CsaV3_2G012150.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G012150.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Transposon Ty3-I Gag-Pol polyprotein
Location	chr2 : 9637441 .. 9638680 (+)
Sequence length	345

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTATTCCCAAAGGGTTTTCAAAAATATCACTCACTAAGTCTTTTGACTTATTATTTAAGTTTTTCCTTTCCACGTTGTAAGAAGCTAAGCGATCAGGTTGAAAGGTAAGTTAACGATGCTAAGCAATCGTGTTAAAAGGTAAGAGATCGTTAAAGGCAAAAGACTACGAAGGCTTTCAACATTTCTTTGTTAAGCTCTTGTTTTGGGAATTTGTATCTTGTTTTGTACTGTTTACTGAGGTATTTTATGTTGTGTGGTATTTATTTAAGTTTAAGTTAAGATGTGTCAAACGATTGATGCAGGGCGTGACAATTTGGTATCAGAGTATTACGTTCGTTGGGAGCTAAGTATATATTTAAGTTCTTTTTTAGAAAGGAATATAGAAAATATGCGACCAAGAAGAGGAAGGGAGCAGGAATAGATCAAGGTTGAAAATGGAACCTACCATAGATTCAGAGGCTCATGCATTAAATCCAAACGCAAGGAGAGAAGAAGAAGAAGCGTTGTATGATAGATTTGCGCAAAGATTAATTAACGCCTTGGCACAACAACTGAAGAAAAACTTTGGTATAGAAAGGGTTAAGGCATTAGGTGCTACGGAATTCAATGGGATAGAGAATCATGAGGAAGCAGAGAAATGGATCCGAACACTGGAGAAGTGTTTTCGAGTAATGCAATGCCCAAAGGAAAGAAGAGTTAATTTGGCGGTGTTCCTACTTCTGGAAAGGGCAGAAGATTGGTGGATACTTGAAGAAAATAGGAGAGGAATAGTTAGCTAAAAAGAGTTCAGAGAAATATTTAATAGTAAGTTTTTCTCTAAGACTTGCAGAGATGAAAGGCGAGATAAGTTCCTTCATTTGAAATAAGGGGAACTTTTGATTGCAGATTACGAAAAGAAGTTTACATAATTAATTAGGTATGTGATGGAAATACTCGATACTGAGAGAGAAGGATGCAAGTGATTTGAGAATAAATTAAGAGGGTTGGATTCTAATGTCCTCTGTTCACATGTTCTTATACTCCACCTTGATGACTTTAGAGATGGGCTCAAATCCTTCATCTGCAACTTCTTAAGCATCAAAATATGAAATCGGTGACTTTTAATTTTTTGTATATTTATTTTCCCAAAACATTTACCGCGGATTCTTCATTGACTTAATTTTTTTTAAGATCACCATTGTTGTTAGCAAATAAATTGGTTATATTTCATGTATGCAAATTAGGGTTGATGAGTTTAAAA

mRNA sequence

ATGGAACCTACCATAGATTCAGAGGCTCATGCATTAAATCCAAACGCAAGGAGAGAAGAAGAAGAAGCGTTGTATGATAGATTTGCGCAAAGATTAATTAACGCCTTGGCACAACAACTGAAGAAAAACTTTGGTATAGAAAGGGTTAAGGCATTAGGTGCTACGGAATTCAATGGGATAGAGAATCATGAGGAAGCAGAGAAATGGATCCGAACACTGGAGAAGTGTTTTCGAGTAATGCAATGCCCAAAGGAAAGAAGAGTTAATTTGGCGGTGTTCCTACTTCTGGAAAGGGCAGAAGATTGGTGGATACTTGAAGAAAATAGGAGAGGAATAGTTAGCTAA

Coding sequence (CDS)

ATGGAACCTACCATAGATTCAGAGGCTCATGCATTAAATCCAAACGCAAGGAGAGAAGAAGAAGAAGCGTTGTATGATAGATTTGCGCAAAGATTAATTAACGCCTTGGCACAACAACTGAAGAAAAACTTTGGTATAGAAAGGGTTAAGGCATTAGGTGCTACGGAATTCAATGGGATAGAGAATCATGAGGAAGCAGAGAAATGGATCCGAACACTGGAGAAGTGTTTTCGAGTAATGCAATGCCCAAAGGAAAGAAGAGTTAATTTGGCGGTGTTCCTACTTCTGGAAAGGGCAGAAGATTGGTGGATACTTGAAGAAAATAGGAGAGGAATAGTTAGCTAA

Protein sequence

MEPTIDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGIENHEEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDWWILEENRRGIVS

Homology

[Close]

