CSPI02G09690 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI02G09690
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionTransposon Ty3-I Gag-Pol polyprotein
LocationChr2 : 9700959 .. 9701303 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACCTACCATAGATTCAGAGGCTCATGCATTAAATCCAAACGCAAGGAGAGAAGAAGAAGAAGCGTTGTATGATAGATTTGCGCAAAGATTAATTAACGCCTTGGCACAACAACTGAAGAAAAACTTTGGTATAGGAAGGCTTAAGGCATTAGGTGCTACAGAATTCAATGGGATAGAGAATCCTGAGGAAGCAGAGAAATGGATCCGAACACTGGAGAAGTGTTTTCGAGTAATGCAATGCCCAAAGGAAAGGAGAGTTAATTTGGCGGTGTTCCTACTTCTGGAAAGGGCAGAAGATTGGTGGATACTTGAAGAAAATAAGAGAGGAATAGTTAGCTAG

mRNA sequence

ATGGAACCTACCATAGATTCAGAGGCTCATGCATTAAATCCAAACGCAAGGAGAGAAGAAGAAGAAGCGTTGTATGATAGATTTGCGCAAAGATTAATTAACGCCTTGGCACAACAACTGAAGAAAAACTTTGGTATAGGAAGGCTTAAGGCATTAGGTGCTACAGAATTCAATGGGATAGAGAATCCTGAGGAAGCAGAGAAATGGATCCGAACACTGGAGAAGTGTTTTCGAGTAATGCAATGCCCAAAGGAAAGGAGAGTTAATTTGGCGGTGTTCCTACTTCTGGAAAGGGCAGAAGATTGGTGGATACTTGAAGAAAATAAGAGAGGAATAGTTAGCTAG

Coding sequence (CDS)

ATGGAACCTACCATAGATTCAGAGGCTCATGCATTAAATCCAAACGCAAGGAGAGAAGAAGAAGAAGCGTTGTATGATAGATTTGCGCAAAGATTAATTAACGCCTTGGCACAACAACTGAAGAAAAACTTTGGTATAGGAAGGCTTAAGGCATTAGGTGCTACAGAATTCAATGGGATAGAGAATCCTGAGGAAGCAGAGAAATGGATCCGAACACTGGAGAAGTGTTTTCGAGTAATGCAATGCCCAAAGGAAAGGAGAGTTAATTTGGCGGTGTTCCTACTTCTGGAAAGGGCAGAAGATTGGTGGATACTTGAAGAAAATAAGAGAGGAATAGTTAGCTAG
Homology
[Close]
BLAST of CSPI02G09690 vs. TrEMBL
Match: A0A0A0LI31_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G163160 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.1e-55
Identity = 110/114 (96.49%), Postives = 112/114 (98.25%), Query Frame = 1 

Query: 1   MEPTIDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIGRLKALGATEFNGI 60
           MEPTIDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGI R+KALGATEFNGI
Sbjct: 1   MEPTIDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGI 60

Query: 61  ENPEEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDWWILEENKRGIVS 115
           EN EEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDWWILEEN+RGIVS
Sbjct: 61  ENHEEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDWWILEENRRGIVS 114

[Close]
BLAST of CSPI02G09690 vs. TrEMBL
Match: A0A0A0L7X2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G426910 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.8e-18
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 1 

Query: 5  IDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIGRLKALGATEFNGIENPE 64
          ++SEAH++N NA +E++E +YDR  QRL++ +A Q +K FGI RLKALGATEF G   PE
Sbjct: 1  MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPE 60

Query: 65 EAEKWIRTLEKCFR 79
          E EKWIRTLEKCFR
Sbjct: 61 EFEKWIRTLEKCFR 74

[Close]
BLAST of CSPI02G09690 vs. TrEMBL
Match: A0A0A0LVF8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G165220 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.4e-10
Identity = 42/93 (45.16%), Postives = 57/93 (61.29%), Query Frame = 1 

