Carg07724 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg07724
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	E3 ubiquitin-protein ligase rduf1
Location	Cucurbita_argyrosperma_scaffold_024 : 1099688 .. 1100365 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCACCGTCGCCGCCGCCGCCGCCGTTTCCGGCCTCCACTGCGAGGTTTGGCAGCCCCAAGACTTCTCTGAAACTCACTGTTCTTTTTCTTCTTCTTCTTCTGAATCCCCTGAGTTCTTCATCGATTTCTATGTCTCCTCTTATGCAACTCAAGGCGACCAAATCATCAGCACTCTTCGTTACAAGAATTTCAGGCAAAGATGTGACGTTTTAACTCAAGATTCCTTCTCTTGGTCCGCAATTTCCACTATGCTATCCGAAACCAATGTGCCTTACCATCTTCAACCCTTTTTCATTCAGCAGATTTCCATTAGCGCCCGCGGAATTGCAACCGAACCCACTAACGCTCTCTCCCGCACCATTCCCATGGTCGTCGAGCTGGTGCTGCCTGAGGAGGCCATGGAGGATTCGGGTTATGGGTCGGACACCATTATGGGAACTGGGTCGCGCCGGGCGAGTAGAACTTCGATTCAGGAAATGGAGAGAGTTGAAATGAATGGGGTTTTGAGTGATTGTGTGATTTGTTTGGATGATATCGTTTCAGTTGGGTCTGAAATTGATGCACTTCGAATGCCTTGTTTACATATTTACCATCGAAATTGTATTCACAAATGGCTGCAACTCAGCAACCGCTGCCCCTTGTGTCGGTTTCAGATGCCATTGGAAGAGGAATGA

mRNA sequence

ATGTCCACCGTCGCCGCCGCCGCCGCCGTTTCCGGCCTCCACTGCGAGGTTTGGCAGCCCCAAGACTTCTCTGAAACTCACTGTTCTTTTTCTTCTTCTTCTTCTGAATCCCCTGAGTTCTTCATCGATTTCTATGTCTCCTCTTATGCAACTCAAGGCGACCAAATCATCAGCACTCTTCGTTACAAGAATTTCAGGCAAAGATGTGACGTTTTAACTCAAGATTCCTTCTCTTGGTCCGCAATTTCCACTATGCTATCCGAAACCAATGTGCCTTACCATCTTCAACCCTTTTTCATTCAGCAGATTTCCATTAGCGCCCGCGGAATTGCAACCGAACCCACTAACGCTCTCTCCCGCACCATTCCCATGGTCGTCGAGCTGGTGCTGCCTGAGGAGGCCATGGAGGATTCGGGTTATGGGTCGGACACCATTATGGGAACTGGGTCGCGCCGGGCGAGTAGAACTTCGATTCAGGAAATGGAGAGAGTTGAAATGAATGGGGTTTTGAGTGATTGTGTGATTTGTTTGGATGATATCGTTTCAGTTGGGTCTGAAATTGATGCACTTCGAATGCCTTGTTTACATATTTACCATCGAAATTGTATTCACAAATGGCTGCAACTCAGCAACCGCTGCCCCTTGTGTCGGTTTCAGATGCCATTGGAAGAGGAATGA

Coding sequence (CDS)

ATGTCCACCGTCGCCGCCGCCGCCGCCGTTTCCGGCCTCCACTGCGAGGTTTGGCAGCCCCAAGACTTCTCTGAAACTCACTGTTCTTTTTCTTCTTCTTCTTCTGAATCCCCTGAGTTCTTCATCGATTTCTATGTCTCCTCTTATGCAACTCAAGGCGACCAAATCATCAGCACTCTTCGTTACAAGAATTTCAGGCAAAGATGTGACGTTTTAACTCAAGATTCCTTCTCTTGGTCCGCAATTTCCACTATGCTATCCGAAACCAATGTGCCTTACCATCTTCAACCCTTTTTCATTCAGCAGATTTCCATTAGCGCCCGCGGAATTGCAACCGAACCCACTAACGCTCTCTCCCGCACCATTCCCATGGTCGTCGAGCTGGTGCTGCCTGAGGAGGCCATGGAGGATTCGGGTTATGGGTCGGACACCATTATGGGAACTGGGTCGCGCCGGGCGAGTAGAACTTCGATTCAGGAAATGGAGAGAGTTGAAATGAATGGGGTTTTGAGTGATTGTGTGATTTGTTTGGATGATATCGTTTCAGTTGGGTCTGAAATTGATGCACTTCGAATGCCTTGTTTACATATTTACCATCGAAATTGTATTCACAAATGGCTGCAACTCAGCAACCGCTGCCCCTTGTGTCGGTTTCAGATGCCATTGGAAGAGGAATGA

