CsaV3_1G007840 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G007840
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	E3 ubiquitin-protein ligase
Location	chr1 : 4958013 .. 4958684 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCACCCCCGCCATCTCCGGCCTCCACTGCGAGGTCTGGCAGCCCCAAGACTTCTCCGAACCTTCCTGTTCGTCTTCTTCTTCTTCTTCTCAATTTCAACCCCCTGAATTCTTCATCGATTTCTACGTTTCCTCTTACGCAACTCATGGCGACGAAGTCATCAGCACACTCCGTTACAAGAATTTCCGGCAAAGATGTGACGTTCTAACTCAAGATTCTTTCTCTTGGTCTGCAATTTCCTCTATGCTTTCAGAAACCAATGTCCCTTATCATCTTCAACCTTTTTTCATTCACCAAATTTCTACTAGAGCTCGTGGAATCGCAACCGAACCCATTAACGCTCTCTCCCGAACCATTCCGATGGTCGTCGAGCTGATACTCCCCGAAGACGCCATGGAAGATTCCGGTTATGGGTCCGAACCCCACATGGGAATTGGGTCGGGTCGGGCCAGTAGGGCTTCGATTCAGGAAATGGAGAGAATTGAAATTGATGGGGTTTTGAGTGATTGTGTGATCTGTTTGGATGAGATTGGTTCAATTGGGTGTGAAATTGATGTTGTTCAAATGCCTTGTTTACATGTTTATCATCTAAATTGTATTCATAAATGGCTGGAACTCAGTAATCGTTGCCCATTGTGTCGGTTTCAGATGCCATTGGAAGAAGAATGA

mRNA sequence

ATGTCCACCCCCGCCATCTCCGGCCTCCACTGCGAGGTCTGGCAGCCCCAAGACTTCTCCGAACCTTCCTGTTCGTCTTCTTCTTCTTCTTCTCAATTTCAACCCCCTGAATTCTTCATCGATTTCTACGTTTCCTCTTACGCAACTCATGGCGACGAAGTCATCAGCACACTCCGTTACAAGAATTTCCGGCAAAGATGTGACGTTCTAACTCAAGATTCTTTCTCTTGGTCTGCAATTTCCTCTATGCTTTCAGAAACCAATGTCCCTTATCATCTTCAACCTTTTTTCATTCACCAAATTTCTACTAGAGCTCGTGGAATCGCAACCGAACCCATTAACGCTCTCTCCCGAACCATTCCGATGGTCGTCGAGCTGATACTCCCCGAAGACGCCATGGAAGATTCCGGTTATGGGTCCGAACCCCACATGGGAATTGGGTCGGGTCGGGCCAGTAGGGCTTCGATTCAGGAAATGGAGAGAATTGAAATTGATGGGGTTTTGAGTGATTGTGTGATCTGTTTGGATGAGATTGGTTCAATTGGGTGTGAAATTGATGTTGTTCAAATGCCTTGTTTACATGTTTATCATCTAAATTGTATTCATAAATGGCTGGAACTCAGTAATCGTTGCCCATTGTGTCGGTTTCAGATGCCATTGGAAGAAGAATGA

Coding sequence (CDS)

ATGTCCACCCCCGCCATCTCCGGCCTCCACTGCGAGGTCTGGCAGCCCCAAGACTTCTCCGAACCTTCCTGTTCGTCTTCTTCTTCTTCTTCTCAATTTCAACCCCCTGAATTCTTCATCGATTTCTACGTTTCCTCTTACGCAACTCATGGCGACGAAGTCATCAGCACACTCCGTTACAAGAATTTCCGGCAAAGATGTGACGTTCTAACTCAAGATTCTTTCTCTTGGTCTGCAATTTCCTCTATGCTTTCAGAAACCAATGTCCCTTATCATCTTCAACCTTTTTTCATTCACCAAATTTCTACTAGAGCTCGTGGAATCGCAACCGAACCCATTAACGCTCTCTCCCGAACCATTCCGATGGTCGTCGAGCTGATACTCCCCGAAGACGCCATGGAAGATTCCGGTTATGGGTCCGAACCCCACATGGGAATTGGGTCGGGTCGGGCCAGTAGGGCTTCGATTCAGGAAATGGAGAGAATTGAAATTGATGGGGTTTTGAGTGATTGTGTGATCTGTTTGGATGAGATTGGTTCAATTGGGTGTGAAATTGATGTTGTTCAAATGCCTTGTTTACATGTTTATCATCTAAATTGTATTCATAAATGGCTGGAACTCAGTAATCGTTGCCCATTGTGTCGGTTTCAGATGCCATTGGAAGAAGAATGA