BLAST of CsaV3_2G012150.1 vs. NCBI nr
Match: KGN61535.1 (hypothetical protein Csa_2G163160 [Cucumis sativus])

HSP 1 Score: 232.3 bits (591), Expect = 8.5e-58
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MEPTIDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGI 60
           MEPTIDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGI
Sbjct: 1   MEPTIDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGI 60

Query: 61  ENHEEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDWWILEENRRGIVS 115
           ENHEEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDWWILEENRRGIVS
Sbjct: 61  ENHEEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDWWILEENRRGIVS 114

[Close]

BLAST of CsaV3_2G012150.1 vs. NCBI nr
Match: KGN58005.1 (hypothetical protein Csa_3G426910 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 4.3e-17
Identity = 46/74 (62.16%), Postives = 59/74 (79.73%), Query Frame = 0


Query: 5  IDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGIENHE 64
          ++SEAH++N NA +E++E +YDR  QRL++ +A Q +K FGIER+KALGATEF G    E
Sbjct: 1  MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPE 60

Query: 65 EAEKWIRTLEKCFR 79
          E EKWIRTLEKCFR
Sbjct: 61 EFEKWIRTLEKCFR 74

[Close]

BLAST of CsaV3_2G012150.1 vs. NCBI nr
Match: XP_008456815.1 (PREDICTED: uncharacterized protein LOC103496653 [Cucumis melo])

HSP 1 Score: 78.2 bits (191), Expect = 2.1e-11
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 44  FGIERVKALGATEFNGIENHEEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDWW 103
           +GIER+K LGAT F G  +  +A+ W+  LEKCF VM CP+ER+V LA FLL + AE WW
Sbjct: 2   YGIERLKKLGATVFEGSTDLADADAWLNMLEKCFDVMSCPQERKVRLATFLLQKEAEGWW 61

[Close]

BLAST of CsaV3_2G012150.1 vs. NCBI nr
Match: XP_016899851.1 (PREDICTED: uncharacterized protein LOC103487680 [Cucumis melo])

HSP 1 Score: 76.6 bits (187), Expect = 6.0e-11
Identity = 42/99 (42.42%), Postives = 56/99 (56.57%), Query Frame = 0


Query: 7   SEAHALNPNARREEEEALYDRFAQRLI---NALAQQLKKNFGIERVKALGATEFNGIENH 66
           SE  +  P  + E     + R AQ +     A    L K +GIE++K LGAT F G  + 
Sbjct: 24  SERGSSTPRGQNEVGSERFARSAQEISRPERARPSDLDKMYGIEQLKKLGATVFQGSTDP 83

Query: 67  EEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDW 103
            +AE W+  LEKCF VM CP+E++V LA FLL + AE W
Sbjct: 84  ADAEVWLNMLEKCFDVMSCPQEQKVRLATFLLQKEAEGW 122

[Close]

BLAST of CsaV3_2G012150.1 vs. NCBI nr
Match: KGN64939.1 (hypothetical protein Csa_1G165220 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 7.8e-11
Identity = 44/93 (47.31%), Postives = 58/93 (62.37%), Query Frame = 0


Query: 20  EEEALYDRFAQRLINALAQQL-----------KKNFGIERVKALGATEFNGIENHEEAEK 79
           EEE + D+ A +     AQQL           KK +GIE+VKA G  EF+     E+A K
Sbjct: 27  EEEDMDDQGASQ-----AQQLSPLWTQRPSHRKKKYGIEQVKAFGDKEFSRTVELEQANK 86

Query: 80  WIRTLEKCFRVMQCPKERRVNLAVFLLLERAED 102
           W+R LEKCFRV+QC +ER+++LA FLL  +AED
Sbjct: 87  WLRALEKCFRVLQCLEERKIDLAAFLLHRKAED 114

[Close]

BLAST of CsaV3_2G012150.1 vs. TrEMBL
Match: tr|A0A0A0LI31|A0A0A0LI31_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G163160 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 5.6e-58
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MEPTIDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGI 60
           MEPTIDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGI
Sbjct: 1   MEPTIDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGI 60

Query: 61  ENHEEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDWWILEENRRGIVS 115
           ENHEEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDWWILEENRRGIVS
Sbjct: 61  ENHEEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDWWILEENRRGIVS 114

[Close]

BLAST of CsaV3_2G012150.1 vs. TrEMBL
Match: tr|A0A0A0L7X2|A0A0A0L7X2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G426910 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.8e-17
Identity = 46/74 (62.16%), Postives = 59/74 (79.73%), Query Frame = 0


Query: 5  IDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGIENHE 64
          ++SEAH++N NA +E++E +YDR  QRL++ +A Q +K FGIER+KALGATEF G    E
Sbjct: 1  MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPE 60