Protein sequence

MSTVAAAAAVSGLHCEVWQPQDFSETHCSFSSSSSESPEFFIDFYVSSYATQGDQIISTLRYKNFRQRCDVLTQDSFSWSAISTMLSETNVPYHLQPFFIQQISISARGIATEPTNALSRTIPMVVELVLPEEAMEDSGYGSDTIMGTGSRRASRTSIQEMERVEMNGVLSDCVICLDDIVSVGSEIDALRMPCLHIYHRNCIHKWLQLSNRCPLCRFQMPLEEE

Homology

[Close]

BLAST of Carg07724 vs. NCBI nr
Match: XP_023519803.1 (RING-H2 finger protein ATL77-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 447.2 bits (1149), Expect = 3.3e-122
Identity = 222/225 (98.67%), Postives = 222/225 (98.67%), Query Frame = 0


Query: 1   MSTVAAAAAVSGLHCEVWQPQDFSETHCSFSSSSSESPEFFIDFYVSSYATQGDQIISTL 60
           MSTVAAAAAVSGLHCEVWQPQD SETHCSFSSSSSE PEFFIDFYVSSYATQGDQIISTL
Sbjct: 1   MSTVAAAAAVSGLHCEVWQPQDLSETHCSFSSSSSEFPEFFIDFYVSSYATQGDQIISTL 60

Query: 61  RYKNFRQRCDVLTQDSFSWSAISTMLSETNVPYHLQPFFIQQISISARGIATEPTNALSR 120
           RYKNFRQRCDVLTQDSFSWSAISTMLSETNVPYHLQPFFIQQISISARGIATEPTNALSR
Sbjct: 61  RYKNFRQRCDVLTQDSFSWSAISTMLSETNVPYHLQPFFIQQISISARGIATEPTNALSR 120

Query: 121 TIPMVVELVLPEEAMEDSGYGSDTIMGTGSRRASRTSIQEMERVEMNGVLSDCVICLDDI 180
           TIPMVVELVLPEEAMEDSGYGSDTIMGTGSRRASR SIQEMERVEMNGVLSDCVICLDDI
Sbjct: 121 TIPMVVELVLPEEAMEDSGYGSDTIMGTGSRRASRASIQEMERVEMNGVLSDCVICLDDI 180

Query: 181 VSVGSEIDALRMPCLHIYHRNCIHKWLQLSNRCPLCRFQMPLEEE 226
           VSVGSEIDALRMPCLHIYHRNCIHKWLQLSNRCPLCRFQMPLEEE
Sbjct: 181 VSVGSEIDALRMPCLHIYHRNCIHKWLQLSNRCPLCRFQMPLEEE 225

[Close]

BLAST of Carg07724 vs. NCBI nr
Match: XP_023001523.1 (uncharacterized protein LOC111495638 [Cucurbita maxima])

HSP 1 Score: 446.4 bits (1147), Expect = 5.6e-122
Identity = 221/225 (98.22%), Postives = 221/225 (98.22%), Query Frame = 0


Query: 1   MSTVAAAAAVSGLHCEVWQPQDFSETHCSFSSSSSESPEFFIDFYVSSYATQGDQIISTL 60
           MST AAAAAVSGLHCEVWQPQDFSETHCSFSSSSSESPEFFIDFYVSSYATQGDQIISTL
Sbjct: 1   MSTAAAAAAVSGLHCEVWQPQDFSETHCSFSSSSSESPEFFIDFYVSSYATQGDQIISTL 60

Query: 61  RYKNFRQRCDVLTQDSFSWSAISTMLSETNVPYHLQPFFIQQISISARGIATEPTNALSR 120
           RYKNFRQRCDVLTQDSFSWSAISTMLSETNVPYHLQPFFIQQISISARGIATEPTNALSR
Sbjct: 61  RYKNFRQRCDVLTQDSFSWSAISTMLSETNVPYHLQPFFIQQISISARGIATEPTNALSR 120

Query: 121 TIPMVVELVLPEEAMEDSGYGSDTIMGTGSRRASRTSIQEMERVEMNGVLSDCVICLDDI 180
           TIPMVVELVLPEEAMEDS YGSDTIMGTGSRRASR SIQEMERVEMNG LSDCVICLDDI
Sbjct: 121 TIPMVVELVLPEEAMEDSSYGSDTIMGTGSRRASRASIQEMERVEMNGALSDCVICLDDI 180

Query: 181 VSVGSEIDALRMPCLHIYHRNCIHKWLQLSNRCPLCRFQMPLEEE 226
           VSVGSEIDALRMPCLHIYHRNCIHKWLQLSNRCPLCRFQMPLEEE
Sbjct: 181 VSVGSEIDALRMPCLHIYHRNCIHKWLQLSNRCPLCRFQMPLEEE 225

[Close]

BLAST of Carg07724 vs. NCBI nr
Match: XP_008437461.1 (PREDICTED: uncharacterized protein LOC103482872 [Cucumis melo])

