CmaCh13G009350 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh13G009350
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRING/U-box superfamily protein, putative
LocationCma_Chr13 : 7401884 .. 7402561 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCACCGCCGCCGCCGCCGCCGCCGTCTCCGGCCTCCACTGCGAGGTTTGGCAGCCCCAAGACTTCTCTGAAACTCATTGTTCTTTTTCTTCTTCTTCTTCTGAATCCCCTGAGTTCTTCATCGATTTCTATGTCTCCTCATATGCAACTCAAGGCGACCAAATCATCAGCACTCTTCGTTACAAGAATTTCAGGCAAAGATGTGACGTTTTAACTCAAGATTCCTTCTCTTGGTCCGCAATTTCCACTATGCTATCCGAAACCAATGTGCCTTACCATCTTCAACCCTTTTTCATTCAGCAGATTTCCATTAGCGCCCGCGGAATTGCAACCGAACCCACTAACGCTCTCTCCCGCACCATTCCCATGGTCGTCGAGCTGGTGCTGCCTGAGGAGGCCATGGAGGACTCGAGTTATGGGTCGGACACCATTATGGGAACTGGGTCGCGCCGGGCGAGTAGAGCTTCGATTCAGGAAATGGAGAGAGTTGAAATGAATGGGGCTTTGAGTGATTGTGTGATTTGTTTGGATGATATCGTTTCAGTTGGGTCTGAAATTGATGCACTTCGAATGCCTTGTTTACATATTTACCATCGAAATTGTATTCACAAATGGCTGCAACTCAGCAACCGCTGCCCCTTGTGTCGGTTTCAGATGCCATTGGAAGAGGAATGA

mRNA sequence

ATGTCCACCGCCGCCGCCGCCGCCGCCGTCTCCGGCCTCCACTGCGAGGTTTGGCAGCCCCAAGACTTCTCTGAAACTCATTGTTCTTTTTCTTCTTCTTCTTCTGAATCCCCTGAGTTCTTCATCGATTTCTATGTCTCCTCATATGCAACTCAAGGCGACCAAATCATCAGCACTCTTCGTTACAAGAATTTCAGGCAAAGATGTGACGTTTTAACTCAAGATTCCTTCTCTTGGTCCGCAATTTCCACTATGCTATCCGAAACCAATGTGCCTTACCATCTTCAACCCTTTTTCATTCAGCAGATTTCCATTAGCGCCCGCGGAATTGCAACCGAACCCACTAACGCTCTCTCCCGCACCATTCCCATGGTCGTCGAGCTGGTGCTGCCTGAGGAGGCCATGGAGGACTCGAGTTATGGGTCGGACACCATTATGGGAACTGGGTCGCGCCGGGCGAGTAGAGCTTCGATTCAGGAAATGGAGAGAGTTGAAATGAATGGGGCTTTGAGTGATTGTGTGATTTGTTTGGATGATATCGTTTCAGTTGGGTCTGAAATTGATGCACTTCGAATGCCTTGTTTACATATTTACCATCGAAATTGTATTCACAAATGGCTGCAACTCAGCAACCGCTGCCCCTTGTGTCGGTTTCAGATGCCATTGGAAGAGGAATGA

Coding sequence (CDS)

ATGTCCACCGCCGCCGCCGCCGCCGCCGTCTCCGGCCTCCACTGCGAGGTTTGGCAGCCCCAAGACTTCTCTGAAACTCATTGTTCTTTTTCTTCTTCTTCTTCTGAATCCCCTGAGTTCTTCATCGATTTCTATGTCTCCTCATATGCAACTCAAGGCGACCAAATCATCAGCACTCTTCGTTACAAGAATTTCAGGCAAAGATGTGACGTTTTAACTCAAGATTCCTTCTCTTGGTCCGCAATTTCCACTATGCTATCCGAAACCAATGTGCCTTACCATCTTCAACCCTTTTTCATTCAGCAGATTTCCATTAGCGCCCGCGGAATTGCAACCGAACCCACTAACGCTCTCTCCCGCACCATTCCCATGGTCGTCGAGCTGGTGCTGCCTGAGGAGGCCATGGAGGACTCGAGTTATGGGTCGGACACCATTATGGGAACTGGGTCGCGCCGGGCGAGTAGAGCTTCGATTCAGGAAATGGAGAGAGTTGAAATGAATGGGGCTTTGAGTGATTGTGTGATTTGTTTGGATGATATCGTTTCAGTTGGGTCTGAAATTGATGCACTTCGAATGCCTTGTTTACATATTTACCATCGAAATTGTATTCACAAATGGCTGCAACTCAGCAACCGCTGCCCCTTGTGTCGGTTTCAGATGCCATTGGAAGAGGAATGA