Query: 65 EAEKWIRTLEKCFR 79
          E EKWIRTLEKCFR
Sbjct: 61 EFEKWIRTLEKCFR 74

[Close]

BLAST of CsaV3_2G012150.1 vs. TrEMBL
Match: tr|A0A1S3C3Q7|A0A1S3C3Q7_CUCME (uncharacterized protein LOC103496653 OS=Cucumis melo OX=3656 GN=LOC103496653 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.4e-11
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 44  FGIERVKALGATEFNGIENHEEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDWW 103
           +GIER+K LGAT F G  +  +A+ W+  LEKCF VM CP+ER+V LA FLL + AE WW
Sbjct: 2   YGIERLKKLGATVFEGSTDLADADAWLNMLEKCFDVMSCPQERKVRLATFLLQKEAEGWW 61

[Close]

BLAST of CsaV3_2G012150.1 vs. TrEMBL
Match: tr|A0A1S4DV40|A0A1S4DV40_CUCME (uncharacterized protein LOC103487680 OS=Cucumis melo OX=3656 GN=LOC103487680 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 4.0e-11
Identity = 42/99 (42.42%), Postives = 56/99 (56.57%), Query Frame = 0


Query: 7   SEAHALNPNARREEEEALYDRFAQRLI---NALAQQLKKNFGIERVKALGATEFNGIENH 66
           SE  +  P  + E     + R AQ +     A    L K +GIE++K LGAT F G  + 
Sbjct: 24  SERGSSTPRGQNEVGSERFARSAQEISRPERARPSDLDKMYGIEQLKKLGATVFQGSTDP 83

Query: 67  EEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDW 103
            +AE W+  LEKCF VM CP+E++V LA FLL + AE W
Sbjct: 84  ADAEVWLNMLEKCFDVMSCPQEQKVRLATFLLQKEAEGW 122

[Close]

BLAST of CsaV3_2G012150.1 vs. TrEMBL
Match: tr|A0A1S4E079|A0A1S4E079_CUCME (uncharacterized protein LOC107991239 OS=Cucumis melo OX=3656 GN=LOC107991239 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.2e-11
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 44  FGIERVKALGATEFNGIENHEEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDWW 103
           +GIER+K L AT F G  +  +AE W+  LEKCF VM CP+ER+V LA FLL + AE WW
Sbjct: 2   YGIERLKKLRATVFEGSTDPADAEVWLNMLEKCFDVMSCPQERKVRLATFLLQKEAEGWW 61

The following BLAST results are available for this feature:

BLAST of CsaV3_2G012150.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61535.1	8.5e-58	100.00	hypothetical protein Csa_2G163160 [Cucumis sativus]	[more]
KGN58005.1	4.3e-17	62.16	hypothetical protein Csa_3G426910 [Cucumis sativus]	[more]
XP_008456815.1	2.1e-11	56.67	PREDICTED: uncharacterized protein LOC103496653 [Cucumis melo]	[more]
XP_016899851.1	6.0e-11	42.42	PREDICTED: uncharacterized protein LOC103487680 [Cucumis melo]	[more]
KGN64939.1	7.8e-11	47.31	hypothetical protein Csa_1G165220 [Cucumis sativus]	[more]

BLAST of CsaV3_2G012150.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G012150.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G012150.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LI31\|A0A0A0LI31_CUCSA	5.6e-58	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G163160 PE=4 SV=1	[more]
tr\|A0A0A0L7X2\|A0A0A0L7X2_CUCSA	2.8e-17	62.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G426910 PE=4 SV=1	[more]
tr\|A0A1S3C3Q7\|A0A1S3C3Q7_CUCME	1.4e-11	56.67	uncharacterized protein LOC103496653 OS=Cucumis melo OX=3656 GN=LOC103496653 PE=...	[more]
tr\|A0A1S4DV40\|A0A1S4DV40_CUCME	4.0e-11	42.42	uncharacterized protein LOC103487680 OS=Cucumis melo OX=3656 GN=LOC103487680 PE=...	[more]
tr\|A0A1S4E079\|A0A1S4E079_CUCME	5.2e-11	56.67	uncharacterized protein LOC107991239 OS=Cucumis melo OX=3656 GN=LOC107991239 PE=...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_2G012150	CsaV3_2G012150	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G012150.1.exon1	CsaV3_2G012150.1.exon1	exon
CsaV3_2G012150.1.exon2	CsaV3_2G012150.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G012150.1.cds2	CsaV3_2G012150.1.cds2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G012150.1	CsaV3_2G012150.1-protein	polypeptide