HSP 1 Score: 382.1 bits (980), Expect = 1.3e-102
Identity = 186/223 (83.41%), Postives = 204/223 (91.48%), Query Frame = 0


Query: 4   VAAAAAVSGLHCEVWQPQDFSETHCSFSSSSS-ESPEFFIDFYVSSYATQGDQIISTLRY 63
           ++AAAA+SGLHCEVWQPQDFSE  CS SSSS  + PEFFIDFYVSSYAT GD++ISTLRY
Sbjct: 1   MSAAAAISGLHCEVWQPQDFSEPSCSSSSSSQFQPPEFFIDFYVSSYATHGDEVISTLRY 60

Query: 64  KNFRQRCDVLTQDSFSWSAISTMLSETNVPYHLQPFFIQQISISARGIATEPTNALSRTI 123
           KNFRQRCDVLTQDSFSWSAIS+MLSETNVPYHLQPFFI QISI ARGIATEP NALSRTI
Sbjct: 61  KNFRQRCDVLTQDSFSWSAISSMLSETNVPYHLQPFFIHQISIRARGIATEPINALSRTI 120

Query: 124 PMVVELVLPEEAMEDSGYGSDTIMGTGSRRASRTSIQEMERVEMNGVLSDCVICLDDIVS 183
           PMVVEL+LPE+AME SGYGS+  MG GS RASR SIQEMER+E++GVLSDCVICLD+I S
Sbjct: 121 PMVVELMLPEDAMEGSGYGSEPHMGIGSGRASRASIQEMERIEIDGVLSDCVICLDEIGS 180

Query: 184 VGSEIDALRMPCLHIYHRNCIHKWLQLSNRCPLCRFQMPLEEE 226
           +G EIDA+RMPCLH+YH NCIHKWL+LSNRCPLCRFQMPLEEE
Sbjct: 181 IGCEIDAVRMPCLHVYHLNCIHKWLELSNRCPLCRFQMPLEEE 223

[Close]

BLAST of Carg07724 vs. NCBI nr
Match: XP_004152533.1 (PREDICTED: LON peptidase N-terminal domain and RING finger protein 2-like [Cucumis sativus] >KGN64248.1 hypothetical protein Csa_1G045460 [Cucumis sativus])

HSP 1 Score: 377.1 bits (967), Expect = 4.2e-101
Identity = 182/219 (83.11%), Postives = 199/219 (90.87%), Query Frame = 0


Query: 9   AVSGLHCEVWQPQDFSETHCSFSSSSS--ESPEFFIDFYVSSYATQGDQIISTLRYKNFR 68
           A+SGLHCEVWQPQDFSE  CS SSSSS  + PEFFIDFYVSSYAT GD++ISTLRYKNFR
Sbjct: 5   AISGLHCEVWQPQDFSEPSCSSSSSSSQFQPPEFFIDFYVSSYATHGDEVISTLRYKNFR 64

Query: 69  QRCDVLTQDSFSWSAISTMLSETNVPYHLQPFFIQQISISARGIATEPTNALSRTIPMVV 128
           QRCDVLTQDSFSWSAIS+MLSETNVPYHLQPFFI QIS  ARGIATEP NALSRTIPMVV
Sbjct: 65  QRCDVLTQDSFSWSAISSMLSETNVPYHLQPFFIHQISTRARGIATEPINALSRTIPMVV 124

Query: 129 ELVLPEEAMEDSGYGSDTIMGTGSRRASRTSIQEMERVEMNGVLSDCVICLDDIVSVGSE 188
           EL+LPE+AMEDSGYGS+  MG GS RASR SIQEMER+E++GVLSDCVICLD+I S+G E
Sbjct: 125 ELILPEDAMEDSGYGSEPHMGIGSGRASRASIQEMERIEIDGVLSDCVICLDEIGSIGCE 184

Query: 189 IDALRMPCLHIYHRNCIHKWLQLSNRCPLCRFQMPLEEE 226
           ID ++MPCLH+YH NCIHKWL+LSNRCPLCRFQMPLEEE
Sbjct: 185 IDVVQMPCLHVYHLNCIHKWLELSNRCPLCRFQMPLEEE 223

[Close]

BLAST of Carg07724 vs. NCBI nr
Match: XP_022923775.1 (E3 ubiquitin-protein ligase SIRP1-like [Cucurbita moschata])

HSP 1 Score: 284.6 bits (727), Expect = 2.8e-73
Identity = 139/141 (98.58%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 85  MLSETNVPYHLQPFFIQQISISARGIATEPTNALSRTIPMVVELVLPEEAMEDSGYGSDT 144
           MLSETNVPYHLQPFFIQQISISARGIATEPTNALSRTIPMVVELVLPEE MEDSGYGSDT
Sbjct: 1   MLSETNVPYHLQPFFIQQISISARGIATEPTNALSRTIPMVVELVLPEEVMEDSGYGSDT 60