Protein sequence

MSTAAAAAAVSGLHCEVWQPQDFSETHCSFSSSSSESPEFFIDFYVSSYATQGDQIISTLRYKNFRQRCDVLTQDSFSWSAISTMLSETNVPYHLQPFFIQQISISARGIATEPTNALSRTIPMVVELVLPEEAMEDSSYGSDTIMGTGSRRASRASIQEMERVEMNGALSDCVICLDDIVSVGSEIDALRMPCLHIYHRNCIHKWLQLSNRCPLCRFQMPLEEE
Homology
[Close]
BLAST of CmaCh13G009350 vs. Swiss-Prot
Match: RDUF2_ARATH (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.1e-10
Identity = 29/80 (36.25%), Postives = 52/80 (65.00%), Query Frame = 1 

Query: 148 TGSRRASRASIQEMERVEMN----GALSDCVICLDDIVSVGSEIDALRMPCLHIYHRNCI 207
           +G+  AS+++I+ + RVE++    G+ ++C +C +   +   E +A  MPC H++H +CI
Sbjct: 170 SGNPPASKSAIESLPRVEISDCHIGSEANCAVCTEIFET---ETEAREMPCKHLFHDDCI 229

Query: 208 HKWLQLSNRCPLCRFQMPLE 224
             WL + N CP+CRF++P E
Sbjct: 230 VPWLSIRNSCPVCRFELPSE 246

[Close]
BLAST of CmaCh13G009350 vs. Swiss-Prot
Match: RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.1e-10
Identity = 29/81 (35.80%), Postives = 51/81 (62.96%), Query Frame = 1 

Query: 149 GSRRASRASIQEMERVE-----MNGALSDCVICLDDIVSVGSEIDALRMPCLHIYHRNCI 208
           G+  AS+++I+ +  V      +N   + C +C+DD    G+E  A +MPC H+YH++C+
Sbjct: 195 GTPPASKSAIEALPLVNITKSNLNSEFNQCAVCMDDFEE-GTE--AKQMPCKHLYHKDCL 254

Query: 209 HKWLQLSNRCPLCRFQMPLEE 225
             WL+L N CP+CR ++P ++
Sbjct: 255 LPWLELHNSCPVCRHELPTDD 272

[Close]
BLAST of CmaCh13G009350 vs. Swiss-Prot
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.9e-09
Identity = 26/81 (32.10%), Postives = 52/81 (64.20%), Query Frame = 1 

Query: 149 GSRRASRASIQEMERVE-----MNGALSDCVICLDDIVSVGSEIDALRMPCLHIYHRNCI 208
           G+  AS+++I  +  V+     +   ++ C +C+D+    GS++   +MPC H++H++C+
Sbjct: 187 GTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFED-GSDVK--QMPCKHVFHQDCL 246

Query: 209 HKWLQLSNRCPLCRFQMPLEE 225
             WL+L N CP+CRF++P ++
Sbjct: 247 LPWLELHNSCPVCRFELPTDD 264

[Close]
BLAST of CmaCh13G009350 vs. Swiss-Prot
Match: RDUF1_ARATH (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana GN=RDUF1 PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.6e-09
Identity = 29/78 (37.18%), Postives = 50/78 (64.10%), Query Frame = 1 

Query: 148 TGSRRASRASIQEMERVEMNG----ALSDCVICLDDIVSVGSEIDALRMPCLHIYHRNCI 207
           +G+  AS+++I+ + RVE++     A ++C +C + +   G  I+   MPC HI+H +CI
Sbjct: 186 SGNPPASKSAIESLPRVEISDCHTKAEANCAVCTE-VFEAG--IEGREMPCKHIFHGDCI 245

Query: 208 HKWLQLSNRCPLCRFQMP 222
             WL + N CP+CRF++P
Sbjct: 246 VPWLSIRNSCPVCRFELP 260

[Close]
BLAST of CmaCh13G009350 vs. Swiss-Prot
Match: RN181_BOVIN (E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.3e-08
Identity = 25/75 (33.33%), Postives = 46/75 (61.33%), Query Frame = 1 

Query: 153 ASRASIQEMERVEMNGALSD--CVICLDDIVSVGSEIDALRMPCLHIYHRNCIHKWLQLS 212
           A++ +++ + R  + G+ ++  C +CL   +    E  A+ MPC H++H NCI  WL  +
Sbjct: 54  AAKTAVENLPRTVIRGSQAELKCPVCL---LEFEEEETAIEMPCHHLFHSNCILPWLSKT 113

Query: 213 NRCPLCRFQMPLEEE 226
           N CPLCR ++P +++
Sbjct: 114 NSCPLCRHELPTDDD 125

[Close]
BLAST of CmaCh13G009350 vs. TrEMBL
Match: A0A0A0LR28_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G045460 PE=4 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 1.3e-100
Identity = 181/219 (82.65%), Postives = 198/219 (90.41%), Query Frame = 1 