Protein sequence

MSTPAISGLHCEVWQPQDFSEPSCSSSSSSSQFQPPEFFIDFYVSSYATHGDEVISTLRYKNFRQRCDVLTQDSFSWSAISSMLSETNVPYHLQPFFIHQISTRARGIATEPINALSRTIPMVVELILPEDAMEDSGYGSEPHMGIGSGRASRASIQEMERIEIDGVLSDCVICLDEIGSIGCEIDVVQMPCLHVYHLNCIHKWLELSNRCPLCRFQMPLEEE

Homology

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BLAST of CsaV3_1G007840 vs. NCBI nr
Match: XP_004152533.1 (PREDICTED: LON peptidase N-terminal domain and RING finger protein 2-like [Cucumis sativus] >KGN64248.1 hypothetical protein Csa_1G045460 [Cucumis sativus])

HSP 1 Score: 460.3 bits (1183), Expect = 3.7e-126
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MSTPAISGLHCEVWQPQDFSEPSCSSSSSSSQFQPPEFFIDFYVSSYATHGDEVISTLRY 60
           MSTPAISGLHCEVWQPQDFSEPSCSSSSSSSQFQPPEFFIDFYVSSYATHGDEVISTLRY
Sbjct: 1   MSTPAISGLHCEVWQPQDFSEPSCSSSSSSSQFQPPEFFIDFYVSSYATHGDEVISTLRY 60

Query: 61  KNFRQRCDVLTQDSFSWSAISSMLSETNVPYHLQPFFIHQISTRARGIATEPINALSRTI 120
           KNFRQRCDVLTQDSFSWSAISSMLSETNVPYHLQPFFIHQISTRARGIATEPINALSRTI
Sbjct: 61  KNFRQRCDVLTQDSFSWSAISSMLSETNVPYHLQPFFIHQISTRARGIATEPINALSRTI 120

Query: 121 PMVVELILPEDAMEDSGYGSEPHMGIGSGRASRASIQEMERIEIDGVLSDCVICLDEIGS 180
           PMVVELILPEDAMEDSGYGSEPHMGIGSGRASRASIQEMERIEIDGVLSDCVICLDEIGS
Sbjct: 121 PMVVELILPEDAMEDSGYGSEPHMGIGSGRASRASIQEMERIEIDGVLSDCVICLDEIGS 180

Query: 181 IGCEIDVVQMPCLHVYHLNCIHKWLELSNRCPLCRFQMPLEEE 224
           IGCEIDVVQMPCLHVYHLNCIHKWLELSNRCPLCRFQMPLEEE
Sbjct: 181 IGCEIDVVQMPCLHVYHLNCIHKWLELSNRCPLCRFQMPLEEE 223

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BLAST of CsaV3_1G007840 vs. NCBI nr
Match: XP_008437461.1 (PREDICTED: uncharacterized protein LOC103482872 [Cucumis melo])

HSP 1 Score: 436.8 bits (1122), Expect = 4.4e-119
Identity = 213/219 (97.26%), Postives = 215/219 (98.17%), Query Frame = 0


Query: 5   AISGLHCEVWQPQDFSEPSCSSSSSSSQFQPPEFFIDFYVSSYATHGDEVISTLRYKNFR 64
           AISGLHCEVWQPQDFSEPSC SSSSSSQFQPPEFFIDFYVSSYATHGDEVISTLRYKNFR
Sbjct: 6   AISGLHCEVWQPQDFSEPSC-SSSSSSQFQPPEFFIDFYVSSYATHGDEVISTLRYKNFR 65

Query: 65  QRCDVLTQDSFSWSAISSMLSETNVPYHLQPFFIHQISTRARGIATEPINALSRTIPMVV 124
           QRCDVLTQDSFSWSAISSMLSETNVPYHLQPFFIHQIS RARGIATEPINALSRTIPMVV
Sbjct: 66  QRCDVLTQDSFSWSAISSMLSETNVPYHLQPFFIHQISIRARGIATEPINALSRTIPMVV 125

Query: 125 ELILPEDAMEDSGYGSEPHMGIGSGRASRASIQEMERIEIDGVLSDCVICLDEIGSIGCE 184
           EL+LPEDAME SGYGSEPHMGIGSGRASRASIQEMERIEIDGVLSDCVICLDEIGSIGCE
Sbjct: 126 ELMLPEDAMEGSGYGSEPHMGIGSGRASRASIQEMERIEIDGVLSDCVICLDEIGSIGCE 185

Query: 185 IDVVQMPCLHVYHLNCIHKWLELSNRCPLCRFQMPLEEE 224
           ID V+MPCLHVYHLNCIHKWLELSNRCPLCRFQMPLEEE
Sbjct: 186 IDAVRMPCLHVYHLNCIHKWLELSNRCPLCRFQMPLEEE 223

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BLAST of CsaV3_1G007840 vs. NCBI nr
Match: XP_023519803.1 (RING-H2 finger protein ATL77-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 380.2 bits (975), Expect = 4.9e-102
Identity = 183/219 (83.56%), Postives = 200/219 (91.32%), Query Frame = 0