Query: 145 IMGTGSRRASRTSIQEMERVEMNGVLSDCVICLDDIVSVGSEIDALRMPCLHIYHRNCIH 204
           IMGTGSRRASR SIQEMERVEMNGVLSDCVICLDDIVSVGSEIDALRMPCLHIYHRNCIH
Sbjct: 61  IMGTGSRRASRASIQEMERVEMNGVLSDCVICLDDIVSVGSEIDALRMPCLHIYHRNCIH 120

Query: 205 KWLQLSNRCPLCRFQMPLEEE 226
           KWLQLSNRCPLCRFQMPLEEE
Sbjct: 121 KWLQLSNRCPLCRFQMPLEEE 141

[Close]

BLAST of Carg07724 vs. TAIR10
Match: AT1G26800.1 (RING/U-box superfamily protein)

HSP 1 Score: 68.2 bits (165), Expect = 7.5e-12
Identity = 32/75 (42.67%), Postives = 44/75 (58.67%), Query Frame = 0


Query: 149 GSRRASRTSIQEMERVEMNGVLSDCVICLDDIVSVGSEIDALRMPCLHIYHRNCIHKWLQ 208
           G   AS+ SI  M  VE++G   +CVICL++     SE     MPC H +H  CI KWL 
Sbjct: 89  GRPPASKASIDAMPIVEIDGCEGECVICLEE---WKSEETVKEMPCKHRFHGGCIEKWLG 148

Query: 209 LSNRCPLCRFQMPLE 224
               CP+CR++MP++
Sbjct: 149 FHGSCPVCRYEMPVD 160

[Close]

BLAST of Carg07724 vs. TAIR10
Match: AT5G59550.1 (zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 65.9 bits (159), Expect = 3.7e-11
Identity = 29/80 (36.25%), Postives = 51/80 (63.75%), Query Frame = 0


Query: 148 TGSRRASRTSIQEMERVEMN----GVLSDCVICLDDIVSVGSEIDALRMPCLHIYHRNCI 207
           +G+  AS+++I+ + RVE++    G  ++C +C +      +E +A  MPC H++H +CI
Sbjct: 170 SGNPPASKSAIESLPRVEISDCHIGSEANCAVCTE---IFETETEAREMPCKHLFHDDCI 229

Query: 208 HKWLQLSNRCPLCRFQMPLE 224
             WL + N CP+CRF++P E
Sbjct: 230 VPWLSIRNSCPVCRFELPSE 246

[Close]

BLAST of Carg07724 vs. TAIR10
Match: AT1G60360.1 (RING/U-box superfamily protein)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-10
Identity = 29/79 (36.71%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 149 GSRRASRTSIQEMERVE-----MNGVLSDCVICLDDIVSVGSEIDALRMPCLHIYHRNCI 208
           G   AS  +I  +  V+     +   +S C +C+++ +  G   DA  +PC HIYH++CI
Sbjct: 195 GPPPASEPTINSLPSVKITPQHLTNDMSQCTVCMEEFIVGG---DATELPCKHIYHKDCI 254

Query: 209 HKWLQLSNRCPLCRFQMPL 223
             WL+L+N CP+CR  +PL
Sbjct: 255 VPWLRLNNSCPICRRDLPL 270

[Close]

BLAST of Carg07724 vs. TAIR10
Match: AT3G19950.1 (RING/U-box superfamily protein)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-10
Identity = 27/81 (33.33%), Postives = 51/81 (62.96%), Query Frame = 0


Query: 149 GSRRASRTSIQEMERVE-----MNGVLSDCVICLDDIVSVGSEIDALRMPCLHIYHRNCI 208
           G+  AS+++I  +  V+     +   ++ C +C+D+    GS  D  +MPC H++H++C+
Sbjct: 187 GTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFED-GS--DVKQMPCKHVFHQDCL 246

Query: 209 HKWLQLSNRCPLCRFQMPLEE 225
             WL+L N CP+CRF++P ++
Sbjct: 247 LPWLELHNSCPVCRFELPTDD 264

[Close]

BLAST of Carg07724 vs. TAIR10
Match: AT3G46620.1 (zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 63.2 bits (152), Expect = 2.4e-10
Identity = 33/91 (36.26%), Postives = 55/91 (60.44%), Query Frame = 0


Query: 135 MEDSGYGSDTIMGTGSRRASRTSIQEMERVEMNG----VLSDCVICLDDIVSVGSEIDAL 194
           +E SG G   I  +G+  AS+++I+ + RVE++       ++C +C  ++   G  I+  
Sbjct: 176 IEASGNG---IGRSGNPPASKSAIESLPRVEISDCHTKAEANCAVC-TEVFEAG--IEGR 235