Query: 9   AVSGLHCEVWQPQDFSETHCSFSSSSSE--SPEFFIDFYVSSYATQGDQIISTLRYKNFR 68
           A+SGLHCEVWQPQDFSE  CS SSSSS+   PEFFIDFYVSSYAT GD++ISTLRYKNFR
Sbjct: 5   AISGLHCEVWQPQDFSEPSCSSSSSSSQFQPPEFFIDFYVSSYATHGDEVISTLRYKNFR 64

Query: 69  QRCDVLTQDSFSWSAISTMLSETNVPYHLQPFFIQQISISARGIATEPTNALSRTIPMVV 128
           QRCDVLTQDSFSWSAIS+MLSETNVPYHLQPFFI QIS  ARGIATEP NALSRTIPMVV
Sbjct: 65  QRCDVLTQDSFSWSAISSMLSETNVPYHLQPFFIHQISTRARGIATEPINALSRTIPMVV 124

Query: 129 ELVLPEEAMEDSSYGSDTIMGTGSRRASRASIQEMERVEMNGALSDCVICLDDIVSVGSE 188
           EL+LPE+AMEDS YGS+  MG GS RASRASIQEMER+E++G LSDCVICLD+I S+G E
Sbjct: 125 ELILPEDAMEDSGYGSEPHMGIGSGRASRASIQEMERIEIDGVLSDCVICLDEIGSIGCE 184

Query: 189 IDALRMPCLHIYHRNCIHKWLQLSNRCPLCRFQMPLEEE 226
           ID ++MPCLH+YH NCIHKWL+LSNRCPLCRFQMPLEEE
Sbjct: 185 IDVVQMPCLHVYHLNCIHKWLELSNRCPLCRFQMPLEEE 223

[Close]
BLAST of CmaCh13G009350 vs. TrEMBL
Match: A0A059CZC5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B00460 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 9.3e-35
Identity = 98/224 (43.75%), Postives = 128/224 (57.14%), Query Frame = 1 

Query: 15  CEVWQPQDFSETHCSFSSSSSESPEFFIDFYVSS-YATQGDQI--------ISTLRYKNF 74
           CE WQPQD          + S+  EF I+ Y +  Y   G           IS   YK F
Sbjct: 6   CEAWQPQDSVP-----EETLSQRDEFLIEIYANFVYVRMGSDDADSSSNPHISPTTYKPF 65

Query: 75  RQRCDVLTQDSFSWSAISTMLSETNVPYHLQPFFIQQISISARGIATEPTNALSRTIPMV 134
           R   D L +D+ SWS IS+MLS+ NVPYH+QP  I++I  +AR IA    N   RT+PMV
Sbjct: 66  RHSRDHLIRDATSWSTISSMLSQVNVPYHVQPLMIRKIHEAARSIANASVNKDLRTLPMV 125

Query: 135 VEL----VLPEEAMEDSSYGSD--TIMGTGSRRASRASIQEMERVEMNGALSD-CVICLD 194
           V +     +P E +      ++  ++  +GS  AS +SIQ +E+V++ G   + CVICLD
Sbjct: 126 VSIRVVQEVPGETLPVPEVQAELMSVHASGSGAASWSSIQALEKVKVGGGSEEKCVICLD 185

Query: 195 DIVSVGSEIDALRMPCLHIYHRNCIHKWLQLSNRCPLCRFQMPL 223
            I+ VGSE  A+RMPCLH YH  CI  WLQ SN CPLCRF MP+
Sbjct: 186 RIM-VGSE--AVRMPCLHNYHEECIVNWLQRSNLCPLCRFPMPM 221

[Close]
BLAST of CmaCh13G009350 vs. TrEMBL
Match: M5WCF0_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016054mg PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.1e-34
Identity = 80/169 (47.34%), Postives = 111/169 (65.68%), Query Frame = 1 

Query: 58  STLRYKNFRQRCDVLTQDSFSWSAISTMLSETNVPYHLQPFFIQQISISARGIATEPTNA 117
           STL +  F+++C +LT+   SWS IS ML++  VPYH+QPF I  IS  AR IA EP NA
Sbjct: 39  STLHFHKFKEQCHLLTESRTSWSVISNMLTQILVPYHVQPFMIHTISTRAREIAGEPENA 98

Query: 118 LSRTIPMVVELVLPEEAM---EDSSYGSDTIMGTGSRRASRASIQEMERVEMNGALSDCV 177
              TIP++V L + +E     +D    SD ++     RA +++I E+E+V++ G    CV
Sbjct: 99  NRNTIPILVSLTVGQEPFLEDQDEPEISDHVLQL--VRARKSAIDELEKVKVEGCAKPCV 158