Query: 20  EEEALYDRFAQRLINALAQQL-----------KKNFGIGRLKALGATEFNGIENPEEAEK 79
           EEE + D+ A +     AQQL           KK +GI ++KA G  EF+     E+A K
Sbjct: 27  EEEDMDDQGASQ-----AQQLSPLWTQRPSHRKKKYGIEQVKAFGDKEFSRTVELEQANK 86

Query: 80  WIRTLEKCFRVMQCPKERRVNLAVFLLLERAED 102
           W+R LEKCFRV+QC +ER+++LA FLL  +AED
Sbjct: 87  WLRALEKCFRVLQCLEERKIDLAAFLLHRKAED 114

[Close]
BLAST of CSPI02G09690 vs. TrEMBL
Match: A0A0A0KCZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G127310 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.8e-09
Identity = 35/69 (50.72%), Postives = 46/69 (66.67%), Query Frame = 1 

Query: 32  LINALAQQLKKNFGIGRLKALGATEFNGIENPEEAEKWIRTLEKCFRVMQCPKERRVNLA 91
           LI  L+++ +K FGI RLKAL A EF      E+AEKWIRTLEK FRV+QC +E +V   
Sbjct: 8   LIERLSREPEKKFGIERLKALAAQEFTEKIELEQAEKWIRTLEKSFRVVQCAEESKVEFT 67

Query: 92  VFLLLERAE 101
           V L  ++ +
Sbjct: 68  VLLQCKKEQ 76

[Close]
BLAST of CSPI02G09690 vs. TrEMBL
Match: M5VK25_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.2e-08
Identity = 31/58 (53.45%), Postives = 37/58 (63.79%), Query Frame = 1 

Query: 46  IGRLKALGATEFNGIENPEEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDWW 104
           I R+K LGA EF G  +P EAE WI  +E+ F V++CP E RV LA FLL   A  WW
Sbjct: 74  IKRVKELGAKEFVGSTDPAEAESWITDVERIFEVLECPAEDRVRLATFLLKGNAYHWW 131

[Close]
BLAST of CSPI02G09690 vs. NCBI nr
Match: gi|700206416|gb|KGN61535.1| (hypothetical protein Csa_2G163160 [Cucumis sativus])

HSP 1 Score: 223.8 bits (569), Expect = 1.6e-55
Identity = 110/114 (96.49%), Postives = 112/114 (98.25%), Query Frame = 1 

Query: 1   MEPTIDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIGRLKALGATEFNGI 60
           MEPTIDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGI R+KALGATEFNGI
Sbjct: 1   MEPTIDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGI 60

Query: 61  ENPEEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDWWILEENKRGIVS 115
           EN EEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDWWILEEN+RGIVS
Sbjct: 61  ENHEEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDWWILEENRRGIVS 114

[Close]
BLAST of CSPI02G09690 vs. NCBI nr
Match: gi|659072264|ref|XP_008464580.1| (PREDICTED: uncharacterized protein LOC103502419 [Cucumis melo])

HSP 1 Score: 106.7 bits (265), Expect = 2.8e-20
Identity = 55/116 (47.41%), Postives = 74/116 (63.79%), Query Frame = 1 

Query: 6   DSEAHALNPNARREEEEALYDRFAQRLINALAQQL---KKNFGIGRLKALGATEFNGIEN 65
           +S+A +  P+     EE L DR AQRLI+ +       +K +GI RLKALGAT F G  N
Sbjct: 46  ESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTN 105

Query: 66  PEEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLE----RAEDWWILEENKRGIVS 115
           P +AE W+  +EKCFRV +CP++R+V LA FLL      + EDWW +EE++R I S
Sbjct: 106 PADAEAWLTLIEKCFRVTRCPEDRKVELASFLLQNGGGAKGEDWWRMEESRRRITS 161

