MELO3C006905.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C006905.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Remorin
Location	chr06 : 7116141 .. 7116359 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTTGGAAGCAAAGGCTGATTTGGCGAAATTGAGACTGAAAGAGATGGAGAAAGTAAAAAACAAAGAGGCAGAGACTCATAAGGCAGTTGAATCAAAGAAAGCATCCATTGAAGCTAAAAGAGAGCTTAGAAAACTCAAGGTTGAAGAGAGAGCTAAAATGCATAGATGTACCAATACTGTTCCTAAAAAGTGTTTTGGCATTTGCAACGACTGA

mRNA sequence

ATGAATTTGGAAGCAAAGGCTGATTTGGCGAAATTGAGACTGAAAGAGATGGAGAAAGTAAAAAACAAAGAGGCAGAGACTCATAAGGCAGTTGAATCAAAGAAAGCATCCATTGAAGCTAAAAGAGAGCTTAGAAAACTCAAGGTTGAAGAGAGAGCTAAAATGCATAGATGTACCAATACTGTTCCTAAAAAGTGTTTTGGCATTTGCAACGACTGA

Coding sequence (CDS)

ATGAATTTGGAAGCAAAGGCTGATTTGGCGAAATTGAGACTGAAAGAGATGGAGAAAGTAAAAAACAAAGAGGCAGAGACTCATAAGGCAGTTGAATCAAAGAAAGCATCCATTGAAGCTAAAAGAGAGCTTAGAAAACTCAAGGTTGAAGAGAGAGCTAAAATGCATAGATGTACCAATACTGTTCCTAAAAAGTGTTTTGGCATTTGCAACGACTGA

Protein sequence

MNLEAKADLAKLRLKEMEKVKNKEAETHKAVESKKASIEAKRELRKLKVEERAKMHRCTNTVPKKCFGICND

Homology

[Close]

BLAST of MELO3C006905.2 vs. NCBI nr
Match: XP_004140841.1 (PREDICTED: remorin-like [Cucumis sativus] >KGN57373.1 hypothetical protein Csa_3G182090 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 2.4e-10
Identity = 50/66 (75.76%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 7   ADLAKLRLKEMEKVKNKEAETHKAVESKKASXXXXXXXXXXXVEERAKMHRCTNTVPKKC 66
           ADL KLRL+ MEKVKNKEAETHKA       XXXXXXXXXXX     K+HRCTNTVPKKC
Sbjct: 61  ADLVKLRLRGMEKVKNKEAETHKAXXXXXXXXXXXXXXXXXXXXXXXKVHRCTNTVPKKC 120

Query: 67  FGICND 73
           FGICND
Sbjct: 121 FGICND 126

[Close]

BLAST of MELO3C006905.2 vs. NCBI nr
Match: XP_011030105.1 (PREDICTED: uncharacterized protein LOC105129652 isoform X1 [Populus euphratica])

HSP 1 Score: 59.3 bits (142), Expect = 6.2e-06
Identity = 29/70 (41.43%), Postives = 43/70 (61.43%), Query Frame = 0


Query: 3   LEAKADLAKLRLKEMEKVKNKEAETHKAVESKKASXXXXXXXXXXXVEERAKMHRCTNTV 62
           ++ +A+L  +R  + EK+KN+EA+  KA+E KKA+           + E+A  HR  NT+
Sbjct: 207 MKIEAELESIRQHKHEKIKNEEAQMQKAMEQKKAAIDAQNQKKVLEITEKADKHRSNNTL 266

Query: 63  PKKCFGICND 73
           P KCFGIC D
Sbjct: 267 PMKCFGICTD 276

[Close]

BLAST of MELO3C006905.2 vs. NCBI nr
Match: XP_011030107.1 (PREDICTED: transmembrane ascorbate ferrireductase 1-like isoform X3 [Populus euphratica])

HSP 1 Score: 58.9 bits (141), Expect = 8.1e-06
Identity = 29/67 (43.28%), Postives = 41/67 (61.19%), Query Frame = 0


Query: 6   KADLAKLRLKEMEKVKNKEAETHKAVESKKASXXXXXXXXXXXVEERAKMHRCTNTVPKK 65
           +A+L  +R  + EK+KN+EA+  KA+E KKA+           + E+A  HR  NT+P K
Sbjct: 131 QAELESIRQHKHEKIKNEEAQMQKAMEQKKAAIDAQNQKKVLEITEKADKHRSNNTLPMK 190