Query: 178 ICLDDIVSVGSEIDALRMPCLHIYHRNCIHKWLQLSNRCPLCRFQMPLE 224
           ICL++IV+ GSE  A RMPC H+YH +CI  WL+ S+ CPLCRF+MP E
Sbjct: 159 ICLEEIVN-GSE--ATRMPCFHVYHESCIVNWLEKSHLCPLCRFEMPAE 202

[Close]
BLAST of CmaCh13G009350 vs. TrEMBL
Match: M1DK31_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400039868 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.8e-20
Identity = 72/219 (32.88%), Postives = 111/219 (50.68%), Query Frame = 1 

Query: 22  DFSETHCSFS-SSSSESP----EFFIDFYVSSYATQGDQ----------IISTLRYKNFR 81
           D+ + H   S  +SS  P    +FFI F V     Q D+          + S ++   F+
Sbjct: 7   DYCDAHQDESLDTSSVEPTSYDQFFIKFEVEFLREQEDEDEDEELNVSRLESIIKIGIFQ 66

Query: 82  QRCDVLTQDSFSWSAISTMLSETNVPYHLQPFFIQQISISARGIATEPTNALSRTIPMVV 141
           +RCD L  ++ SW  ++ ML    VP H QP  ++QI   A  IA E  N   + +PM V
Sbjct: 67  ERCDRLPHNNLSWHNVTRMLHIMEVPVHRQPMILRQICTFADRIANETYNRNKKILPMKV 126

Query: 142 ELVLPEEAMEDSSYGSDTIMGTGSRRASRASIQEMERVEMN----GALSDCVICLDDIVS 201
            + LP +   + +  SD  +    R A+    + +E+V++     G+   CVIC++  + 
Sbjct: 127 YISLPVDYFIEENENSDEEI----RPANELVEENLEKVKIEETELGSDFVCVICMEK-ME 186

Query: 202 VGSEIDALRMPCLHIYHRNCIHKWLQLSNRCPLCRFQMP 222
           VGSE  A +MPC H+YH NC+  WL +   CP CRF++P
Sbjct: 187 VGSE--ATKMPCSHVYHENCLMNWLGVKRVCPTCRFELP 218

[Close]
BLAST of CmaCh13G009350 vs. TrEMBL
Match: A0A061FXJ9_THECC (Zinc finger protein, putative OS=Theobroma cacao GN=TCM_013884 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.9e-19
Identity = 72/212 (33.96%), Postives = 110/212 (51.89%), Query Frame = 1 

Query: 19  QPQDFSETHCSFSSSSSESPEFFIDFYVSSYATQGDQIISTLRYKNFRQRCDVLTQDSFS 78
           + +D    H      SS  P F I+ + ++  +    I+  L     +     L Q   S
Sbjct: 28  EAEDGEHDHLMQLEDSSPFPVFSIEIF-ANIVSHEPTIMQQLLVPQGQ-----LMQSRTS 87

Query: 79  WSAISTMLSETNVPYHLQPFFIQQISISARGIATEPTNALSRTIPMVVEL----VLPEEA 138
           WSAIS+ LS+ +VP+ L     Q+I   AR  A E  N   + IP+VV L    ++ EEA
Sbjct: 88  WSAISSKLSQMHVPFSLHATVTQKIIECARSAANEVHNKNRKNIPIVVTLCPVRLMEEEA 147

Query: 139 M---EDSSYGSDTIMGTGSRRASRASIQEMERVEMNGALSDCVICLDDIVSVGSEIDALR 198
           +    ++S  S  +     R AS+ +I+ +E+V++ G    CVICL++I+     + A  
Sbjct: 148 LLSEHEASAESFDVQVFRLRGASKGAIEALEKVKVEGFTGQCVICLEEILD---GMKACG 207

Query: 199 MPCLHIYHRNCIHKWLQLSNRCPLCRFQMPLE 224
           MPC H+YH +CI  WL+ SN CPLCRF+  L+
Sbjct: 208 MPCSHVYHHDCIVSWLEKSNVCPLCRFRCLLD 230

[Close]
BLAST of CmaCh13G009350 vs. TAIR10
Match: AT1G26800.1 (AT1G26800.1 RING/U-box superfamily protein)

HSP 1 Score: 69.3 bits (168), Expect = 3.4e-12
Identity = 33/75 (44.00%), Postives = 45/75 (60.00%), Query Frame = 1 

Query: 149 GSRRASRASIQEMERVEMNGALSDCVICLDDIVSVGSEIDALRMPCLHIYHRNCIHKWLQ 208
           G   AS+ASI  M  VE++G   +CVICL++  S   E     MPC H +H  CI KWL 
Sbjct: 89  GRPPASKASIDAMPIVEIDGCEGECVICLEEWKS---EETVKEMPCKHRFHGGCIEKWLG 148