Query: 5   AISGLHCEVWQPQDFSEPSCSSSSSSSQFQPPEFFIDFYVSSYATHGDEVISTLRYKNFR 64
           A+SGLHCEVWQPQD SE  CS SSSSS+F  PEFFIDFYVSSYAT GD++ISTLRYKNFR
Sbjct: 9   AVSGLHCEVWQPQDLSETHCSFSSSSSEF--PEFFIDFYVSSYATQGDQIISTLRYKNFR 68

Query: 65  QRCDVLTQDSFSWSAISSMLSETNVPYHLQPFFIHQISTRARGIATEPINALSRTIPMVV 124
           QRCDVLTQDSFSWSAIS+MLSETNVPYHLQPFFI QIS  ARGIATEP NALSRTIPMVV
Sbjct: 69  QRCDVLTQDSFSWSAISTMLSETNVPYHLQPFFIQQISISARGIATEPTNALSRTIPMVV 128

Query: 125 ELILPEDAMEDSGYGSEPHMGIGSGRASRASIQEMERIEIDGVLSDCVICLDEIGSIGCE 184
           EL+LPE+AMEDSGYGS+  MG GS RASRASIQEMER+E++GVLSDCVICLD+I S+G E
Sbjct: 129 ELVLPEEAMEDSGYGSDTIMGTGSRRASRASIQEMERVEMNGVLSDCVICLDDIVSVGSE 188

Query: 185 IDVVQMPCLHVYHLNCIHKWLELSNRCPLCRFQMPLEEE 224
           ID ++MPCLH+YH NCIHKWL+LSNRCPLCRFQMPLEEE
Sbjct: 189 IDALRMPCLHIYHRNCIHKWLQLSNRCPLCRFQMPLEEE 225

[Close]

BLAST of CsaV3_1G007840 vs. NCBI nr
Match: XP_023001523.1 (uncharacterized protein LOC111495638 [Cucurbita maxima])

HSP 1 Score: 375.9 bits (964), Expect = 9.3e-101
Identity = 181/219 (82.65%), Postives = 198/219 (90.41%), Query Frame = 0


Query: 5   AISGLHCEVWQPQDFSEPSCSSSSSSSQFQPPEFFIDFYVSSYATHGDEVISTLRYKNFR 64
           A+SGLHCEVWQPQDFSE  CS SSSSS  + PEFFIDFYVSSYAT GD++ISTLRYKNFR
Sbjct: 9   AVSGLHCEVWQPQDFSETHCSFSSSSS--ESPEFFIDFYVSSYATQGDQIISTLRYKNFR 68

Query: 65  QRCDVLTQDSFSWSAISSMLSETNVPYHLQPFFIHQISTRARGIATEPINALSRTIPMVV 124
           QRCDVLTQDSFSWSAIS+MLSETNVPYHLQPFFI QIS  ARGIATEP NALSRTIPMVV
Sbjct: 69  QRCDVLTQDSFSWSAISTMLSETNVPYHLQPFFIQQISISARGIATEPTNALSRTIPMVV 128

Query: 125 ELILPEDAMEDSGYGSEPHMGIGSGRASRASIQEMERIEIDGVLSDCVICLDEIGSIGCE 184
           EL+LPE+AMEDS YGS+  MG GS RASRASIQEMER+E++G LSDCVICLD+I S+G E
Sbjct: 129 ELVLPEEAMEDSSYGSDTIMGTGSRRASRASIQEMERVEMNGALSDCVICLDDIVSVGSE 188

Query: 185 IDVVQMPCLHVYHLNCIHKWLELSNRCPLCRFQMPLEEE 224
           ID ++MPCLH+YH NCIHKWL+LSNRCPLCRFQMPLEEE
Sbjct: 189 IDALRMPCLHIYHRNCIHKWLQLSNRCPLCRFQMPLEEE 225

[Close]

BLAST of CsaV3_1G007840 vs. NCBI nr
Match: XP_022137468.1 (E3 ubiquitin-protein ligase CIP8-like [Momordica charantia])

HSP 1 Score: 271.2 bits (692), Expect = 3.2e-69
Identity = 141/219 (64.38%), Postives = 161/219 (73.52%), Query Frame = 0


Query: 7   SGLHCEVWQPQDFSEPSCSSSSSSSQFQPPEFFIDFYVSSYATHGDEVISTLRYKNFRQR 66
           +GLHCEVWQPQ+++E  CSSSSS    +PPEFFID YVSSYA  G E IS+LRYKNFR+R
Sbjct: 4   AGLHCEVWQPQEWAESDCSSSSS----EPPEFFIDLYVSSYANQGGETISSLRYKNFRRR 63

Query: 67  CDVLTQDSFSWSAISSMLSETNVPYHLQPFFIHQISTRARGIATEPINALSRTIPMVVEL 126
            DV TQDS SWSAIS+MLSET+VPYHLQPFFI  IS RAR IA +P NALSRTIP+VVEL
Sbjct: 64  RDVFTQDSLSWSAISTMLSETSVPYHLQPFFIQHISLRARRIAAQPTNALSRTIPIVVEL 123