Query: 66  CFGICND 73
           CFGIC D
Sbjct: 191 CFGICTD 197

[Close]

BLAST of MELO3C006905.2 vs. NCBI nr
Match: XP_024438028.1 (transmembrane ascorbate ferrireductase 1 isoform X3 [Populus trichocarpa])

HSP 1 Score: 58.2 bits (139), Expect = 1.4e-05
Identity = 29/67 (43.28%), Postives = 41/67 (61.19%), Query Frame = 0


Query: 6   KADLAKLRLKEMEKVKNKEAETHKAVESKKASXXXXXXXXXXXVEERAKMHRCTNTVPKK 65
           +A+L  +R  + EK+KN+EA+  KA+E KKA+           + E+A  HR  NT+P K
Sbjct: 131 QAELESIRQHKHEKIKNEEAQIQKAMEQKKAAIDAQNQKKVLEITEKADKHRSNNTLPMK 190

Query: 66  CFGICND 73
           CFGIC D
Sbjct: 191 CFGICAD 197

[Close]

BLAST of MELO3C006905.2 vs. NCBI nr
Match: PNT11038.1 (hypothetical protein POPTR_012G140900v3, partial [Populus trichocarpa])

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-04
Identity = 27/61 (44.26%), Postives = 37/61 (60.66%), Query Frame = 0


Query: 12  LRLKEMEKVKNKEAETHKAVESKKASXXXXXXXXXXXVEERAKMHRCTNTVPKKCFGICN 71
           +R  + EK+KN+EA+  KA+E KKA+           + E+A  HR  NT+P KCFGIC 
Sbjct: 62  IRQHKHEKIKNEEAQIQKAMEQKKAAIDAQNQKKVLEITEKADKHRSNNTLPMKCFGICA 121

Query: 72  D 73
           D
Sbjct: 122 D 122

[Close]

BLAST of MELO3C006905.2 vs. TrEMBL
Match: tr|A0A0A0L6I9|A0A0A0L6I9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G182090 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-10
Identity = 50/66 (75.76%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 7   ADLAKLRLKEMEKVKNKEAETHKAVESKKASXXXXXXXXXXXVEERAKMHRCTNTVPKKC 66
           ADL KLRL+ MEKVKNKEAETHKA       XXXXXXXXXXX     K+HRCTNTVPKKC
Sbjct: 61  ADLVKLRLRGMEKVKNKEAETHKAXXXXXXXXXXXXXXXXXXXXXXXKVHRCTNTVPKKC 120

Query: 67  FGICND 73
           FGICND
Sbjct: 121 FGICND 126

[Close]

BLAST of MELO3C006905.2 vs. TrEMBL
Match: tr|A0A2K1YDD2|A0A2K1YDD2_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa OX=3694 GN=POPTR_012G140900v3 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 7.7e-05
Identity = 27/61 (44.26%), Postives = 37/61 (60.66%), Query Frame = 0


Query: 12  LRLKEMEKVKNKEAETHKAVESKKASXXXXXXXXXXXVEERAKMHRCTNTVPKKCFGICN 71
           +R  + EK+KN+EA+  KA+E KKA+           + E+A  HR  NT+P KCFGIC 
Sbjct: 62  IRQHKHEKIKNEEAQIQKAMEQKKAAIDAQNQKKVLEITEKADKHRSNNTLPMKCFGICA 121

Query: 72  D 73
           D
Sbjct: 122 D 122

The following BLAST results are available for this feature:

BLAST of MELO3C006905.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140841.1	2.4e-10	75.76	PREDICTED: remorin-like [Cucumis sativus] >KGN57373.1 hypothetical protein Csa_3...	[more]
XP_011030105.1	6.2e-06	41.43	PREDICTED: uncharacterized protein LOC105129652 isoform X1 [Populus euphratica]	[more]
XP_011030107.1	8.1e-06	43.28	PREDICTED: transmembrane ascorbate ferrireductase 1-like isoform X3 [Populus eup...	[more]
XP_024438028.1	1.4e-05	43.28	transmembrane ascorbate ferrireductase 1 isoform X3 [Populus trichocarpa]	[more]
PNT11038.1	1.2e-04	44.26	hypothetical protein POPTR_012G140900v3, partial [Populus trichocarpa]	[more]