Query: 209 LSNRCPLCRFQMPLE 224
               CP+CR++MP++
Sbjct: 149 FHGSCPVCRYEMPVD 160

[Close]
BLAST of CmaCh13G009350 vs. TAIR10
Match: AT5G59550.1 (AT5G59550.1 zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 66.2 bits (160), Expect = 2.9e-11
Identity = 29/80 (36.25%), Postives = 52/80 (65.00%), Query Frame = 1 

Query: 148 TGSRRASRASIQEMERVEMN----GALSDCVICLDDIVSVGSEIDALRMPCLHIYHRNCI 207
           +G+  AS+++I+ + RVE++    G+ ++C +C +   +   E +A  MPC H++H +CI
Sbjct: 170 SGNPPASKSAIESLPRVEISDCHIGSEANCAVCTEIFET---ETEAREMPCKHLFHDDCI 229

Query: 208 HKWLQLSNRCPLCRFQMPLE 224
             WL + N CP+CRF++P E
Sbjct: 230 VPWLSIRNSCPVCRFELPSE 246

[Close]
BLAST of CmaCh13G009350 vs. TAIR10
Match: AT1G60360.1 (AT1G60360.1 RING/U-box superfamily protein)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-10
Identity = 29/79 (36.71%), Postives = 46/79 (58.23%), Query Frame = 1 

Query: 149 GSRRASRASIQEMERVE-----MNGALSDCVICLDDIVSVGSEIDALRMPCLHIYHRNCI 208
           G   AS  +I  +  V+     +   +S C +C+++ +  G   DA  +PC HIYH++CI
Sbjct: 195 GPPPASEPTINSLPSVKITPQHLTNDMSQCTVCMEEFIVGG---DATELPCKHIYHKDCI 254

Query: 209 HKWLQLSNRCPLCRFQMPL 223
             WL+L+N CP+CR  +PL
Sbjct: 255 VPWLRLNNSCPICRRDLPL 270

[Close]
BLAST of CmaCh13G009350 vs. TAIR10
Match: AT3G19950.1 (AT3G19950.1 RING/U-box superfamily protein)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-10
Identity = 26/81 (32.10%), Postives = 52/81 (64.20%), Query Frame = 1 

Query: 149 GSRRASRASIQEMERVE-----MNGALSDCVICLDDIVSVGSEIDALRMPCLHIYHRNCI 208
           G+  AS+++I  +  V+     +   ++ C +C+D+    GS++   +MPC H++H++C+
Sbjct: 187 GTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFED-GSDVK--QMPCKHVFHQDCL 246

Query: 209 HKWLQLSNRCPLCRFQMPLEE 225
             WL+L N CP+CRF++P ++
Sbjct: 247 LPWLELHNSCPVCRFELPTDD 264

[Close]
BLAST of CmaCh13G009350 vs. TAIR10
Match: AT3G15740.1 (AT3G15740.1 RING/U-box superfamily protein)

HSP 1 Score: 63.2 bits (152), Expect = 2.4e-10
Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = 1 

Query: 173 CVICLDDIVSVGSEIDALRMPCLHIYHRNCIHKWLQLSNRCPLCRFQMP 222
           CVIC+D+I  VGS+++A RMPC H++HR C  +WL+ S  CP+CR   P
Sbjct: 176 CVICMDNI-RVGSDVEAGRMPCSHVFHRTCGEEWLRNSGICPVCRALFP 223

[Close]
BLAST of CmaCh13G009350 vs. NCBI nr
Match: gi|659067058|ref|XP_008437461.1| (PREDICTED: uncharacterized protein LOC103482872 [Cucumis melo])

HSP 1 Score: 378.3 bits (970), Expect = 9.7e-102
Identity = 185/222 (83.33%), Postives = 202/222 (90.99%), Query Frame = 1 

Query: 5   AAAAAVSGLHCEVWQPQDFSETHCSFSSSSS-ESPEFFIDFYVSSYATQGDQIISTLRYK 64
           +AAAA+SGLHCEVWQPQDFSE  CS SSSS  + PEFFIDFYVSSYAT GD++ISTLRYK
Sbjct: 2   SAAAAISGLHCEVWQPQDFSEPSCSSSSSSQFQPPEFFIDFYVSSYATHGDEVISTLRYK 61

Query: 65  NFRQRCDVLTQDSFSWSAISTMLSETNVPYHLQPFFIQQISISARGIATEPTNALSRTIP 124
           NFRQRCDVLTQDSFSWSAIS+MLSETNVPYHLQPFFI QISI ARGIATEP NALSRTIP
Sbjct: 62  NFRQRCDVLTQDSFSWSAISSMLSETNVPYHLQPFFIHQISIRARGIATEPINALSRTIP 121