Query: 195 RMPCLHIYHRNCIHKWLQLSNRCPLCRFQMP 222
            MPC HI+H +CI  WL + N CP+CRF++P
Sbjct: 236 EMPCKHIFHGDCIVPWLSIRNSCPVCRFELP 260

[Close]

BLAST of Carg07724 vs. Swiss-Prot
Match: sp|Q9LQX2|MPSR1_ARATH (E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis thaliana OX=3702 GN=MPSR1 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-10
Identity = 32/75 (42.67%), Postives = 44/75 (58.67%), Query Frame = 0


Query: 149 GSRRASRTSIQEMERVEMNGVLSDCVICLDDIVSVGSEIDALRMPCLHIYHRNCIHKWLQ 208
           G   AS+ SI  M  VE++G   +CVICL++     SE     MPC H +H  CI KWL 
Sbjct: 89  GRPPASKASIDAMPIVEIDGCEGECVICLEE---WKSEETVKEMPCKHRFHGGCIEKWLG 148

Query: 209 LSNRCPLCRFQMPLE 224
               CP+CR++MP++
Sbjct: 149 FHGSCPVCRYEMPVD 160

[Close]

BLAST of Carg07724 vs. Swiss-Prot
Match: sp|Q6AVN2|SIRP1_ORYSJ (E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.8e-10
Identity = 32/76 (42.11%), Postives = 52/76 (68.42%), Query Frame = 0


Query: 149 GSRRASRTSIQEMERVEMNGVLSDCVICLDDIVSVGSEIDALRMPCLHIYHRNCIHKWLQ 208
           G+  A + +++ +  V++  V+S C +CLDD+  VGS+  A +MPC H +H +CI  WL+
Sbjct: 176 GTPPAKKEAVEALPTVKIEEVVS-CSVCLDDL-EVGSQ--AKQMPCEHKFHSSCILPWLE 235

Query: 209 LSNRCPLCRFQMPLEE 225
           L + CP+CRF++P EE
Sbjct: 236 LHSSCPVCRFELPSEE 247

[Close]

BLAST of Carg07724 vs. Swiss-Prot
Match: sp|P0CH30|RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.2e-10
Identity = 29/81 (35.80%), Postives = 51/81 (62.96%), Query Frame = 0


Query: 149 GSRRASRTSIQEMERV-----EMNGVLSDCVICLDDIVSVGSEIDALRMPCLHIYHRNCI 208
           G+  AS+++I+ +  V      +N   + C +C+DD    G+E  A +MPC H+YH++C+
Sbjct: 195 GTPPASKSAIEALPLVNITKSNLNSEFNQCAVCMDDF-EEGTE--AKQMPCKHLYHKDCL 254

Query: 209 HKWLQLSNRCPLCRFQMPLEE 225
             WL+L N CP+CR ++P ++
Sbjct: 255 LPWLELHNSCPVCRHELPTDD 272

[Close]

BLAST of Carg07724 vs. Swiss-Prot
Match: sp|Q940T5|RDUF2_ARATH (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.8e-10
Identity = 29/80 (36.25%), Postives = 51/80 (63.75%), Query Frame = 0


Query: 148 TGSRRASRTSIQEMERVEMN----GVLSDCVICLDDIVSVGSEIDALRMPCLHIYHRNCI 207
           +G+  AS+++I+ + RVE++    G  ++C +C +      +E +A  MPC H++H +CI
Sbjct: 170 SGNPPASKSAIESLPRVEISDCHIGSEANCAVCTE---IFETETEAREMPCKHLFHDDCI 229

Query: 208 HKWLQLSNRCPLCRFQMPLE 224
             WL + N CP+CRF++P E
Sbjct: 230 VPWLSIRNSCPVCRFELPSE 246

[Close]

BLAST of Carg07724 vs. Swiss-Prot
Match: sp|Q8LPN7|RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.0e-09
Identity = 27/81 (33.33%), Postives = 51/81 (62.96%), Query Frame = 0


Query: 149 GSRRASRTSIQEMERVE-----MNGVLSDCVICLDDIVSVGSEIDALRMPCLHIYHRNCI 208
           G+  AS+++I  +  V+     +   ++ C +C+D+    GS  D  +MPC H++H++C+
Sbjct: 187 GTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFED-GS--DVKQMPCKHVFHQDCL 246

Query: 209 HKWLQLSNRCPLCRFQMPLEE 225
             WL+L N CP+CRF++P ++
Sbjct: 247 LPWLELHNSCPVCRFELPTDD 264

[Close]

BLAST of Carg07724 vs. TrEMBL
Match: tr|A0A1S3AU71|A0A1S3AU71_CUCME (uncharacterized protein LOC103482872 OS=Cucumis melo OX=3656 GN=LOC103482872 PE=4 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 8.6e-103
Identity = 186/223 (83.41%), Postives = 204/223 (91.48%), Query Frame = 0