BLAST of MELO3C006905.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C006905.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C006905.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L6I9\|A0A0A0L6I9_CUCSA	1.6e-10	75.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G182090 PE=4 SV=1	[more]
tr\|A0A2K1YDD2\|A0A2K1YDD2_POPTR	7.7e-05	44.26	Uncharacterized protein (Fragment) OS=Populus trichocarpa OX=3694 GN=POPTR_012G1...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005516	Remorin_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C006905.2.1	MELO3C006905.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005516	Remorin, C-terminal	PFAM	PF03763	Remorin_C	coord: 6..65 e-value: 1.3E-6 score: 28.2
None	No IPR available	PANTHER	PTHR31775	FAMILY NOT NAMED	coord: 5..70
None	No IPR available	PANTHER	PTHR31775:SF5	REMORIN FAMILY PROTEIN-RELATED	coord: 5..70

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C006905.2	Cla006180	Watermelon (97103) v1	medwmB447
MELO3C006905.2	ClCG05G008040	Watermelon (Charleston Gray)	medwcgB416
MELO3C006905.2	Cla97C05G090080	Watermelon (97103) v2	medwmbB423

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C006905.2	Cucumber (Gy14) v2	cgybmedB201
MELO3C006905.2	Cucumber (Gy14) v2	cgybmedB353
MELO3C006905.2	Cucumber (Gy14) v1	cgymedB142
MELO3C006905.2	Cucumber (Gy14) v1	cgymedB431
MELO3C006905.2	Cucumber (Gy14) v1	cgymedB496
MELO3C006905.2	Cucurbita maxima (Rimu)	cmamedB344
MELO3C006905.2	Cucurbita maxima (Rimu)	cmamedB432
MELO3C006905.2	Cucurbita maxima (Rimu)	cmamedB661
MELO3C006905.2	Cucurbita moschata (Rifu)	cmomedB331
MELO3C006905.2	Cucurbita moschata (Rifu)	cmomedB421
MELO3C006905.2	Cucurbita moschata (Rifu)	cmomedB649
MELO3C006905.2	Cucurbita moschata (Rifu)	cmomedB944
MELO3C006905.2	Cucurbita pepo (Zucchini)	cpemedB050
MELO3C006905.2	Cucurbita pepo (Zucchini)	cpemedB233
MELO3C006905.2	Cucurbita pepo (Zucchini)	cpemedB370
MELO3C006905.2	Cucurbita pepo (Zucchini)	cpemedB831
MELO3C006905.2	Cucurbita pepo (Zucchini)	cpemedB835
MELO3C006905.2	Wild cucumber (PI 183967)	cpimedB224
MELO3C006905.2	Wild cucumber (PI 183967)	cpimedB246
MELO3C006905.2	Wild cucumber (PI 183967)	cpimedB399
MELO3C006905.2	Cucumber (Chinese Long) v2	cumedB223
MELO3C006905.2	Cucumber (Chinese Long) v2	cumedB245
MELO3C006905.2	Cucumber (Chinese Long) v2	cumedB391
MELO3C006905.2	Melon (DHL92) v3.6.1	medmedB148
MELO3C006905.2	Bottle gourd (USVL1VR-Ls)	lsimedB036
MELO3C006905.2	Bottle gourd (USVL1VR-Ls)	lsimedB397
MELO3C006905.2	Watermelon (Charleston Gray)	medwcgB408
MELO3C006905.2	Watermelon (97103) v1	medwmB467
MELO3C006905.2	Silver-seed gourd	carmedB0722
MELO3C006905.2	Silver-seed gourd	carmedB0743
MELO3C006905.2	Silver-seed gourd	carmedB0975
MELO3C006905.2	Cucumber (Chinese Long) v3	cucmedB230
MELO3C006905.2	Cucumber (Chinese Long) v3	cucmedB407
MELO3C006905.2	Watermelon (97103) v2	medwmbB412
MELO3C006905.2	Watermelon (97103) v2	medwmbB436
MELO3C006905.2	Wax gourd	medwgoB518
MELO3C006905.2	Wax gourd	medwgoB543