CsaV3_1G005030 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G005030
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 3345802 .. 3346176 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACAAATACCCAAATCTCATTACTCAATATGCGGAAACGGTTACGGCGGAGCTGAAGAAATGGGAAAGATTGGATGAGGGATTCGATTTGGGAGAGAAATCTTGGGGCGTAATTATTTTTAAAGAGATCGTGGAACGAAAAAAGGCAAATAAAAAGGCGAAGTCAGCGCCGGTGATAATCCGGAAGCCACCATTCCGCCGCCCTCCGCCACAGAGTGAGTCCCGTACGTCCCCCTAATCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTAATTCAAAAAATTGTAACCGAAAGCCAATGTAATTTCCATTTCAGGCACCAGGGAAATCCATCATTCAAAATTCAAAAAAGATAATATTGAAATGGAAGAATAA

mRNA sequence

ATGCACAAATACCCAAATCTCATTACTCAATATGCGGAAACGGTTACGGCGGAGCTGAAGAAATGGGAAAGATTGGATGAGGGATTCGATTTGGGAGAGAAATCTTGGGGCGTAATTATTTTTAAAGAGATCGTGGAACGAAAAAAGGCAAATAAAAAGGCGAAGTCAGCGCCGGTGATAATCCGGAAGCCACCATTCCGCCGCCCTCCGCCACAGAGTGAGTCCCGCACCAGGGAAATCCATCATTCAAAATTCAAAAAAGATAATATTGAAATGGAAGAATAA

Coding sequence (CDS)

ATGCACAAATACCCAAATCTCATTACTCAATATGCGGAAACGGTTACGGCGGAGCTGAAGAAATGGGAAAGATTGGATGAGGGATTCGATTTGGGAGAGAAATCTTGGGGCGTAATTATTTTTAAAGAGATCGTGGAACGAAAAAAGGCAAATAAAAAGGCGAAGTCAGCGCCGGTGATAATCCGGAAGCCACCATTCCGCCGCCCTCCGCCACAGAGTGAGTCCCGCACCAGGGAAATCCATCATTCAAAATTCAAAAAAGATAATATTGAAATGGAAGAATAA

Protein sequence

MHKYPNLITQYAETVTAELKKWERLDEGFDLGEKSWGVIIFKEIVERKKANKKAKSAPVIIRKPPFRRPPPQSESRTREIHHSKFKKDNIEMEE
Homology
[Close]
BLAST of CsaV3_1G005030 vs. NCBI nr
Match: KGN63952.1 (hypothetical protein Csa_1G031760 [Cucumis sativus])

HSP 1 Score: 146.7 bits (369), Expect = 3.9e-32
Identity = 72/77 (93.51%), Postives = 72/77 (93.51%), Query Frame = 0 

Query: 1  MHKYPNLITQYAETVTAELKKWERLDEGFDLGEKSWGVIIFKEIVERKKANKKAKSAPVI 60
          MHKYPNLITQYAETVTAELKKWERLDEGFDLGEKSWGVIIFKEIVERKKANKKAKSAPVI
Sbjct: 1  MHKYPNLITQYAETVTAELKKWERLDEGFDLGEKSWGVIIFKEIVERKKANKKAKSAPVI 60

Query: 61 IRKPPFXXXXXQSESRT 78
          IRKPPF     QSESRT
Sbjct: 61 IRKPPFRRPPPQSESRT 77

[Close]
BLAST of CsaV3_1G005030 vs. TrEMBL
Match: tr|A0A0A0LT58|A0A0A0LT58_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G031760 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.6e-32
Identity = 72/77 (93.51%), Postives = 72/77 (93.51%), Query Frame = 0 

Query: 1  MHKYPNLITQYAETVTAELKKWERLDEGFDLGEKSWGVIIFKEIVERKKANKKAKSAPVI 60
          MHKYPNLITQYAETVTAELKKWERLDEGFDLGEKSWGVIIFKEIVERKKANKKAKSAPVI
Sbjct: 1  MHKYPNLITQYAETVTAELKKWERLDEGFDLGEKSWGVIIFKEIVERKKANKKAKSAPVI 60

Query: 61 IRKPPFXXXXXQSESRT 78
          IRKPPF     QSESRT
Sbjct: 61 IRKPPFRRPPPQSESRT 77

The following BLAST results are available for this feature:
BLAST of CsaV3_1G005030 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN63952.13.9e-3293.51hypothetical protein Csa_1G031760 [Cucumis sativus][more]
BLAST of CsaV3_1G005030 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G005030 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G005030 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LT58|A0A0A0LT58_CUCSA2.6e-3293.51Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G031760 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G005030.1CsaV3_1G005030.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..94
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..94

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G005030CSPI01G05130Wild cucumber (PI 183967)cpicucB001
CsaV3_1G005030CsGy1G004910Cucumber (Gy14) v2cgybcucB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G005030Cucumber (Gy14) v1cgycucB143
CsaV3_1G005030Cucurbita maxima (Rimu)cmacucB0237
CsaV3_1G005030Cucurbita maxima (Rimu)cmacucB0513
CsaV3_1G005030Cucurbita moschata (Rifu)cmocucB0224
CsaV3_1G005030Cucurbita moschata (Rifu)cmocucB0501
CsaV3_1G005030Cucurbita pepo (Zucchini)cpecucB0636
CsaV3_1G005030Cucurbita pepo (Zucchini)cpecucB0665
CsaV3_1G005030Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G005030Melon (DHL92) v3.5.1cucmeB024
CsaV3_1G005030Melon (DHL92) v3.6.1cucmedB022
CsaV3_1G005030Watermelon (Charleston Gray)cucwcgB063
CsaV3_1G005030Watermelon (97103) v1cucwmB070
CsaV3_1G005030Watermelon (97103) v2cucwmbB054
CsaV3_1G005030Wax gourdcucwgoB036
CsaV3_1G005030Silver-seed gourdcarcucB0420
CsaV3_1G005030Silver-seed gourdcarcucB0555