Csa2G163160 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G163160
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Gag protease polyprotein
Location	Chr2 : 9346543 .. 9346887 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCTACCATAGATTCAGAGGCTCATGCATTAAATCCAAACGCAAGGAGAGAAGAAGAAGAAGCGTTGTATGATAGATTTGCGCAAAGATTAATTAACGCCTTGGCACAACAACTGAAGAAAAACTTTGGTATAGAAAGGGTTAAGGCATTAGGTGCTACGGAATTCAATGGGATAGAGAATCATGAGGAAGCAGAGAAATGGATCCGAACACTGGAGAAGTGTTTTCGAGTAATGCAATGCCCAAAGGAAAGAAGAGTTAATTTGGCGGTGTTCCTACTTCTGGAAAGGGCAGAAGATTGGTGGATACTTGAAGAAAATAGGAGAGGAATAGTTAGCTAA

mRNA sequence

ATGGAACCTACCATAGATTCAGAGGCTCATGCATTAAATCCAAACGCAAGGAGAGAAGAAGAAGAAGCGTTGTATGATAGATTTGCGCAAAGATTAATTAACGCCTTGGCACAACAACTGAAGAAAAACTTTGGTATAGAAAGGGTTAAGGCATTAGGTGCTACGGAATTCAATGGGATAGAGAATCATGAGGAAGCAGAGAAATGGATCCGAACACTGGAGAAGTGTTTTCGAGTAATGCAATGCCCAAAGGAAAGAAGAGTTAATTTGGCGGTGTTCCTACTTCTGGAAAGGGCAGAAGATTGGTGGATACTTGAAGAAAATAGGAGAGGAATAGTTAGCTAA

Coding sequence (CDS)

ATGGAACCTACCATAGATTCAGAGGCTCATGCATTAAATCCAAACGCAAGGAGAGAAGAAGAAGAAGCGTTGTATGATAGATTTGCGCAAAGATTAATTAACGCCTTGGCACAACAACTGAAGAAAAACTTTGGTATAGAAAGGGTTAAGGCATTAGGTGCTACGGAATTCAATGGGATAGAGAATCATGAGGAAGCAGAGAAATGGATCCGAACACTGGAGAAGTGTTTTCGAGTAATGCAATGCCCAAAGGAAAGAAGAGTTAATTTGGCGGTGTTCCTACTTCTGGAAAGGGCAGAAGATTGGTGGATACTTGAAGAAAATAGGAGAGGAATAGTTAGCTAA

Protein sequence

MEPTIDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGIENHEEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDWWILEENRRGIVS*

Homology

[Close]

BLAST of Csa2G163160 vs. TrEMBL
Match: A0A0A0LI31_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G163160 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 2.3e-58
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1


Query: 1   MEPTIDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGI 60
           MEPTIDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGI
Sbjct: 1   MEPTIDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGI 60

Query: 61  ENHEEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDWWILEENRRGIVS 115
           ENHEEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDWWILEENRRGIVS
Sbjct: 61  ENHEEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDWWILEENRRGIVS 114

[Close]

BLAST of Csa2G163160 vs. TrEMBL
Match: A0A0A0L7X2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G426910 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.1e-18
Identity = 46/74 (62.16%), Postives = 59/74 (79.73%), Query Frame = 1


Query: 5  IDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGIENHE 64
          ++SEAH++N NA +E++E +YDR  QRL++ +A Q +K FGIER+KALGATEF G    E
Sbjct: 1  MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPE 60

Query: 65 EAEKWIRTLEKCFR 79
          E EKWIRTLEKCFR
Sbjct: 61 EFEKWIRTLEKCFR 74

[Close]

BLAST of Csa2G163160 vs. TrEMBL
Match: A0A0A0LVF8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G165220 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-11
Identity = 44/93 (47.31%), Postives = 58/93 (62.37%), Query Frame = 1


Query: 20  EEEALYDRFAQRLINALAQQL-----------KKNFGIERVKALGATEFNGIENHEEAEK 79
           EEE + D+ A +     AQQL           KK +GIE+VKA G  EF+     E+A K
Sbjct: 27  EEEDMDDQGASQ-----AQQLSPLWTQRPSHRKKKYGIEQVKAFGDKEFSRTVELEQANK 86

Query: 80  WIRTLEKCFRVMQCPKERRVNLAVFLLLERAED 102
           W+R LEKCFRV+QC +ER+++LA FLL  +AED
Sbjct: 87  WLRALEKCFRVLQCLEERKIDLAAFLLHRKAED 114

[Close]

BLAST of Csa2G163160 vs. TrEMBL
Match: A0A0A0KCZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G127310 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.6e-09
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 1


Query: 32  LINALAQQLKKNFGIERVKALGATEFNGIENHEEAEKWIRTLEKCFRVMQCPKERRVNLA 91
           LI  L+++ +K FGIER+KAL A EF      E+AEKWIRTLEK FRV+QC +E +V   
Sbjct: 8   LIERLSREPEKKFGIERLKALAAQEFTEKIELEQAEKWIRTLEKSFRVVQCAEESKVEFT 67

