermelon (97103) v2cucwmbB155
CsaV3_2G012150Watermelon (97103) v2cucwmbB134
CsaV3_2G012150Watermelon (97103) v2cucwmbB148
CsaV3_2G012150Wax gourdcucwgoB129
CsaV3_2G012150Wax gourdcucwgoB134