Query: 125 MVVELVLPEEAMEDSSYGSDTIMGTGSRRASRASIQEMERVEMNGALSDCVICLDDIVSV 184
           MVVEL+LPE+AME S YGS+  MG GS RASRASIQEMER+E++G LSDCVICLD+I S+
Sbjct: 122 MVVELMLPEDAMEGSGYGSEPHMGIGSGRASRASIQEMERIEIDGVLSDCVICLDEIGSI 181

Query: 185 GSEIDALRMPCLHIYHRNCIHKWLQLSNRCPLCRFQMPLEEE 226
           G EIDA+RMPCLH+YH NCIHKWL+LSNRCPLCRFQMPLEEE
Sbjct: 182 GCEIDAVRMPCLHVYHLNCIHKWLELSNRCPLCRFQMPLEEE 223

[Close]
BLAST of CmaCh13G009350 vs. NCBI nr
Match: gi|449469653|ref|XP_004152533.1| (PREDICTED: LON peptidase N-terminal domain and RING finger protein 2-like [Cucumis sativus])

HSP 1 Score: 374.0 bits (959), Expect = 1.8e-100
Identity = 181/219 (82.65%), Postives = 198/219 (90.41%), Query Frame = 1 

Query: 9   AVSGLHCEVWQPQDFSETHCSFSSSSSE--SPEFFIDFYVSSYATQGDQIISTLRYKNFR 68
           A+SGLHCEVWQPQDFSE  CS SSSSS+   PEFFIDFYVSSYAT GD++ISTLRYKNFR
Sbjct: 5   AISGLHCEVWQPQDFSEPSCSSSSSSSQFQPPEFFIDFYVSSYATHGDEVISTLRYKNFR 64

Query: 69  QRCDVLTQDSFSWSAISTMLSETNVPYHLQPFFIQQISISARGIATEPTNALSRTIPMVV 128
           QRCDVLTQDSFSWSAIS+MLSETNVPYHLQPFFI QIS  ARGIATEP NALSRTIPMVV
Sbjct: 65  QRCDVLTQDSFSWSAISSMLSETNVPYHLQPFFIHQISTRARGIATEPINALSRTIPMVV 124

Query: 129 ELVLPEEAMEDSSYGSDTIMGTGSRRASRASIQEMERVEMNGALSDCVICLDDIVSVGSE 188
           EL+LPE+AMEDS YGS+  MG GS RASRASIQEMER+E++G LSDCVICLD+I S+G E
Sbjct: 125 ELILPEDAMEDSGYGSEPHMGIGSGRASRASIQEMERIEIDGVLSDCVICLDEIGSIGCE 184

Query: 189 IDALRMPCLHIYHRNCIHKWLQLSNRCPLCRFQMPLEEE 226
           ID ++MPCLH+YH NCIHKWL+LSNRCPLCRFQMPLEEE
Sbjct: 185 IDVVQMPCLHVYHLNCIHKWLELSNRCPLCRFQMPLEEE 223

[Close]
BLAST of CmaCh13G009350 vs. NCBI nr
Match: gi|645269135|ref|XP_008239859.1| (PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Prunus mume])

HSP 1 Score: 168.3 bits (425), Expect = 1.5e-38
Identity = 93/214 (43.46%), Postives = 132/214 (61.68%), Query Frame = 1 

Query: 15  CEVWQPQDFSETHCSFSSSSSESPEFFIDFYVSSYATQGDQII--STLRYKNFRQRCDVL 74
           CEVWQ ++F      F  S    PEF I+ + S    +   ++  STL +  F+++C +L
Sbjct: 10  CEVWQSENFEPGEEDFLYS--RKPEFLIEIFASFTREEDYPLVPRSTLHFHKFKEQCHLL 69

Query: 75  TQDSFSWSAISTMLSETNVPYHLQPFFIQQISISARGIATEPTNALSRTIPMVVELVLPE 134
           T+   SWS IS ML++  VPYH+QPF I  IS  AR IA EP NA    IP++V L + +
Sbjct: 70  TESRTSWSVISNMLTQILVPYHVQPFMIHTISTRAREIAGEPENANRNIIPILVSLTVGQ 129

Query: 135 EAM---EDSSYGSDTIMGTGSRRASRASIQEMERVEMNGALSDCVICLDDIVSVGSEIDA 194
           E     +D    SD ++   S RA +++I E+E+V++ G    CVICL++IV+ GSE  A
Sbjct: 130 EPFLEDQDEPEISDHVL--QSVRARKSAIDELEKVKVEGCAKPCVICLEEIVN-GSE--A 189

Query: 195 LRMPCLHIYHRNCIHKWLQLSNRCPLCRFQMPLE 224
            RMPC H+YH +CI  WL+ S+ CPLCRF+MP+E
Sbjct: 190 TRMPCFHVYHESCIGNWLEKSHLCPLCRFEMPVE 216