Query: 127 ILPEDAMEDSGYGSEPHMGIGSGRASRASIQEMERIEID-GVL-SDCVICLDEIGSIGCE 186
           +             +P +  G GRASRASI+EMER EI+ G+   DC ICLDEI     E
Sbjct: 124 VXXXXXXXXXXXXXDPRVPNGPGRASRASIEEMERAEIELGICGGDCAICLDEI-----E 183

Query: 187 IDVVQMPCLHVYHLNCIHKWLELSNRCPLCRFQMPLEEE 224
              V MPC H+YH NCI KWL+ +N CPLCRFQMPLE E
Sbjct: 184 CGAVGMPCSHIYHRNCIVKWLQQNNLCPLCRFQMPLEME 213

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BLAST of CsaV3_1G007840 vs. TAIR10
Match: AT1G26800.1 (RING/U-box superfamily protein)

HSP 1 Score: 75.1 bits (183), Expect = 6.1e-14
Identity = 36/75 (48.00%), Postives = 47/75 (62.67%), Query Frame = 0


Query: 147 GSGRASRASIQEMERIEIDGVLSDCVICLDEIGSIGCEIDVVQMPCLHVYHLNCIHKWLE 206
           G   AS+ASI  M  +EIDG   +CVICL+E  S   E  V +MPC H +H  CI KWL 
Sbjct: 89  GRPPASKASIDAMPIVEIDGCEGECVICLEEWKS---EETVKEMPCKHRFHGGCIEKWLG 148

Query: 207 LSNRCPLCRFQMPLE 222
               CP+CR++MP++
Sbjct: 149 FHGSCPVCRYEMPVD 160

[Close]

BLAST of CsaV3_1G007840 vs. TAIR10
Match: AT3G19950.1 (RING/U-box superfamily protein)

HSP 1 Score: 67.8 bits (164), Expect = 9.8e-12
Identity = 31/83 (37.35%), Postives = 51/83 (61.45%), Query Frame = 0


Query: 147 GSGRASRASIQEMERIEI-----DGVLSDCVICLDEI--GSIGCEIDVVQMPCLHVYHLN 206
           G+  AS+++I  +  +++        ++ C +C+DE   GS     DV QMPC HV+H +
Sbjct: 187 GTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGS-----DVKQMPCKHVFHQD 246

Query: 207 CIHKWLELSNRCPLCRFQMPLEE 223
           C+  WLEL N CP+CRF++P ++
Sbjct: 247 CLLPWLELHNSCPVCRFELPTDD 264

[Close]

BLAST of CsaV3_1G007840 vs. TAIR10
Match: AT1G55530.1 (RING/U-box superfamily protein)

HSP 1 Score: 63.5 bits (153), Expect = 1.9e-10
Identity = 34/99 (34.34%), Postives = 57/99 (57.58%), Query Frame = 0


Query: 125 ELILPEDAMED-SGYGSEPHMGIGSGRASRASIQEMERIEIDGVLSDCVICLDEIGSIGC 184
           E++L   A  D + YG+ P        A + +++ +  ++I+  L  C +CLD+   IG 
Sbjct: 185 EMLLQRLAENDPNRYGTPP--------AKKEAVEALATVKIEETL-QCSVCLDDF-EIGT 244

Query: 185 EIDVVQMPCLHVYHLNCIHKWLELSNRCPLCRFQMPLEE 223
           E  +  MPC H +H +C+  WLEL + CP+CR+Q+P +E
Sbjct: 245 EAKL--MPCTHKFHSDCLLPWLELHSSCPVCRYQLPADE 271

[Close]

BLAST of CsaV3_1G007840 vs. TAIR10
Match: AT5G59550.1 (zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 63.5 bits (153), Expect = 1.9e-10
Identity = 28/79 (35.44%), Postives = 49/79 (62.03%), Query Frame = 0


Query: 147 GSGRASRASIQEMERIEID----GVLSDCVICLDEIGSIGCEIDVVQMPCLHVYHLNCIH 206
           G+  AS+++I+ + R+EI     G  ++C +C +   +   E +  +MPC H++H +CI 
Sbjct: 171 GNPPASKSAIESLPRVEISDCHIGSEANCAVCTEIFET---ETEAREMPCKHLFHDDCIV 230

Query: 207 KWLELSNRCPLCRFQMPLE 222
            WL + N CP+CRF++P E
Sbjct: 231 PWLSIRNSCPVCRFELPSE 246

[Close]

BLAST of CsaV3_1G007840 vs. TAIR10
Match: AT3G13430.1 (RING/U-box superfamily protein)