Query: 4   VAAAAAVSGLHCEVWQPQDFSETHCSFSSSSS-ESPEFFIDFYVSSYATQGDQIISTLRY 63
           ++AAAA+SGLHCEVWQPQDFSE  CS SSSS  + PEFFIDFYVSSYAT GD++ISTLRY
Sbjct: 1   MSAAAAISGLHCEVWQPQDFSEPSCSSSSSSQFQPPEFFIDFYVSSYATHGDEVISTLRY 60

Query: 64  KNFRQRCDVLTQDSFSWSAISTMLSETNVPYHLQPFFIQQISISARGIATEPTNALSRTI 123
           KNFRQRCDVLTQDSFSWSAIS+MLSETNVPYHLQPFFI QISI ARGIATEP NALSRTI
Sbjct: 61  KNFRQRCDVLTQDSFSWSAISSMLSETNVPYHLQPFFIHQISIRARGIATEPINALSRTI 120

Query: 124 PMVVELVLPEEAMEDSGYGSDTIMGTGSRRASRTSIQEMERVEMNGVLSDCVICLDDIVS 183
           PMVVEL+LPE+AME SGYGS+  MG GS RASR SIQEMER+E++GVLSDCVICLD+I S
Sbjct: 121 PMVVELMLPEDAMEGSGYGSEPHMGIGSGRASRASIQEMERIEIDGVLSDCVICLDEIGS 180

Query: 184 VGSEIDALRMPCLHIYHRNCIHKWLQLSNRCPLCRFQMPLEEE 226
           +G EIDA+RMPCLH+YH NCIHKWL+LSNRCPLCRFQMPLEEE
Sbjct: 181 IGCEIDAVRMPCLHVYHLNCIHKWLELSNRCPLCRFQMPLEEE 223

[Close]

BLAST of Carg07724 vs. TrEMBL
Match: tr|A0A0A0LR28|A0A0A0LR28_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045460 PE=4 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 2.8e-101
Identity = 182/219 (83.11%), Postives = 199/219 (90.87%), Query Frame = 0


Query: 9   AVSGLHCEVWQPQDFSETHCSFSSSSS--ESPEFFIDFYVSSYATQGDQIISTLRYKNFR 68
           A+SGLHCEVWQPQDFSE  CS SSSSS  + PEFFIDFYVSSYAT GD++ISTLRYKNFR
Sbjct: 5   AISGLHCEVWQPQDFSEPSCSSSSSSSQFQPPEFFIDFYVSSYATHGDEVISTLRYKNFR 64

Query: 69  QRCDVLTQDSFSWSAISTMLSETNVPYHLQPFFIQQISISARGIATEPTNALSRTIPMVV 128
           QRCDVLTQDSFSWSAIS+MLSETNVPYHLQPFFI QIS  ARGIATEP NALSRTIPMVV
Sbjct: 65  QRCDVLTQDSFSWSAISSMLSETNVPYHLQPFFIHQISTRARGIATEPINALSRTIPMVV 124

Query: 129 ELVLPEEAMEDSGYGSDTIMGTGSRRASRTSIQEMERVEMNGVLSDCVICLDDIVSVGSE 188
           EL+LPE+AMEDSGYGS+  MG GS RASR SIQEMER+E++GVLSDCVICLD+I S+G E
Sbjct: 125 ELILPEDAMEDSGYGSEPHMGIGSGRASRASIQEMERIEIDGVLSDCVICLDEIGSIGCE 184

Query: 189 IDALRMPCLHIYHRNCIHKWLQLSNRCPLCRFQMPLEEE 226
           ID ++MPCLH+YH NCIHKWL+LSNRCPLCRFQMPLEEE
Sbjct: 185 IDVVQMPCLHVYHLNCIHKWLELSNRCPLCRFQMPLEEE 223

[Close]

BLAST of Carg07724 vs. TrEMBL
Match: tr|A0A251PAL6|A0A251PAL6_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G189000 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 2.0e-38
Identity = 93/214 (43.46%), Postives = 132/214 (61.68%), Query Frame = 0


Query: 15  CEVWQPQDFSETHCSFSSSSSESPEFFIDFYVSSYATQGDQII--STLRYKNFRQRCDVL 74
           CEVWQ ++F     +F    S  PEF I+ + S    +   ++  STL +  F+++C +L
Sbjct: 10  CEVWQSENFEPGEENF--LYSRKPEFLIEIFASFTREEDYPLVPRSTLHFHKFKEQCHLL 69

Query: 75  TQDSFSWSAISTMLSETNVPYHLQPFFIQQISISARGIATEPTNALSRTIPMVVELVLPE 134
           T+   SWS IS ML++  VPYH+QPF I  IS  AR IA EP NA   TIP++V L + +
Sbjct: 70  TESRTSWSVISNMLTQILVPYHVQPFMIHTISTRAREIAGEPENANRNTIPILVSLTVGQ 129