[Close]
BLAST of CmaCh13G009350 vs. NCBI nr
Match: gi|702281757|ref|XP_010045575.1| (PREDICTED: uncharacterized protein LOC104434326 [Eucalyptus grandis])

HSP 1 Score: 155.2 bits (391), Expect = 1.3e-34
Identity = 98/224 (43.75%), Postives = 128/224 (57.14%), Query Frame = 1 

Query: 15  CEVWQPQDFSETHCSFSSSSSESPEFFIDFYVSS-YATQGDQI--------ISTLRYKNF 74
           CE WQPQD          + S+  EF I+ Y +  Y   G           IS   YK F
Sbjct: 6   CEAWQPQDSVP-----EETLSQRDEFLIEIYANFVYVRMGSDDADSSSNPHISPTTYKPF 65

Query: 75  RQRCDVLTQDSFSWSAISTMLSETNVPYHLQPFFIQQISISARGIATEPTNALSRTIPMV 134
           R   D L +D+ SWS IS+MLS+ NVPYH+QP  I++I  +AR IA    N   RT+PMV
Sbjct: 66  RHSRDHLIRDATSWSTISSMLSQVNVPYHVQPLMIRKIHEAARSIANASVNKDLRTLPMV 125

Query: 135 VEL----VLPEEAMEDSSYGSD--TIMGTGSRRASRASIQEMERVEMNGALSD-CVICLD 194
           V +     +P E +      ++  ++  +GS  AS +SIQ +E+V++ G   + CVICLD
Sbjct: 126 VSIRVVQEVPGETLPVPEVQAELMSVHASGSGAASWSSIQALEKVKVGGGSEEKCVICLD 185

Query: 195 DIVSVGSEIDALRMPCLHIYHRNCIHKWLQLSNRCPLCRFQMPL 223
            I+ VGSE  A+RMPCLH YH  CI  WLQ SN CPLCRF MP+
Sbjct: 186 RIM-VGSE--AVRMPCLHNYHEECIVNWLQRSNLCPLCRFPMPM 221

[Close]
BLAST of CmaCh13G009350 vs. NCBI nr
Match: gi|595851940|ref|XP_007210215.1| (hypothetical protein PRUPE_ppa016054mg, partial [Prunus persica])

HSP 1 Score: 154.1 bits (388), Expect = 3.0e-34
Identity = 80/169 (47.34%), Postives = 111/169 (65.68%), Query Frame = 1 

Query: 58  STLRYKNFRQRCDVLTQDSFSWSAISTMLSETNVPYHLQPFFIQQISISARGIATEPTNA 117
           STL +  F+++C +LT+   SWS IS ML++  VPYH+QPF I  IS  AR IA EP NA
Sbjct: 39  STLHFHKFKEQCHLLTESRTSWSVISNMLTQILVPYHVQPFMIHTISTRAREIAGEPENA 98

Query: 118 LSRTIPMVVELVLPEEAM---EDSSYGSDTIMGTGSRRASRASIQEMERVEMNGALSDCV 177
              TIP++V L + +E     +D    SD ++     RA +++I E+E+V++ G    CV
Sbjct: 99  NRNTIPILVSLTVGQEPFLEDQDEPEISDHVLQL--VRARKSAIDELEKVKVEGCAKPCV 158

Query: 178 ICLDDIVSVGSEIDALRMPCLHIYHRNCIHKWLQLSNRCPLCRFQMPLE 224
           ICL++IV+ GSE  A RMPC H+YH +CI  WL+ S+ CPLCRF+MP E
Sbjct: 159 ICLEEIVN-GSE--ATRMPCFHVYHESCIVNWLEKSHLCPLCRFEMPAE 202