HSP 1 Score: 62.4 bits (150), Expect = 4.1e-10
Identity = 26/77 (33.77%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 147 GSGRASRASIQEMERIEIDGVLSDCVICLDEIGSIGCEIDVVQMPCLHVYHLNCIHKWLE 206
           G+  A++ +++ +  ++I+  L  C +CLD+   IG E    +MPC H +H +C+  WLE
Sbjct: 201 GTPPATKEAVEALAMVKIEDSLLQCSVCLDDF-EIGME--AKEMPCKHKFHSDCLLPWLE 260

Query: 207 LSNRCPLCRFQMPLEEE 224
           L + CP+CR+ +P  ++
Sbjct: 261 LHSSCPVCRYLLPTGDD 274

[Close]

BLAST of CsaV3_1G007840 vs. Swiss-Prot
Match: sp|Q9LQX2|MPSR1_ARATH (E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis thaliana OX=3702 GN=MPSR1 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-12
Identity = 36/75 (48.00%), Postives = 47/75 (62.67%), Query Frame = 0


Query: 147 GSGRASRASIQEMERIEIDGVLSDCVICLDEIGSIGCEIDVVQMPCLHVYHLNCIHKWLE 206
           G   AS+ASI  M  +EIDG   +CVICL+E  S   E  V +MPC H +H  CI KWL 
Sbjct: 89  GRPPASKASIDAMPIVEIDGCEGECVICLEEWKS---EETVKEMPCKHRFHGGCIEKWLG 148

Query: 207 LSNRCPLCRFQMPLE 222
               CP+CR++MP++
Sbjct: 149 FHGSCPVCRYEMPVD 160

[Close]

BLAST of CsaV3_1G007840 vs. Swiss-Prot
Match: sp|Q8LPN7|RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.8e-10
Identity = 31/83 (37.35%), Postives = 51/83 (61.45%), Query Frame = 0


Query: 147 GSGRASRASIQEMERIEI-----DGVLSDCVICLDEI--GSIGCEIDVVQMPCLHVYHLN 206
           G+  AS+++I  +  +++        ++ C +C+DE   GS     DV QMPC HV+H +
Sbjct: 187 GTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGS-----DVKQMPCKHVFHQD 246

Query: 207 CIHKWLELSNRCPLCRFQMPLEE 223
           C+  WLEL N CP+CRF++P ++
Sbjct: 247 CLLPWLELHNSCPVCRFELPTDD 264

[Close]

BLAST of CsaV3_1G007840 vs. Swiss-Prot
Match: sp|Q6AVN2|SIRP1_ORYSJ (E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.9e-10
Identity = 32/78 (41.03%), Postives = 50/78 (64.10%), Query Frame = 0


Query: 147 GSGRASRASIQEMERIEIDGVLSDCVICLD--EIGSIGCEIDVVQMPCLHVYHLNCIHKW 206
           G+  A + +++ +  ++I+ V+S C +CLD  E+GS        QMPC H +H +CI  W
Sbjct: 176 GTPPAKKEAVEALPTVKIEEVVS-CSVCLDDLEVGS-----QAKQMPCEHKFHSSCILPW 235

Query: 207 LELSNRCPLCRFQMPLEE 223
           LEL + CP+CRF++P EE
Sbjct: 236 LELHSSCPVCRFELPSEE 247

[Close]

BLAST of CsaV3_1G007840 vs. Swiss-Prot
Match: sp|Q940T5|RDUF2_ARATH (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.3e-09
Identity = 28/79 (35.44%), Postives = 49/79 (62.03%), Query Frame = 0


Query: 147 GSGRASRASIQEMERIEID----GVLSDCVICLDEIGSIGCEIDVVQMPCLHVYHLNCIH 206
           G+  AS+++I+ + R+EI     G  ++C +C +   +   E +  +MPC H++H +CI 
Sbjct: 171 GNPPASKSAIESLPRVEISDCHIGSEANCAVCTEIFET---ETEAREMPCKHLFHDDCIV 230

Query: 207 KWLELSNRCPLCRFQMPLE 222
            WL + N CP+CRF++P E
Sbjct: 231 PWLSIRNSCPVCRFELPSE 246

[Close]

BLAST of CsaV3_1G007840 vs. Swiss-Prot
Match: sp|Q9CY62|RN181_MOUSE (E3 ubiquitin-protein ligase RNF181 OS=Mus musculus OX=10090 GN=Rnf181 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.4e-09
Identity = 28/75 (37.33%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 151 ASRASIQEMERIEIDGVLSD--CVICLDEIGSIGCEIDVVQMPCLHVYHLNCIHKWLELS 210
           A++A ++ + R  I    +D  C +CL E  +   E  V++MPC H++H NCI  WL  +
Sbjct: 66  AAKAVVESLPRTVISSAKADLKCPVCLLEFEA---EETVIEMPCHHLFHSNCILPWLSKT 125

Query: 211 NRCPLCRFQMPLEEE 224
           N CPLCR ++P +++
Sbjct: 126 NSCPLCRHELPTDDD 137

[Close]