Query: 92  VFLLLERAE 101
           V L  ++ +
Sbjct: 68  VLLQCKKEQ 76

[Close]

BLAST of Csa2G163160 vs. TrEMBL
Match: M5VK25_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 8.4e-08
Identity = 31/58 (53.45%), Postives = 37/58 (63.79%), Query Frame = 1


Query: 46  IERVKALGATEFNGIENHEEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDWW 104
           I+RVK LGA EF G  +  EAE WI  +E+ F V++CP E RV LA FLL   A  WW
Sbjct: 74  IKRVKELGAKEFVGSTDPAEAESWITDVERIFEVLECPAEDRVRLATFLLKGNAYHWW 131

[Close]

BLAST of Csa2G163160 vs. NCBI nr
Match: gi|700206416|gb|KGN61535.1| (hypothetical protein Csa_2G163160 [Cucumis sativus])

HSP 1 Score: 232.6 bits (592), Expect = 3.4e-58
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1


Query: 1   MEPTIDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGI 60
           MEPTIDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGI
Sbjct: 1   MEPTIDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGI 60

Query: 61  ENHEEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDWWILEENRRGIVS 115
           ENHEEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDWWILEENRRGIVS
Sbjct: 61  ENHEEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDWWILEENRRGIVS 114

[Close]

BLAST of Csa2G163160 vs. NCBI nr
Match: gi|659072264|ref|XP_008464580.1| (PREDICTED: uncharacterized protein LOC103502419 [Cucumis melo])

HSP 1 Score: 105.9 bits (263), Expect = 4.7e-20
Identity = 55/116 (47.41%), Postives = 74/116 (63.79%), Query Frame = 1


Query: 6   DSEAHALNPNARREEEEALYDRFAQRLINALAQQL---KKNFGIERVKALGATEFNGIEN 65
           +S+A +  P+     EE L DR AQRLI+ +       +K +GIER+KALGAT F G  N
Sbjct: 46  ESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTN 105

Query: 66  HEEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLE----RAEDWWILEENRRGIVS 115
             +AE W+  +EKCFRV +CP++R+V LA FLL      + EDWW +EE+RR I S
Sbjct: 106 PADAEAWLTLIEKCFRVTRCPEDRKVELASFLLQNGGGAKGEDWWRMEESRRRITS 161

[Close]

BLAST of Csa2G163160 vs. NCBI nr
Match: gi|700202872|gb|KGN58005.1| (hypothetical protein Csa_3G426910 [Cucumis sativus])

HSP 1 Score: 99.4 bits (246), Expect = 4.4e-18
Identity = 46/74 (62.16%), Postives = 59/74 (79.73%), Query Frame = 1


Query: 5  IDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGIENHE 64
          ++SEAH++N NA +E++E +YDR  QRL++ +A Q +K FGIER+KALGATEF G    E
Sbjct: 1  MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPE 60

Query: 65 EAEKWIRTLEKCFR 79
          E EKWIRTLEKCFR
Sbjct: 61 EFEKWIRTLEKCFR 74

[Close]

BLAST of Csa2G163160 vs. NCBI nr
Match: gi|659068829|ref|XP_008446512.1| (PREDICTED: uncharacterized protein LOC103489219 [Cucumis melo])

HSP 1 Score: 92.4 bits (228), Expect = 5.4e-16
Identity = 45/101 (44.55%), Postives = 62/101 (61.39%), Query Frame = 1


Query: 6   DSEAHALNPNARREEEEALYDRFAQRLINALAQ---QLKKNFGIERVKALGATEFNGIEN 65
           + +A +  P+     EE L DR AQR ++ +      L+K F IER+KALG+T F    N
Sbjct: 27  EPDAESSRPHVEGNVEEQLLDRLAQRFVSRIKSTQSDLEKKFEIERLKALGSTTFARTTN 86

Query: 66  HEEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDWW 104
              AE W+  +EKCFRVM+C ++R+V L+ FLL   AEDWW
Sbjct: 87  PANAEAWLTLIEKCFRVMRCSEDRKVELSAFLLQNGAEDWW 127

[Close]

BLAST of Csa2G163160 vs. NCBI nr
Match: gi|659098594|ref|XP_008450217.1| (PREDICTED: uncharacterized protein LOC103491879 [Cucumis melo])

HSP 1 Score: 83.6 bits (205), Expect = 2.5e-13
Identity = 48/114 (42.11%), Postives = 65/114 (57.02%), Query Frame = 1


Query: 1   MEPTIDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGI 60
           +EPT+ +EAH    + RRE  E L +R  Q L  +      K F I+R+KA+    F G 
Sbjct: 15  IEPTL-AEAHLDKQDVRRERGEMLLERVEQPLSKS-----GKQFSIKRLKAVRVMTFEGT 74