[Close]
BLAST of CSPI02G09690 vs. NCBI nr
Match: gi|700202872|gb|KGN58005.1| (hypothetical protein Csa_3G426910 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 2.6e-18
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 1 

Query: 5  IDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIGRLKALGATEFNGIENPE 64
          ++SEAH++N NA +E++E +YDR  QRL++ +A Q +K FGI RLKALGATEF G   PE
Sbjct: 1  MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPE 60

Query: 65 EAEKWIRTLEKCFR 79
          E EKWIRTLEKCFR
Sbjct: 61 EFEKWIRTLEKCFR 74

[Close]
BLAST of CSPI02G09690 vs. NCBI nr
Match: gi|659068829|ref|XP_008446512.1| (PREDICTED: uncharacterized protein LOC103489219 [Cucumis melo])

HSP 1 Score: 93.2 bits (230), Expect = 3.2e-16
Identity = 46/101 (45.54%), Postives = 62/101 (61.39%), Query Frame = 1 

Query: 6   DSEAHALNPNARREEEEALYDRFAQRLINALAQ---QLKKNFGIGRLKALGATEFNGIEN 65
           + +A +  P+     EE L DR AQR ++ +      L+K F I RLKALG+T F    N
Sbjct: 27  EPDAESSRPHVEGNVEEQLLDRLAQRFVSRIKSTQSDLEKKFEIERLKALGSTTFARTTN 86

Query: 66  PEEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDWW 104
           P  AE W+  +EKCFRVM+C ++R+V L+ FLL   AEDWW
Sbjct: 87  PANAEAWLTLIEKCFRVMRCSEDRKVELSAFLLQNGAEDWW 127

[Close]
BLAST of CSPI02G09690 vs. NCBI nr
Match: gi|659098594|ref|XP_008450217.1| (PREDICTED: uncharacterized protein LOC103491879 [Cucumis melo])

HSP 1 Score: 86.3 bits (212), Expect = 3.9e-14
Identity = 49/114 (42.98%), Postives = 65/114 (57.02%), Query Frame = 1 

Query: 1   MEPTIDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIGRLKALGATEFNGI 60
           +EPT+ +EAH    + RRE  E L +R  Q L  +      K F I RLKA+    F G 
Sbjct: 15  IEPTL-AEAHLDKQDVRRERGEMLLERVEQPLSKS-----GKQFSIKRLKAVRVMTFEGT 74

Query: 61  ENPEEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDWWILEENKRGIVS 115
             P  A++W+  +EKCF V++ PKER+V LA FLL    EDWWIL   + G V+
Sbjct: 75  TYPSNAKRWMNLVEKCFGVLEWPKERKVKLATFLLQGGTEDWWILYAARVGGVN 122