BLAST of CsaV3_1G007840 vs. TrEMBL
Match: tr|A0A0A0LR28|A0A0A0LR28_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045460 PE=4 SV=1)

HSP 1 Score: 460.3 bits (1183), Expect = 2.5e-126
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MSTPAISGLHCEVWQPQDFSEPSCSSSSSSSQFQPPEFFIDFYVSSYATHGDEVISTLRY 60
           MSTPAISGLHCEVWQPQDFSEPSCSSSSSSSQFQPPEFFIDFYVSSYATHGDEVISTLRY
Sbjct: 1   MSTPAISGLHCEVWQPQDFSEPSCSSSSSSSQFQPPEFFIDFYVSSYATHGDEVISTLRY 60

Query: 61  KNFRQRCDVLTQDSFSWSAISSMLSETNVPYHLQPFFIHQISTRARGIATEPINALSRTI 120
           KNFRQRCDVLTQDSFSWSAISSMLSETNVPYHLQPFFIHQISTRARGIATEPINALSRTI
Sbjct: 61  KNFRQRCDVLTQDSFSWSAISSMLSETNVPYHLQPFFIHQISTRARGIATEPINALSRTI 120

Query: 121 PMVVELILPEDAMEDSGYGSEPHMGIGSGRASRASIQEMERIEIDGVLSDCVICLDEIGS 180
           PMVVELILPEDAMEDSGYGSEPHMGIGSGRASRASIQEMERIEIDGVLSDCVICLDEIGS
Sbjct: 121 PMVVELILPEDAMEDSGYGSEPHMGIGSGRASRASIQEMERIEIDGVLSDCVICLDEIGS 180

Query: 181 IGCEIDVVQMPCLHVYHLNCIHKWLELSNRCPLCRFQMPLEEE 224
           IGCEIDVVQMPCLHVYHLNCIHKWLELSNRCPLCRFQMPLEEE
Sbjct: 181 IGCEIDVVQMPCLHVYHLNCIHKWLELSNRCPLCRFQMPLEEE 223

[Close]

BLAST of CsaV3_1G007840 vs. TrEMBL
Match: tr|A0A1S3AU71|A0A1S3AU71_CUCME (uncharacterized protein LOC103482872 OS=Cucumis melo OX=3656 GN=LOC103482872 PE=4 SV=1)

HSP 1 Score: 436.8 bits (1122), Expect = 2.9e-119
Identity = 213/219 (97.26%), Postives = 215/219 (98.17%), Query Frame = 0


Query: 5   AISGLHCEVWQPQDFSEPSCSSSSSSSQFQPPEFFIDFYVSSYATHGDEVISTLRYKNFR 64
           AISGLHCEVWQPQDFSEPSC SSSSSSQFQPPEFFIDFYVSSYATHGDEVISTLRYKNFR
Sbjct: 6   AISGLHCEVWQPQDFSEPSC-SSSSSSQFQPPEFFIDFYVSSYATHGDEVISTLRYKNFR 65

Query: 65  QRCDVLTQDSFSWSAISSMLSETNVPYHLQPFFIHQISTRARGIATEPINALSRTIPMVV 124
           QRCDVLTQDSFSWSAISSMLSETNVPYHLQPFFIHQIS RARGIATEPINALSRTIPMVV
Sbjct: 66  QRCDVLTQDSFSWSAISSMLSETNVPYHLQPFFIHQISIRARGIATEPINALSRTIPMVV 125

Query: 125 ELILPEDAMEDSGYGSEPHMGIGSGRASRASIQEMERIEIDGVLSDCVICLDEIGSIGCE 184
           EL+LPEDAME SGYGSEPHMGIGSGRASRASIQEMERIEIDGVLSDCVICLDEIGSIGCE
Sbjct: 126 ELMLPEDAMEGSGYGSEPHMGIGSGRASRASIQEMERIEIDGVLSDCVICLDEIGSIGCE 185

Query: 185 IDVVQMPCLHVYHLNCIHKWLELSNRCPLCRFQMPLEEE 224
           ID V+MPCLHVYHLNCIHKWLELSNRCPLCRFQMPLEEE
Sbjct: 186 IDAVRMPCLHVYHLNCIHKWLELSNRCPLCRFQMPLEEE 223

[Close]

BLAST of CsaV3_1G007840 vs. TrEMBL
Match: tr|A0A251PAL6|A0A251PAL6_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G189000 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 5.7e-38
Identity = 94/216 (43.52%), Postives = 132/216 (61.11%), Query Frame = 0


Query: 11  CEVWQPQDFSEPSCSSSSSSSQFQPPEFFIDFYVSSYATHGDEVI--STLRYKNFRQRCD 70
           CEVWQ ++F EP   +   S   + PEF I+ + S        ++  STL +  F+++C 
Sbjct: 10  CEVWQSENF-EPGEENFLYS---RKPEFLIEIFASFTREEDYPLVPRSTLHFHKFKEQCH 69