Query: 61  ENHEEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDWWILEENRRGIVS 115
                A++W+  +EKCF V++ PKER+V LA FLL    EDWWIL   R G V+
Sbjct: 75  TYPSNAKRWMNLVEKCFGVLEWPKERKVKLATFLLQGGTEDWWILYAARVGGVN 122

The following BLAST results are available for this feature:

BLAST of Csa2G163160 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LI31_CUCSA	2.3e-58	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G163160 PE=4 SV=1	[more]
A0A0A0L7X2_CUCSA	3.1e-18	62.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G426910 PE=4 SV=1	[more]
A0A0A0LVF8_CUCSA	1.6e-11	47.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G165220 PE=4 SV=1	[more]
A0A0A0KCZ4_CUCSA	2.6e-09	50.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G127310 PE=4 SV=1	[more]
M5VK25_PRUPE	8.4e-08	53.45	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1	[more]

BLAST of Csa2G163160 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206416\|gb\|KGN61535.1\|	3.4e-58	100.00	hypothetical protein Csa_2G163160 [Cucumis sativus]	[more]
gi\|659072264\|ref\|XP_008464580.1\|	4.7e-20	47.41	PREDICTED: uncharacterized protein LOC103502419 [Cucumis melo]	[more]
gi\|700202872\|gb\|KGN58005.1\|	4.4e-18	62.16	hypothetical protein Csa_3G426910 [Cucumis sativus]	[more]
gi\|659068829\|ref\|XP_008446512.1\|	5.4e-16	44.55	PREDICTED: uncharacterized protein LOC103489219 [Cucumis melo]	[more]
gi\|659098594\|ref\|XP_008450217.1\|	2.5e-13	42.11	PREDICTED: uncharacterized protein LOC103491879 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa2G163160.1	Csa2G163160.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa2G163160	CSPI02G09690	Wild cucumber (PI 183967)	cpicuB065

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa2G163160	Watermelon (97103) v2	cuwmbB131
Csa2G163160	Watermelon (97103) v2	cuwmbB147
Csa2G163160	Watermelon (97103) v2	cuwmbB154
Csa2G163160	Wax gourd	cuwgoB121
Csa2G163160	Wax gourd	cuwgoB126
Csa2G163160	Cucumber (Chinese Long) v2	cucuB050
Csa2G163160	Cucumber (Chinese Long) v2	cucuB060
Csa2G163160	Cucumber (Gy14) v1	cgycuB296
Csa2G163160	Cucumber (Gy14) v1	cgycuB362
Csa2G163160	Cucurbita maxima (Rimu)	cmacuB238
Csa2G163160	Cucurbita maxima (Rimu)	cmacuB350
Csa2G163160	Cucurbita maxima (Rimu)	cmacuB585
Csa2G163160	Cucurbita maxima (Rimu)	cmacuB813
Csa2G163160	Cucurbita maxima (Rimu)	cmacuB881
Csa2G163160	Cucurbita moschata (Rifu)	cmocuB225
Csa2G163160	Cucurbita moschata (Rifu)	cmocuB339
Csa2G163160	Cucurbita moschata (Rifu)	cmocuB576
Csa2G163160	Cucurbita moschata (Rifu)	cmocuB805
Csa2G163160	Cucurbita moschata (Rifu)	cmocuB868
Csa2G163160	Melon (DHL92) v3.5.1	cumeB131
Csa2G163160	Melon (DHL92) v3.5.1	cumeB145
Csa2G163160	Watermelon (Charleston Gray)	cuwcgB136
Csa2G163160	Watermelon (Charleston Gray)	cuwcgB153
Csa2G163160	Watermelon (Charleston Gray)	cuwcgB160
Csa2G163160	Watermelon (97103) v1	cuwmB122
Csa2G163160	Watermelon (97103) v1	cuwmB172
Csa2G163160	Cucurbita pepo (Zucchini)	cpecuB127
Csa2G163160	Cucurbita pepo (Zucchini)	cpecuB306
Csa2G163160	Cucurbita pepo (Zucchini)	cpecuB596
Csa2G163160	Cucurbita pepo (Zucchini)	cpecuB715
Csa2G163160	Cucurbita pepo (Zucchini)	cpecuB849
Csa2G163160	Bottle gourd (USVL1VR-Ls)	culsiB087
Csa2G163160	Bottle gourd (USVL1VR-Ls)	culsiB127
Csa2G163160	Cucumber (Gy14) v2	cgybcuB056
Csa2G163160	Cucumber (Gy14) v2	cgybcuB101
Csa2G163160	Melon (DHL92) v3.6.1	cumedB134
Csa2G163160	Melon (DHL92) v3.6.1	cumedB137
Csa2G163160	Silver-seed gourd	carcuB0254
Csa2G163160	Silver-seed gourd	carcuB0261
Csa2G163160	Silver-seed gourd	carcuB0974
Csa2G163160	Silver-seed gourd	carcuB1090