The following BLAST results are available for this feature:
BLAST of CmaCh13G009350 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RDUF2_ARATH5.1e-1036.25E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1[more]
RING1_GOSHI5.1e-1035.80E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1[more]
RNG1L_ARATH1.9e-0932.10E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1... [more]
RDUF1_ARATH5.6e-0937.18E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana GN=RDUF1 PE=1 SV=1[more]
RN181_BOVIN1.3e-0833.33E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2 SV=1[more]
BLAST of CmaCh13G009350 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LR28_CUCSA1.3e-10082.65Uncharacterized protein OS=Cucumis sativus GN=Csa_1G045460 PE=4 SV=1[more]
A0A059CZC5_EUCGR9.3e-3543.75Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B00460 PE=4 SV=1[more]
M5WCF0_PRUPE2.1e-3447.34Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016054mg PE=4 S... [more]
M1DK31_SOLTU3.8e-2032.88Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400039868 PE=4 SV=1[more]
A0A061FXJ9_THECC1.9e-1933.96Zinc finger protein, putative OS=Theobroma cacao GN=TCM_013884 PE=4 SV=1[more]
BLAST of CmaCh13G009350 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G26800.13.4e-1244.00 RING/U-box superfamily protein[more]
AT5G59550.12.9e-1136.25 zinc finger (C3HC4-type RING finger) family protein[more]
AT1G60360.11.1e-1036.71 RING/U-box superfamily protein[more]
AT3G19950.11.1e-1032.10 RING/U-box superfamily protein[more]
AT3G15740.12.4e-1053.06 RING/U-box superfamily protein[more]
BLAST of CmaCh13G009350 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659067058|ref|XP_008437461.1|9.7e-10283.33PREDICTED: uncharacterized protein LOC103482872 [Cucumis melo][more]
gi|449469653|ref|XP_004152533.1|1.8e-10082.65PREDICTED: LON peptidase N-terminal domain and RING finger protein 2-like [Cucum... [more]
gi|645269135|ref|XP_008239859.1|1.5e-3843.46PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Prunus mume][more]
gi|702281757|ref|XP_010045575.1|1.3e-3443.75PREDICTED: uncharacterized protein LOC104434326 [Eucalyptus grandis][more]
gi|595851940|ref|XP_007210215.1|3.0e-3447.34hypothetical protein PRUPE_ppa016054mg, partial [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR011016Znf_RING-CH
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh13G009350.1CmaCh13G009350.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 172..217
score: 4.6
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 173..216
score: 2.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 173..217
score: 12
IPR011016Zinc finger, RING-CH-typeSMARTSM00744ringv_2coord: 172..217
score: 0
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 171..218
score: 6.2
NoneNo IPR availablePANTHERPTHR22763RING ZINC FINGER PROTEINcoord: 89..225
score: 6.5E-20coord: 26..45
score: 6.5
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 172..221
score: 5.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh13G009350Cucsa.097860Cucumber (Gy14) v1cgycmaB0210
CmaCh13G009350Cla008349Watermelon (97103) v1cmawmB200
CmaCh13G009350Csa1G045460Cucumber (Chinese Long) v2cmacuB217
CmaCh13G009350MELO3C002199Melon (DHL92) v3.5.1cmameB193
CmaCh13G009350ClCG01G014470Watermelon (Charleston Gray)cmawcgB179
CmaCh13G009350CSPI01G07880Wild cucumber (PI 183967)cmacpiB218
CmaCh13G009350CmoCh13G009650Cucurbita moschata (Rifu)cmacmoB218
CmaCh13G009350Lsi02G003050Bottle gourd (USVL1VR-Ls)cmalsiB208
CmaCh13G009350Cp4.1LG20g01870Cucurbita pepo (Zucchini)cmacpeB234
CmaCh13G009350MELO3C002199.2Melon (DHL92) v3.6.1cmamedB214
CmaCh13G009350CsaV3_1G007840Cucumber (Chinese Long) v3cmacucB0248
CmaCh13G009350CsaV3_5G038090Cucumber (Chinese Long) v3cmacucB0262
CmaCh13G009350Cla97C01G013500Watermelon (97103) v2cmawmbB207
CmaCh13G009350Cla97C09G179590Watermelon (97103) v2cmawmbB246
CmaCh13G009350Bhi08G001157Wax gourdcmawgoB0266
CmaCh13G009350Carg02246Silver-seed gourdcarcmaB0359
CmaCh13G009350Carg07724Silver-seed gourdcarcmaB1393
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh13G009350Cucurbita pepo (Zucchini)cmacpeB213
CmaCh13G009350Cucurbita pepo (Zucchini)cmacpeB248
CmaCh13G009350Bottle gourd (USVL1VR-Ls)cmalsiB220
CmaCh13G009350Cucumber (Gy14) v2cgybcmaB073
CmaCh13G009350Melon (DHL92) v3.6.1cmamedB229
CmaCh13G009350Silver-seed gourdcarcmaB0690
CmaCh13G009350Cucumber (Chinese Long) v3cmacucB0239
CmaCh13G009350Watermelon (97103) v2cmawmbB242
CmaCh13G009350Wax gourdcmawgoB0286
CmaCh13G009350Cucurbita maxima (Rimu)cmacmaB130
CmaCh13G009350Cucurbita maxima (Rimu)cmacmaB217
CmaCh13G009350Cucurbita moschata (Rifu)cmacmoB213
CmaCh13G009350Cucurbita moschata (Rifu)cmacmoB224
CmaCh13G009350Wild cucumber (PI 183967)cmacpiB211
CmaCh13G009350Cucumber (Chinese Long) v2cmacuB209
CmaCh13G009350Melon (DHL92) v3.5.1cmameB209
CmaCh13G009350Watermelon (Charleston Gray)cmawcgB210
CmaCh13G009350Watermelon (97103) v1cmawmB216