Query: 135 EAM---EDSGYGSDTIMGTGSRRASRTSIQEMERVEMNGVLSDCVICLDDIVSVGSEIDA 194
           E     +D    SD ++     RA +++I E+E+V++ G    CVICL++IV+ GSE  A
Sbjct: 130 EPFLEDQDEPEISDHVLQL--VRARKSAIDELEKVKVEGCAKPCVICLEEIVN-GSE--A 189

Query: 195 LRMPCLHIYHRNCIHKWLQLSNRCPLCRFQMPLE 224
            RMPC H+YH +CI  WL+ S+ CPLCRF+MP E
Sbjct: 190 TRMPCFHVYHESCIVNWLEKSHLCPLCRFEMPAE 216

[Close]

BLAST of Carg07724 vs. TrEMBL
Match: tr|A0A2P6P2H6|A0A2P6P2H6_ROSCH (Putative aminoacyltransferase, E1 ubiquitin-activating enzyme OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0180831 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 6.3e-37
Identity = 91/211 (43.13%), Postives = 126/211 (59.72%), Query Frame = 0


Query: 15  CEVWQPQDFSETHCSFSSSSSESPEFFIDFYVSSYATQGDQIISTLRYKNFRQRCDVLTQ 74
           CEVWQP++  E    + +SS+E PEF I+ Y S        I  +L Y+ F  RC +LT 
Sbjct: 5   CEVWQPEN-PEIDQLYDTSSAE-PEFLIELYAS--------IDESLHYEKFNARCHLLTD 64

Query: 75  DSFSWSAISTMLSETNVPYHLQPFFIQQISISARGIATEPTNALSRTIPMVVELVLPEEA 134
              SWS IS MLS+  VPYH+QP  IQ+IS  A  IA +P N   +TIPMVV L +P++ 
Sbjct: 65  SRTSWSVISIMLSQVGVPYHVQPIMIQKISTDAHQIANDPGNMYLKTIPMVVSLRVPQDG 124

Query: 135 MEDSGYGSDTIMGTGSRRASRTSIQEM--ERVEMNGVLSDCVICLDDIVSVGSEIDALRM 194
           + +        + T     S+++I+EM   RV++ G    C++CLD+I+  G   +A  M
Sbjct: 125 LPEFPVHEIRFVPT-----SKSAIEEMLDSRVKIEGCEEQCMVCLDEILIGG---EATCM 184

Query: 195 PCLHIYHRNCIHKWLQLSNRCPLCRFQMPLE 224
           PC H++H +CI  WLQ SN CPLCRF+MP E
Sbjct: 185 PCSHVFHESCIVNWLQKSNLCPLCRFEMPAE 197

[Close]

BLAST of Carg07724 vs. TrEMBL
Match: tr|A0A059CZC5|A0A059CZC5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B00460 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.8e-34
Identity = 98/224 (43.75%), Postives = 129/224 (57.59%), Query Frame = 0


Query: 15  CEVWQPQDFSETHCSFSSSSSESPEFFIDFYVS-SYATQG--------DQIISTLRYKNF 74
           CE WQPQD          + S+  EF I+ Y +  Y   G        +  IS   YK F
Sbjct: 6   CEAWQPQDSVP-----EETLSQRDEFLIEIYANFVYVRMGSDDADSSSNPHISPTTYKPF 65

Query: 75  RQRCDVLTQDSFSWSAISTMLSETNVPYHLQPFFIQQISISARGIATEPTNALSRTIPMV 134
           R   D L +D+ SWS IS+MLS+ NVPYH+QP  I++I  +AR IA    N   RT+PMV
Sbjct: 66  RHSRDHLIRDATSWSTISSMLSQVNVPYHVQPLMIRKIHEAARSIANASVNKDLRTLPMV 125

Query: 135 VEL----VLPEEAMEDSGYGSD--TIMGTGSRRASRTSIQEMERVEMNGVLSD-CVICLD 194
           V +     +P E +      ++  ++  +GS  AS +SIQ +E+V++ G   + CVICLD
Sbjct: 126 VSIRVVQEVPGETLPVPEVQAELMSVHASGSGAASWSSIQALEKVKVGGGSEEKCVICLD 185

Query: 195 DIVSVGSEIDALRMPCLHIYHRNCIHKWLQLSNRCPLCRFQMPL 223
            I+ VGSE  A+RMPCLH YH  CI  WLQ SN CPLCRF MP+
Sbjct: 186 RIM-VGSE--AVRMPCLHNYHEECIVNWLQRSNLCPLCRFPMPM 221

The following BLAST results are available for this feature:

BLAST of Carg07724 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023519803.1	3.3e-122	98.67	RING-H2 finger protein ATL77-like [Cucurbita pepo subsp. pepo]	[more]
XP_023001523.1	5.6e-122	98.22	uncharacterized protein LOC111495638 [Cucurbita maxima]	[more]
XP_008437461.1	1.3e-102	83.41	PREDICTED: uncharacterized protein LOC103482872 [Cucumis melo]	[more]
XP_004152533.1	4.2e-101	83.11	PREDICTED: LON peptidase N-terminal domain and RING finger protein 2-like [Cucum...	[more]
XP_022923775.1	2.8e-73	98.58	E3 ubiquitin-protein ligase SIRP1-like [Cucurbita moschata]	[more]

BLAST of Carg07724 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G26800.1	7.5e-12	42.67	RING/U-box superfamily protein	[more]
AT5G59550.1	3.7e-11	36.25	zinc finger (C3HC4-type RING finger) family protein	[more]
AT1G60360.1	1.1e-10	36.71	RING/U-box superfamily protein	[more]
AT3G19950.1	1.1e-10	33.33	RING/U-box superfamily protein	[more]
AT3G46620.1	2.4e-10	36.26	zinc finger (C3HC4-type RING finger) family protein	[more]

BLAST of Carg07724 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LQX2\|MPSR1_ARATH	1.4e-10	42.67	E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis thaliana OX=3702 GN=MPSR1 PE=1 ...	[more]
sp\|Q6AVN2\|SIRP1_ORYSJ	1.8e-10	42.11	E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SI...	[more]
sp\|P0CH30\|RING1_GOSHI	5.2e-10	35.80	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV...	[more]
sp\|Q940T5\|RDUF2_ARATH	6.8e-10	36.25	E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 ...	[more]
sp\|Q8LPN7\|RNG1L_ARATH	2.0e-09	33.33	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]

BLAST of Carg07724 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AU71\|A0A1S3AU71_CUCME	8.6e-103	83.41	uncharacterized protein LOC103482872 OS=Cucumis melo OX=3656 GN=LOC103482872 PE=...	[more]
tr\|A0A0A0LR28\|A0A0A0LR28_CUCSA	2.8e-101	83.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045460 PE=4 SV=1	[more]
tr\|A0A251PAL6\|A0A251PAL6_PRUPE	2.0e-38	43.46	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G189000 PE=4 SV=1	[more]
tr\|A0A2P6P2H6\|A0A2P6P2H6_ROSCH	6.3e-37	43.13	Putative aminoacyltransferase, E1 ubiquitin-activating enzyme OS=Rosa chinensis ...	[more]
tr\|A0A059CZC5\|A0A059CZC5_EUCGR	3.8e-34	43.75	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B00460 PE=4 SV...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING
IPR011016	Znf_RING-CH

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07724-RA	Carg07724-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 172..217 e-value: 0.003 score: 11.7
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 173..216 e-value: 2.2E-7 score: 40.5
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 172..217 e-value: 6.5E-12 score: 45.5
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 173..217 score: 12.416
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 142..222 e-value: 2.3E-16 score: 61.2
None	No IPR available	PANTHER	PTHR45491	FAMILY NOT NAMED	coord: 148..225
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 172..221

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg07724	Cla008349	Watermelon (97103) v1	carwmB1006
Carg07724	Csa1G045460	Cucumber (Chinese Long) v2	carcuB1019
Carg07724	MELO3C002199	Melon (DHL92) v3.5.1	carmeB0976
Carg07724	ClCG01G014470	Watermelon (Charleston Gray)	carwcgB0977
Carg07724	CSPI01G07880	Wild cucumber (PI 183967)	carcpiB1043
Carg07724	Cucsa.097860	Cucumber (Gy14) v1	carcgyB1120
Carg07724	CmaCh13G009350	Cucurbita maxima (Rimu)	carcmaB1393
Carg07724	CmoCh13G009650	Cucurbita moschata (Rifu)	carcmoB1349
Carg07724	Lsi02G003050	Bottle gourd (USVL1VR-Ls)	carlsiB919
Carg07724	Cp4.1LG20g01870	Cucurbita pepo (Zucchini)	carcpeB1401
Carg07724	MELO3C002199.2	Melon (DHL92) v3.6.1	carmedB0986
Carg07724	CsaV3_1G007840	Cucumber (Chinese Long) v3	carcucB1048
Carg07724	Cla97C01G013500	Watermelon (97103) v2	carwmbB1057
Carg07724	Cla97C09G179590	Watermelon (97103) v2	carwmbB1065
Carg07724	Bhi08G001157	Wax gourd	carwgoB1181

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg07724	Carg02246	Silver-seed gourd	carcarB312

The following block(s) are covering this gene:


Gene	Organism	Block
Carg07724	Silver-seed gourd	carcarB482
Carg07724	Cucumber (Gy14) v2	carcgybB0991
Carg07724	Cucurbita maxima (Rimu)	carcmaB1396
Carg07724	Cucurbita moschata (Rifu)	carcmoB1351
Carg07724	Cucurbita pepo (Zucchini)	carcpeB1394