Query: 71  VLTQDSFSWSAISSMLSETNVPYHLQPFFIHQISTRARGIATEPINALSRTIPMVVELIL 130
           +LT+   SWS IS+ML++  VPYH+QPF IH ISTRAR IA EP NA   TIP++V L +
Sbjct: 70  LLTESRTSWSVISNMLTQILVPYHVQPFMIHTISTRAREIAGEPENANRNTIPILVSLTV 129

Query: 131 -PEDAMEDSGYGSEPHMGIGSGRASRASIQEMERIEIDGVLSDCVICLDEI--GSIGCEI 190
             E  +ED          +   RA +++I E+E+++++G    CVICL+EI  GS     
Sbjct: 130 GQEPFLEDQDEPEISDHVLQLVRARKSAIDELEKVKVEGCAKPCVICLEEIVNGS----- 189

Query: 191 DVVQMPCLHVYHLNCIHKWLELSNRCPLCRFQMPLE 222
           +  +MPC HVYH +CI  WLE S+ CPLCRF+MP E
Sbjct: 190 EATRMPCFHVYHESCIVNWLEKSHLCPLCRFEMPAE 216

[Close]

BLAST of CsaV3_1G007840 vs. TrEMBL
Match: tr|A0A2P6P2H6|A0A2P6P2H6_ROSCH (Putative aminoacyltransferase, E1 ubiquitin-activating enzyme OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0180831 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.6e-35
Identity = 92/213 (43.19%), Postives = 123/213 (57.75%), Query Frame = 0


Query: 11  CEVWQPQDFSEPSCSSSSSSSQFQPPEFFIDFYVSSYATHGDEVISTLRYKNFRQRCDVL 70
           CEVWQP++        +SS+     PEF I+ Y S        +  +L Y+ F  RC +L
Sbjct: 5   CEVWQPENPEIDQLYDTSSAE----PEFLIELYAS--------IDESLHYEKFNARCHLL 64

Query: 71  TQDSFSWSAISSMLSETNVPYHLQPFFIHQISTRARGIATEPINALSRTIPMVVELILPE 130
           T    SWS IS MLS+  VPYH+QP  I +IST A  IA +P N   +TIPMVV L +P+
Sbjct: 65  TDSRTSWSVISIMLSQVGVPYHVQPIMIQKISTDAHQIANDPGNMYLKTIPMVVSLRVPQ 124

Query: 131 DAMEDSGYGSEPHMGIGSGRASRASIQEM--ERIEIDGVLSDCVICLDEIGSIGCEIDVV 190
           D + +      P   I     S+++I+EM   R++I+G    C++CLDEI  IG E    
Sbjct: 125 DGLPEF-----PVHEIRFVPTSKSAIEEMLDSRVKIEGCEEQCMVCLDEI-LIGGE--AT 184

Query: 191 QMPCLHVYHLNCIHKWLELSNRCPLCRFQMPLE 222
            MPC HV+H +CI  WL+ SN CPLCRF+MP E
Sbjct: 185 CMPCSHVFHESCIVNWLQKSNLCPLCRFEMPAE 197

[Close]

BLAST of CsaV3_1G007840 vs. TrEMBL
Match: tr|M5WCF0|M5WCF0_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa016054mg PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.0e-34
Identity = 80/169 (47.34%), Postives = 110/169 (65.09%), Query Frame = 0


Query: 56  STLRYKNFRQRCDVLTQDSFSWSAISSMLSETNVPYHLQPFFIHQISTRARGIATEPINA 115
           STL +  F+++C +LT+   SWS IS+ML++  VPYH+QPF IH ISTRAR IA EP NA
Sbjct: 39  STLHFHKFKEQCHLLTESRTSWSVISNMLTQILVPYHVQPFMIHTISTRAREIAGEPENA 98

Query: 116 LSRTIPMVVELIL-PEDAMEDSGYGSEPHMGIGSGRASRASIQEMERIEIDGVLSDCVIC 175
              TIP++V L +  E  +ED          +   RA +++I E+E+++++G    CVIC
Sbjct: 99  NRNTIPILVSLTVGQEPFLEDQDEPEISDHVLQLVRARKSAIDELEKVKVEGCAKPCVIC 158

Query: 176 LDEI--GSIGCEIDVVQMPCLHVYHLNCIHKWLELSNRCPLCRFQMPLE 222
           L+EI  GS     +  +MPC HVYH +CI  WLE S+ CPLCRF+MP E
Sbjct: 159 LEEIVNGS-----EATRMPCFHVYHESCIVNWLEKSHLCPLCRFEMPAE 202

The following BLAST results are available for this feature:

BLAST of CsaV3_1G007840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152533.1	3.7e-126	100.00	PREDICTED: LON peptidase N-terminal domain and RING finger protein 2-like [Cucum...	[more]
XP_008437461.1	4.4e-119	97.26	PREDICTED: uncharacterized protein LOC103482872 [Cucumis melo]	[more]
XP_023519803.1	4.9e-102	83.56	RING-H2 finger protein ATL77-like [Cucurbita pepo subsp. pepo]	[more]
XP_023001523.1	9.3e-101	82.65	uncharacterized protein LOC111495638 [Cucurbita maxima]	[more]
XP_022137468.1	3.2e-69	64.38	E3 ubiquitin-protein ligase CIP8-like [Momordica charantia]	[more]

BLAST of CsaV3_1G007840 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G26800.1	6.1e-14	48.00	RING/U-box superfamily protein	[more]
AT3G19950.1	9.8e-12	37.35	RING/U-box superfamily protein	[more]
AT1G55530.1	1.9e-10	34.34	RING/U-box superfamily protein	[more]
AT5G59550.1	1.9e-10	35.44	zinc finger (C3HC4-type RING finger) family protein	[more]
AT3G13430.1	4.1e-10	33.77	RING/U-box superfamily protein	[more]

BLAST of CsaV3_1G007840 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LQX2\|MPSR1_ARATH	1.1e-12	48.00	E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis thaliana OX=3702 GN=MPSR1 PE=1 ...	[more]
sp\|Q8LPN7\|RNG1L_ARATH	1.8e-10	37.35	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
sp\|Q6AVN2\|SIRP1_ORYSJ	3.9e-10	41.03	E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SI...	[more]
sp\|Q940T5\|RDUF2_ARATH	3.3e-09	35.44	E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 ...	[more]
sp\|Q9CY62\|RN181_MOUSE	4.4e-09	37.33	E3 ubiquitin-protein ligase RNF181 OS=Mus musculus OX=10090 GN=Rnf181 PE=1 SV=1	[more]

BLAST of CsaV3_1G007840 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LR28\|A0A0A0LR28_CUCSA	2.5e-126	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045460 PE=4 SV=1	[more]
tr\|A0A1S3AU71\|A0A1S3AU71_CUCME	2.9e-119	97.26	uncharacterized protein LOC103482872 OS=Cucumis melo OX=3656 GN=LOC103482872 PE=...	[more]
tr\|A0A251PAL6\|A0A251PAL6_PRUPE	5.7e-38	43.52	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G189000 PE=4 SV=1	[more]
tr\|A0A2P6P2H6\|A0A2P6P2H6_ROSCH	2.6e-35	43.19	Putative aminoacyltransferase, E1 ubiquitin-activating enzyme OS=Rosa chinensis ...	[more]
tr\|M5WCF0\|M5WCF0_PRUPE	1.0e-34	47.34	Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa016054m...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G007840.1	CsaV3_1G007840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 171..214 e-value: 2.1E-6 score: 37.3
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 170..215 e-value: 8.7E-11 score: 41.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 171..215 score: 12.268
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 144..220 e-value: 1.3E-15 score: 58.8
None	No IPR available	PANTHER	PTHR45491	FAMILY NOT NAMED	coord: 149..223
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 170..219

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G007840	CSPI01G07880	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G007840	Cucsa.097860	Cucumber (Gy14) v1	cgycucB109
CsaV3_1G007840	CmaCh13G009350	Cucurbita maxima (Rimu)	cmacucB0248
CsaV3_1G007840	CmoCh13G009650	Cucurbita moschata (Rifu)	cmocucB0234
CsaV3_1G007840	Carg07724	Silver-seed gourd	carcucB1048
CsaV3_1G007840	Cla008349	Watermelon (97103) v1	cucwmB048
CsaV3_1G007840	MELO3C002199	Melon (DHL92) v3.5.1	cucmeB024
CsaV3_1G007840	ClCG01G014470	Watermelon (Charleston Gray)	cucwcgB023
CsaV3_1G007840	Lsi02G003050	Bottle gourd (USVL1VR-Ls)	cuclsiB022
CsaV3_1G007840	MELO3C002199.2	Melon (DHL92) v3.6.1	cucmedB022
CsaV3_1G007840	Cla97C01G013500	Watermelon (97103) v2	cucwmbB009
CsaV3_1G007840	Cla97C09G179590	Watermelon (97103) v2	cucwmbB089
CsaV3_1G007840	Bhi08G001157	Wax gourd	cucwgoB031

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CsaV3_1G007840	CsaV3_5G038090	Cucumber (Chinese Long) v3	cuccucB041

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G007840	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G007840	Cucurbita maxima (Rimu)	cmacucB0464
CsaV3_1G007840	Cucurbita moschata (Rifu)	cmocucB0457
CsaV3_1G007840	Cucurbita pepo (Zucchini)	cpecucB0031
CsaV3_1G007840	Cucurbita pepo (Zucchini)	cpecucB0623
CsaV3_1G007840	Silver-seed gourd	carcucB0529