The following BLAST results are available for this feature:
BLAST of CSPI02G09690 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G09690 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LI31_CUCSA1.1e-5596.49Uncharacterized protein OS=Cucumis sativus GN=Csa_2G163160 PE=4 SV=1[more]
A0A0A0L7X2_CUCSA1.8e-1863.51Uncharacterized protein OS=Cucumis sativus GN=Csa_3G426910 PE=4 SV=1[more]
A0A0A0LVF8_CUCSA2.4e-1045.16Uncharacterized protein OS=Cucumis sativus GN=Csa_1G165220 PE=4 SV=1[more]
A0A0A0KCZ4_CUCSA5.8e-0950.72Uncharacterized protein OS=Cucumis sativus GN=Csa_6G127310 PE=4 SV=1[more]
M5VK25_PRUPE2.2e-0853.45Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1[more]
BLAST of CSPI02G09690 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G09690 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206416|gb|KGN61535.1|1.6e-5596.49hypothetical protein Csa_2G163160 [Cucumis sativus][more]
gi|659072264|ref|XP_008464580.1|2.8e-2047.41PREDICTED: uncharacterized protein LOC103502419 [Cucumis melo][more]
gi|700202872|gb|KGN58005.1|2.6e-1863.51hypothetical protein Csa_3G426910 [Cucumis sativus][more]
gi|659068829|ref|XP_008446512.1|3.2e-1645.54PREDICTED: uncharacterized protein LOC103489219 [Cucumis melo][more]
gi|659098594|ref|XP_008450217.1|3.9e-1442.98PREDICTED: uncharacterized protein LOC103491879 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G09690.1CSPI02G09690.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI02G09690Csa2G163160Cucumber (Chinese Long) v2cpicuB065
CSPI02G09690CsaV3_2G012150Cucumber (Chinese Long) v3cpicucB080
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI02G09690Melon (DHL92) v3.5.1cpimeB141
CSPI02G09690Melon (DHL92) v3.5.1cpimeB144
CSPI02G09690Watermelon (Charleston Gray)cpiwcgB141
CSPI02G09690Watermelon (Charleston Gray)cpiwcgB156
CSPI02G09690Watermelon (Charleston Gray)cpiwcgB163
CSPI02G09690Watermelon (97103) v1cpiwmB125
CSPI02G09690Watermelon (97103) v1cpiwmB174
CSPI02G09690Cucurbita pepo (Zucchini)cpecpiB126
CSPI02G09690Cucurbita pepo (Zucchini)cpecpiB306
CSPI02G09690Cucurbita pepo (Zucchini)cpecpiB598
CSPI02G09690Cucurbita pepo (Zucchini)cpecpiB851
CSPI02G09690Bottle gourd (USVL1VR-Ls)cpilsiB085
CSPI02G09690Bottle gourd (USVL1VR-Ls)cpilsiB125
CSPI02G09690Melon (DHL92) v3.6.1cpimedB134
CSPI02G09690Melon (DHL92) v3.6.1cpimedB137
CSPI02G09690Cucumber (Gy14) v2cgybcpiB056
CSPI02G09690Cucumber (Gy14) v2cgybcpiB100
CSPI02G09690Silver-seed gourdcarcpiB0259
CSPI02G09690Silver-seed gourdcarcpiB0265
CSPI02G09690Silver-seed gourdcarcpiB0995
CSPI02G09690Silver-seed gourdcarcpiB1112
CSPI02G09690Cucumber (Chinese Long) v3cpicucB088
CSPI02G09690Cucumber (Chinese Long) v3cpicucB097
CSPI02G09690Watermelon (97103) v2cpiwmbB133
CSPI02G09690Watermelon (97103) v2cpiwmbB149
CSPI02G09690Watermelon (97103) v2cpiwmbB157
CSPI02G09690Wax gourdcpiwgoB122
CSPI02G09690Wax gourdcpiwgoB127
CSPI02G09690Wild cucumber (PI 183967)cpicpiB057
CSPI02G09690Wild cucumber (PI 183967)cpicpiB070
CSPI02G09690Cucumber (Gy14) v1cgycpiB305
CSPI02G09690Cucumber (Gy14) v1cgycpiB378
CSPI02G09690Cucurbita maxima (Rimu)cmacpiB240
CSPI02G09690Cucurbita maxima (Rimu)cmacpiB354
CSPI02G09690Cucurbita maxima (Rimu)cmacpiB591
CSPI02G09690Cucurbita maxima (Rimu)cmacpiB825
CSPI02G09690Cucurbita maxima (Rimu)cmacpiB899
CSPI02G09690Cucurbita moschata (Rifu)cmocpiB228
CSPI02G09690Cucurbita moschata (Rifu)cmocpiB346
CSPI02G09690Cucurbita moschata (Rifu)cmocpiB580
CSPI02G09690Cucurbita moschata (Rifu)cmocpiB812
CSPI02G09690Cucurbita moschata (Rifu)cmocpiB879
CSPI02G09690Cucumber (Chinese Long) v2cpicuB069
CSPI02G09690Cucumber (Chinese Long) v2cpicuB079